Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003875g0030 Nicotiana tabacum HOM05D005186 ORTHO05D006278 9.7e-196 686.8 392 100.0
Nitab4.5_0001383g0010 Nicotiana tabacum HOM05D005186 ORTHO05D006278 8.8e-181 637.1 412 90.0
CAN.G48.15 Capsicum annuum HOM05D005186 ORTHO05D006278 3.5e-153 545.4 410 80.7
Sopen03g023730 Solanum pennellii HOM05D005186 ORTHO05D006278 2.4e-146 522.7 410 77.3
Solyc03g083970.3 Solanum lycopersicum HOM05D005186 ORTHO05D006278 1.7e-144 516.5 410 76.6
PGSC0003DMG400013858 Solanum tuberosum HOM05D005186 ORTHO05D006278 1.1e-143 513.8 415 76.1
Peaxi162Scf00241g00318 Petunia axillaris HOM05D005186 ORTHO05D006278 5.8e-140 501.5 399 78.4
Oeu022491.2 Olea europaea HOM05D005186 ORTHO05D006278 9.7e-103 377.9 456 60.3
Dinv28566 Davidia involucrata HOM05D005186 ORTHO05D006278 3.1e-101 372.9 424 59.0
Cc02_g04200 Coffea canephora HOM05D005186 ORTHO05D006278 2.9e-99 366.3 418 62.9
Oeu042561.2 Olea europaea HOM05D005186 ORTHO05D006278 3.2e-98 362.8 451 56.1
SGA_v2.0_scaffold543G52822 Striga asiatica HOM05D005186 ORTHO05D006278 5.5e-98 362.1 428 59.3
Hma1.2p1_0432F.1_g151690 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 1.1e-95 354.4 419 59.4
Actinidia13575 Actinidia chinensis HOM05D005186 ORTHO05D006278 1.4e-93 347.4 453 55.4
HanXRQChr14g0461411 Helianthus annuus HOM05D005186 ORTHO05D006278 1.4e-93 347.4 415 59.5
vmacro06793 Vaccinium macrocarpon HOM05D005186 ORTHO05D006278 6.9e-93 345.1 433 54.3
Migut.F00469 Erythranthe guttata HOM05D005186 ORTHO05D006278 2.6e-92 343.2 422 56.6
Hma1.2p1_1640F.1_g295100 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 1.7e-91 340.5 412 58.3
Lj8A42G21 Lonicera japonica HOM05D005186 ORTHO05D006278 8.5e-91 338.2 418 57.4
SGA_v2.0_scaffold2G01194 Striga asiatica HOM05D005186 ORTHO05D006278 3.2e-90 336.3 423 58.9
Ciclev10005111m.g Citrus clementina HOM05D005186 ORTHO05D006278 1.6e-89 334.0 419 55.8
TWI39G1272 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 3.6e-89 332.8 423 55.1
CANSAT56G0052 Cannabis sativa HOM05D005186 ORTHO05D006278 1.0e-88 331.3 424 54.2
Aqoxy7G00728 Aquilegia oxysepala HOM05D005186 ORTHO05D006278 2.3e-88 330.1 423 54.1
MSTRG.128 Avicennia marina HOM05D005186 ORTHO05D006278 8.8e-88 328.2 432 55.6
Dinv22950 Davidia involucrata HOM05D005186 ORTHO05D006278 1.1e-87 327.8 368 61.4
TAR374G0329 Trochodendron aralioides HOM05D005186 ORTHO05D006278 3.3e-87 326.2 419 54.2
Atru.chr1.716 Acer truncatum HOM05D005186 ORTHO05D006278 3.7e-86 322.8 417 53.5
Lsat_1_v5_gn_2_129120 Lactuca sativa HOM05D005186 ORTHO05D006278 6.3e-86 322.0 416 58.7
Thecc.03G156500 Theobroma cacao HOM05D005186 ORTHO05D006278 4.1e-85 319.3 410 57.3
Potri.012G126000 Populus trichocarpa HOM05D005186 ORTHO05D006278 1.6e-84 317.4 423 56.7
TWI23G1038 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 1.6e-84 317.4 420 52.6
Duzib205G1009 Durio zibethinus HOM05D005186 ORTHO05D006278 4.5e-84 315.8 409 57.0
RhsimUnG0046700 Rhododendron simsii HOM05D005186 ORTHO05D006278 7.7e-84 315.1 435 52.9
Gohir.D03G107500 Gossypium hirsutum HOM05D005186 ORTHO05D006278 1.9e-82 310.5 406 53.9
