Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003865g0100 Nicotiana tabacum HOM05D000026 ORTHO05D008596 2.9e-105 385.2 186 100.0
Nitab4.5_0000258g0260 Nicotiana tabacum HOM05D000026 ORTHO05D008596 2.1e-92 342.4 199 84.9
CAN.G360.5 Capsicum annuum HOM05D000026 ORTHO05D008596 2.4e-83 312.4 186 81.7
Sopen05g028950 Solanum pennellii HOM05D000026 ORTHO05D008596 4.2e-80 301.6 183 79.8
Solyc05g050530.3 Solanum lycopersicum HOM05D000026 ORTHO05D008596 5.5e-80 301.2 184 79.3
Cc02_g39620 Coffea canephora HOM05D000026 ORTHO05D008596 4.2e-72 275.0 200 67.0
Peaxi162Scf00716g00425 Petunia axillaris HOM05D000026 ORTHO05D008596 1.6e-71 273.1 186 72.6
RcHm_v2.0_Chr1g0360221 Rosa chinensis HOM05D000026 ORTHO05D008596 1.6e-71 273.1 197 67.0
FAN10G3002 Fragaria x ananassa HOM05D000026 ORTHO05D008596 2.7e-71 272.3 197 65.5
PGSC0003DMG400007008 Solanum tuberosum HOM05D000026 ORTHO05D008596 1.0e-70 270.4 162 80.2
FvH4_7g16970 Fragaria vesca HOM05D000026 ORTHO05D008596 1.8e-70 269.6 197 65.5
FAN06G4713 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.8e-70 269.6 197 65.5
FAN06G2200 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.1e-69 266.9 197 64.5
Cfa003780 Carpinus fangiana HOM05D000026 ORTHO05D008596 2.5e-69 265.8 196 63.3
CSS0047897 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D008596 4.3e-69 265.0 197 63.5
Atru.chr5.703 Acer truncatum HOM05D000026 ORTHO05D008596 9.7e-69 263.8 196 64.3
vmacro12664 Vaccinium macrocarpon HOM05D000026 ORTHO05D008596 1.6e-68 263.1 196 65.3
CANSAT56G3067 Cannabis sativa HOM05D000026 ORTHO05D008596 1.1e-67 260.4 194 62.9
QL08p045855 Quercus lobata HOM05D000026 ORTHO05D008596 1.8e-67 259.6 198 60.6
Hma1.2p1_0101F.1_g049143 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 2.4e-67 259.2 191 66.0
Hma1.2p1_2584F.1_g324880 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 2.4e-67 259.2 191 66.0
Lj7A496T103 Lonicera japonica HOM05D000026 ORTHO05D008596 2.4e-67 259.2 196 65.3
MSTRG.28272 Avicennia marina HOM05D000026 ORTHO05D008596 5.3e-67 258.1 200 62.0
FAN01G2684 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.5e-66 256.5 215 60.0
Manes.05G020900 Manihot esculenta HOM05D000026 ORTHO05D008596 2.0e-66 256.1 195 62.6
Hund27184 Selenicereus undatus HOM05D000026 ORTHO05D008596 4.5e-66 255.0 204 60.8
Thecc.01G339500 Theobroma cacao HOM05D000026 ORTHO05D008596 7.7e-66 254.2 197 60.9
Gohir.A07G136500 Gossypium hirsutum HOM05D000026 ORTHO05D008596 1.0e-65 253.8 196 62.2
Lsat_1_v5_gn_4_30860 Lactuca sativa HOM05D000026 ORTHO05D008596 1.3e-65 253.4 198 61.6
PGR031G0964 Punica granatum HOM05D000026 ORTHO05D008596 2.9e-65 252.3 199 61.3
EL10Ac1g00239 Beta vulgaris HOM05D000026 ORTHO05D008596 3.8e-65 251.9 197 59.4
Ciclev10022329m.g Citrus clementina HOM05D000026 ORTHO05D008596 3.8e-65 251.9 198 61.1
Gohir.D07G141900 Gossypium hirsutum HOM05D000026 ORTHO05D008596 6.5e-65 251.1 196 61.7
Gorai.001G153500 Gossypium raimondii HOM05D000026 ORTHO05D008596 6.5e-65 251.1 196 61.7
Cpa.g.sc96.56 Carica papaya HOM05D000026 ORTHO05D008596 8.5e-65 250.8 196 60.2
GSVIVG01027181001 Vitis vinifera HOM05D000026 ORTHO05D008596 8.5e-65 250.8 192 62.0
DCAR_006978 Daucus carota HOM05D000026 ORTHO05D008596 1.1e-64 250.4 200 61.5
MBI04_g28825_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D008596 7.2e-64 247.7 200 58.0
Aqoxy5G04296 Aquilegia oxysepala HOM05D000026 ORTHO05D008596 9.4e-64 247.3 197 61.9
Prupe.2G192000 Prunus persica HOM05D000026 ORTHO05D008596 1.2e-63 246.9 197 59.4
SGA_v2.0_scaffold232G43545 Striga asiatica HOM05D000026 ORTHO05D008596 2.1e-63 246.1 200 60.5
TAR629G1880 Trochodendron aralioides HOM05D000026 ORTHO05D008596 2.1e-63 246.1 198 58.1
HanXRQChr16g0524761 Helianthus annuus HOM05D000026 ORTHO05D008596 4.6e-63 245.0 198 61.1
TWI23G0686 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 4.6e-63 245.0 199 62.3