Haze_13870 Corylus avellana HOM05D005186 ORTHO05D006278 2.5e-82 310.1 411 54.5
Nn1g01074 Nelumbo nucifera HOM05D005186 ORTHO05D006278 3.2e-82 309.7 422 51.4
Nn6g34030 Nelumbo nucifera HOM05D005186 ORTHO05D006278 3.2e-82 309.7 436 51.1
SalBow2G2587 Salvia bowleyana HOM05D005186 ORTHO05D006278 7.2e-82 308.5 402 52.7
Gorai.003G113800 Gossypium raimondii HOM05D005186 ORTHO05D006278 9.4e-82 308.1 406 53.7
QL09p019611 Quercus lobata HOM05D005186 ORTHO05D006278 2.1e-81 307.0 440 52.5
Gohir.A03G058600 Gossypium hirsutum HOM05D005186 ORTHO05D006278 1.0e-80 304.7 412 53.2
Sabra15G0140200 Salix brachista HOM05D005186 ORTHO05D006278 5.2e-80 302.4 421 52.5
CsaV3_7G006320 Cucumis sativus L. HOM05D005186 ORTHO05D006278 1.2e-79 301.2 422 48.6
ECA238G0955 Erigeron canadensis HOM05D005186 ORTHO05D006278 2.6e-79 300.1 422 54.3
Cpa.g.sc3.315 Carica papaya HOM05D005186 ORTHO05D006278 3.3e-79 299.7 426 53.8
Prupe.2G277700 Prunus persica HOM05D005186 ORTHO05D006278 7.5e-79 298.5 426 54.7
Hund11823 Selenicereus undatus HOM05D005186 ORTHO05D006278 3.7e-78 296.2 430 56.5
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 2.4e-77 293.5 438 53.4
unitig_1.g29355 Utricularia gibba HOM05D005186 ORTHO05D006278 2.4e-77 293.5 399 54.1
unitig_747.g22057 Utricularia gibba HOM05D005186 ORTHO05D006278 2.4e-77 293.5 399 54.1
Lj3g0017931 Lotus japonicus HOM05D005186 ORTHO05D006278 4.1e-77 292.7 429 52.0
Potri.015G126800 Populus trichocarpa HOM05D005186 ORTHO05D006278 9.1e-77 291.6 423 53.7
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 1.2e-76 291.2 450 49.8
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 1.2e-76 291.2 417 54.2
Eucgr.A02891 Eucalyptus grandis HOM05D005186 ORTHO05D006278 1.6e-76 290.8 436 49.5
Manes.06G135200 Manihot esculenta HOM05D005186 ORTHO05D006278 1.6e-76 290.8 422 51.4
EL10Ac3g05838 Beta vulgaris HOM05D005186 ORTHO05D006278 4.5e-76 289.3 407 54.3
COL.COLO4_14129 Corchorus olitorius HOM05D005186 ORTHO05D006278 5.9e-76 288.9 394 52.5
Manes.14G035500 Manihot esculenta HOM05D005186 ORTHO05D006278 1.0e-75 288.1 407 51.8
PGR142G0385 Punica granatum HOM05D005186 ORTHO05D006278 1.7e-75 287.3 436 50.9
Sabra12G0094900 Salix brachista HOM05D005186 ORTHO05D006278 3.8e-75 286.2 440 53.0
FAN06G2498 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.1e-74 284.6 420 50.5
CiPaw.04G060200 Carya illinoinensis HOM05D005186 ORTHO05D006278 1.5e-74 284.3 417 51.6
RcHm_v2.0_Chr1g0374461 Rosa chinensis HOM05D005186 ORTHO05D006278 1.5e-74 284.3 424 50.7
FvH4_7g27600 Fragaria vesca HOM05D005186 ORTHO05D006278 1.9e-74 283.9 420 50.5
TPR.G3671 Trifolium pratense HOM05D005186 ORTHO05D006278 2.5e-74 283.5 438 52.5
Ah.07g207900 Amaranthus hybridus HOM05D005186 ORTHO05D006278 9.4e-74 281.6 421 50.8
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.6e-73 280.8 419 50.8
PSO017G1100 Papaver somniferum HOM05D005186 ORTHO05D006278 2.1e-73 280.4 424 49.8
DCAR_020192 Daucus carota HOM05D005186 ORTHO05D006278 2.7e-73 280.0 412 51.2
FAN01G3063 Fragaria x ananassa HOM05D005186 ORTHO05D006278 3.6e-73 279.6 419 49.4
Glyma.09G231200 Glycine max HOM05D005186 ORTHO05D006278 1.0e-72 278.1 440 50.2
PSO170G0780 Papaver somniferum HOM05D005186 ORTHO05D006278 1.8e-72 277.3 428 48.4
FAN03G1399 Fragaria x ananassa HOM05D005186 ORTHO05D006278 4.0e-72 276.2 420 49.8
FAN10G1701 Fragaria x ananassa HOM05D005186 ORTHO05D006278 5.2e-72 275.8 420 49.8
Glyma.12G005300 Glycine max HOM05D005186 ORTHO05D006278 5.2e-72 275.8 436 50.9
VMungo1127G0816 Vigna mungo HOM05D005186 ORTHO05D006278 6.8e-72 275.4 451 50.1
PGR042G0730 Punica granatum HOM05D005186 ORTHO05D006278 2.0e-71 273.9 417 48.4
ClCG09G015150 Citrullus lanatus HOM05D005186 ORTHO05D006278 3.4e-71 273.1 423 45.6
Lalb_Chr19g0140361 Lupinus albus HOM05D005186 ORTHO05D006278 4.4e-71 272.7 327 60.2
Sc13g0007880 Simmondsia chinensis HOM05D005186 ORTHO05D006278 4.4e-71 272.7 415 49.4
Sed0005126 Sechium edule HOM05D005186 ORTHO05D006278 1.7e-70 270.8 403 47.9
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 8.3e-70 268.5 451 48.6
MELO3C018660.2 Cucumis melo HOM05D005186 ORTHO05D006278 1.4e-69 267.7 420 45.2
MBI04_g37589_MAGBIO Magnolia biondii HOM05D005186 ORTHO05D006278 2.4e-69 266.9 416 49.0
TAR375G0993 Trochodendron aralioides HOM05D005186 ORTHO05D006278 4.5e-68 262.7 336 53.6
Lalb_Chr01g0000291 Lupinus albus HOM05D005186 ORTHO05D006278 2.5e-66 256.9 295 59.0
CDE02G0091 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 6.1e-65 252.3 400 47.5
CSS0020740 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 1.3e-62 244.6 338 56.5
GSVIVG01018630001 Vitis vinifera HOM05D005186 ORTHO05D006278 3.7e-62 243.0 254 58.3
Sed0012571 Sechium edule HOM05D005186 ORTHO05D006278 8.3e-62 241.9 410 47.3
AUR62015515 Chenopodium quinoa HOM05D005186 ORTHO05D006278 1.4e-61 241.1 173 75.7
AUR62002195 Chenopodium quinoa HOM05D005186 ORTHO05D006278 7.0e-61 238.8 248 58.9
AL8G39220 Arabidopsis lyrata HOM05D005186 ORTHO05D006278 1.3e-59 234.6 463 42.8
Ca_25005_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 2.3e-59 233.8 167 75.4
Thhalv10004201m.g Eutrema salsugineum HOM05D005186 ORTHO05D006278 5.0e-59 232.6 462 45.2
Psat7g207000 Pisum sativum HOM05D005186 ORTHO05D006278 1.6e-57 227.6 403 44.2
Migut.F01178 Erythranthe guttata HOM05D005186 ORTHO05D006278 2.1e-57 227.3 172 72.7
AT5G62390 Arabidopsis thaliana HOM05D005186 ORTHO05D006278 1.4e-56 224.6 461 41.2
Sp2g25560 Schrenkiella parvula HOM05D005186 ORTHO05D006278 2.3e-56 223.8 475 43.8
CiPaw.03G094100 Carya illinoinensis HOM05D005186 ORTHO05D006278 6.8e-56 222.2 342 52.9
HPP92_022436 Vanilla planifolia HOM05D005186 ORTHO05D006278 1.3e-54 218.0 366 42.3
CARHR276170 Cardamine hirsuta HOM05D005186 ORTHO05D006278 1.7e-54 217.6 461 42.3
BolC3t18705H Brassica oleracea HOM05D005186 ORTHO05D006278 2.4e-53 213.8 443 44.9
C03p64500 Brassica napus HOM05D005186 ORTHO05D006278 3.2e-53 213.4 434 41.7
BcaC01g02463 Brassica carinata HOM05D005186 ORTHO05D006278 9.2e-53 211.8 434 41.5
Carub.0008s2307 Capsella rubella HOM05D005186 ORTHO05D006278 1.2e-52 211.5 476 40.5
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 7.8e-52 208.8 286 53.5
Hund04601 Selenicereus undatus HOM05D005186 ORTHO05D006278 3.0e-51 206.8 385 42.1
THA.LOC104821410 Tarenaya hassleriana HOM05D005186 ORTHO05D006278 1.1e-50 204.9 163 65.6
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 2.5e-50 203.8 154 70.8
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 4.3e-50 203.0 472 42.8
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 5.6e-50 202.6 154 70.8
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 8.0e-49 198.7 242 55.8
Aa31LG11G1230 Aethionema arabicum HOM05D005186 ORTHO05D006278 1.4e-48 198.0 454 40.7
ATR1153G063 Amborella trichopoda HOM05D005186 ORTHO05D006278 1.3e-46 191.4 440 39.5
Zm00001eb379410 Zea mays HOM05D005186 ORTHO05D006278 4.9e-46 189.5 387 38.0
BcaC01g02462 Brassica carinata HOM05D005186 ORTHO05D006278 2.4e-45 187.2 142 71.1
Thecc.01G380900 Theobroma cacao HOM05D005186 ORTHO05D006278 4.6e-44 183.0 337 42.1
COL.COLO4_12507 Corchorus olitorius HOM05D005186 ORTHO05D006278 6.6e-43 179.1 354 39.8
HanXRQChr05g0146091 Helianthus annuus HOM05D005186 ORTHO05D006278 1.1e-42 178.3 177 58.8
CDE11G1075 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 2.1e-41 174.1 400 40.2
Os06g0104400 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 1.1e-40 171.8 169 55.6
Zm00001eb229450 Zea mays HOM05D005186 ORTHO05D006278 2.3e-40 170.6 304 43.4
Os02g0105500 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 1.1e-34 151.8 301 37.2
Atru.chr5.265 Acer truncatum HOM05D005186 ORTHO05D006278 4.3e-34 149.8 130 61.5
CAN.G1067.7 Capsicum annuum HOM05D005186 ORTHO05D006278 2.4e-32 144.1 173 54.3
SHI13968 Sapria himalayana HOM05D005186 ORTHO05D006278 2.9e-30 137.1 391 33.2
CAN.G319.13 Capsicum annuum HOM05D005186 ORTHO05D006278 1.2e-25 121.7 79 82.3
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 9.3e-21 105.5 120 45.8
GSVIVG01000691001 Vitis vinifera HOM05D005186 ORTHO05D006278 1.2e-20 105.1 86 68.6
COL.COLO4_07114 Corchorus olitorius HOM05D005186 ORTHO05D006278 3.5e-20 103.6 81 69.1
GSVIVG01000692001 Vitis vinifera HOM05D005186 ORTHO05D006278 3.5e-20 103.6 86 68.6
CSS0003747 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 1.1e-18 98.6 67 73.1
ECA238G1972 Erigeron canadensis HOM05D005186 ORTHO05D006278 5.3e-16 89.7 64 73.4
Nn3g18746 Nelumbo nucifera HOM05D005186 ORTHO05D006278 6.0e-12 76.3 67 55.2
vmacro13212 Vaccinium macrocarpon HOM05D006269 ORTHO05D001487 1.1e-10 72.0 185 28.1
Ca_25004_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 5.6e-10 69.7 222 36.0
Mapoly0035s0113 Marchantia polymorpha HOM05D006269 ORTHO05D001487 7.4e-10 69.3 158 30.4
Sabra14G0043300 Salix brachista HOM05D005186 ORTHO05D006278 1.6e-09 68.2 67 50.7
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 2.1e-09 67.8 99 44.4
FAN03G1572 Fragaria x ananassa HOM05D005186 ORTHO05D006278 2.8e-09 67.4 48 68.8
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 3.1e-08 63.9 99 40.4
SEGI_35486 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 3.1e-08 63.9 107 34.6
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 5.3e-08 63.2 99 39.4
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 5.3e-08 63.2 99 39.4
Atru.chr1.1456 Acer truncatum HOM05D005186 ORTHO05D006278 9.0e-08 62.4 67 49.3
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 9.0e-08 62.4 99 39.4
Mapoly0045s0108 Marchantia polymorpha HOM05D006269 ORTHO05D001487 9.0e-08 62.4 101 33.7
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 9.0e-08 62.4 99 38.4
Rhsim10G0141000 Rhododendron simsii HOM05D006269 ORTHO05D001487 1.2e-07 62.0 186 26.3
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 1.2e-07 62.0 99 42.4
SEGI_27071 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 1.2e-07 62.0 107 34.6
SEGI_37331 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 1.5e-07 61.6 126 28.6
RcHm_v2.0_Chr1g0335331 Rosa chinensis HOM05D005186 ORTHO05D006278 2.0e-07 61.2 60 61.7
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 2.6e-07 60.8 113 38.1
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 3.4e-07 60.5 99 40.4
arahy.Tifrunner.gnm1.ann1.II6FYR Arachis hypogaea HOM05D006269 ORTHO05D001487 3.4e-07 60.5 117 31.6
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 5.8e-07 59.7 99 38.4
Lsat_1_v5_gn_6_68201 Lactuca sativa HOM05D005186 ORTHO05D006278 7.6e-07 59.3 34 85.3
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 9.9e-07 58.9 99 37.4
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 9.9e-07 58.9 132 31.1
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 1.3e-06 58.5 99 37.4
SEGI_30715 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 1.3e-06 58.5 99 35.4
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 1.7e-06 58.2 99 36.4
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 1.7e-06 58.2 99 37.4
Pp3c13_3400 Physcomitrium patens HOM05D006269 ORTHO05D001487 1.7e-06 58.2 113 31.0
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 1.7e-06 58.2 99 36.4
arahy.Tifrunner.gnm1.ann1.YSVF0U Arachis hypogaea HOM05D006269 ORTHO05D001487 2.2e-06 57.8 153 27.5
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 2.2e-06 57.8 133 30.1
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 2.2e-06 57.8 99 38.4
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 2.9e-06 57.4 99 38.4
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 2.9e-06 57.4 100 37.0
SEGI_19331 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 3.8e-06 57.0 108 31.5
vmacro18155 Vaccinium macrocarpon HOM05D005710 ORTHO05D004657 3.8e-06 57.0 99 36.4
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 4.9e-06 56.6 99 38.4
Ciclev10011685m.g Citrus clementina HOM05D005710 ORTHO05D004657 6.4e-06 56.2 99 35.4
Lalb_Chr10g0096511 Lupinus albus HOM05D006269 ORTHO05D001487 6.4e-06 56.2 106 29.2
SEGI_14808 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 6.4e-06 56.2 127 29.9
TWI60G1009 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 6.4e-06 56.2 99 38.4
Atru.chr8.406 Acer truncatum HOM05D005710 ORTHO05D004657 8.4e-06 55.8 99 36.4
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 8.4e-06 55.8 100 38.0
Lalb_Chr17g0337061 Lupinus albus HOM05D005710 ORTHO05D004657 8.4e-06 55.8 99 37.4
Zm00001eb352990 Zea mays HOM05D005710 ORTHO05D004657 8.4e-06 55.8 99 36.4


User provided reference genes

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