Potri.014G100700 Populus trichocarpa HOM05D000026 ORTHO05D008596 6.1e-63 244.6 192 60.9
arahy.Tifrunner.gnm1.ann1.HRQ3AE Arachis hypogaea HOM05D000026 ORTHO05D008596 1.4e-62 243.4 196 61.7
MD01G1084300 Malus domestica HOM05D000026 ORTHO05D008596 1.4e-62 243.4 197 59.9
Potri.002G173800 Populus trichocarpa HOM05D000026 ORTHO05D008596 8.8e-62 240.7 200 57.5
AL4G46010 Arabidopsis lyrata HOM05D000026 ORTHO05D008596 1.1e-61 240.4 194 60.3
arahy.Tifrunner.gnm1.ann1.CN1679 Arachis hypogaea HOM05D000026 ORTHO05D008596 1.5e-61 240.0 196 61.2
TWI59G0194 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 1.5e-61 240.0 199 60.3
Carub.0004s2930 Capsella rubella HOM05D000026 ORTHO05D008596 2.5e-61 239.2 197 58.4
ECA234G0680 Erigeron canadensis HOM05D000026 ORTHO05D008596 2.5e-61 239.2 199 60.3
Zm00001eb001050 Zea mays HOM05D000026 ORTHO05D008596 9.7e-61 237.3 199 58.3
Eucgr.D02387 Eucalyptus grandis HOM05D000026 ORTHO05D008596 1.3e-60 236.9 199 60.8
CARHR141930 Cardamine hirsuta HOM05D000026 ORTHO05D008596 2.8e-60 235.7 197 58.4
AT2G46580 Arabidopsis thaliana HOM05D000026 ORTHO05D008596 3.7e-60 235.3 194 59.3
Rhsim01G0174600 Rhododendron simsii HOM05D000026 ORTHO05D008596 4.8e-60 235.0 182 62.6
PSO063G7217 Papaver somniferum HOM05D000026 ORTHO05D008596 6.3e-60 234.6 194 59.3
FAN10G2309 Fragaria x ananassa HOM05D000026 ORTHO05D000127 1.4e-59 233.4 169 65.7
Lalb_Chr10g0100681 Lupinus albus HOM05D000026 ORTHO05D008596 1.4e-59 233.4 195 57.9
Phvul.010G115400 Phaseolus vulgaris HOM05D000026 ORTHO05D008596 2.4e-59 232.6 192 59.9
Os03g0115500 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D008596 3.1e-59 232.3 199 56.8
Thhalv10001639m.g Eutrema salsugineum HOM05D000026 ORTHO05D008596 5.3e-59 231.5 197 56.9
A04p34480 Brassica napus HOM05D000026 ORTHO05D008596 6.9e-59 231.1 197 56.3
BraA04t18906Z Brassica rapa HOM05D000026 ORTHO05D008596 6.9e-59 231.1 197 56.3
C04p72250 Brassica napus HOM05D000026 ORTHO05D008596 1.2e-58 230.3 197 56.9
unitig_21.g20560 Utricularia gibba HOM05D000026 ORTHO05D008596 1.2e-58 230.3 200 59.0
VMungo0331G1134 Vigna mungo HOM05D000026 ORTHO05D008596 1.2e-58 230.3 192 59.9
BcaNung06661 Brassica carinata HOM05D000026 ORTHO05D008596 2.0e-58 229.6 200 58.0
Migut.N01531 Erythranthe guttata HOM05D000026 ORTHO05D008596 3.4e-58 228.8 200 58.0
MELO3C006011.2 Cucumis melo HOM05D000026 ORTHO05D008596 4.5e-58 228.4 197 57.4
BcaC02g07019 Brassica carinata HOM05D000026 ORTHO05D008596 5.9e-58 228.0 197 56.3
TPR.G20231 Trifolium pratense HOM05D000026 ORTHO05D008596 5.9e-58 228.0 198 58.6
BcaC02g07042 Brassica carinata HOM05D000026 ORTHO05D008596 7.7e-58 227.6 196 57.1
Lj3g0003520 Lotus japonicus HOM05D000026 ORTHO05D008596 1.0e-57 227.3 195 57.9
Ca_23515_v3 Cicer arietinum L. HOM05D000026 ORTHO05D008596 5.0e-57 224.9 190 59.5
CsaV3_3G007930 Cucumis sativus L. HOM05D000026 ORTHO05D008596 5.0e-57 224.9 195 55.9
Glyma.16G023100 Glycine max HOM05D000026 ORTHO05D008596 6.5e-57 224.6 192 59.4
CDE02G1978 Ceratophyllum demersum HOM05D000026 ORTHO05D008596 8.5e-57 224.2 199 56.8
Medtr8g027365 Medicago truncatula HOM05D000026 ORTHO05D008596 1.1e-56 223.8 192 57.8
THA.LOC104827623 Tarenaya hassleriana HOM05D000026 ORTHO05D008596 1.4e-56 223.4 194 55.2
Sp4g28630 Schrenkiella parvula HOM05D000026 ORTHO05D008596 3.2e-56 222.2 193 54.9
COL.COLO4_06235 Corchorus olitorius HOM05D000026 ORTHO05D008596 9.4e-56 220.7 164 65.9
Sed0016971 Sechium edule HOM05D000026 ORTHO05D008596 1.6e-55 219.9 197 53.3
Duzib133G0719 Durio zibethinus HOM05D000026 ORTHO05D008596 1.4e-54 216.9 164 64.0
SEGI_21315 Sequoiadendron giganteum HOM05D000026 ORTHO05D008596 3.0e-54 215.7 196 55.6
Dinv32607 Davidia involucrata HOM05D000026 ORTHO05D008596 1.1e-53 213.8 134 70.1
AUR62004514 Chenopodium quinoa HOM05D000026 ORTHO05D008596 3.3e-53 212.2 169 58.6
FAN03G0355 Fragaria x ananassa HOM05D000026 ORTHO05D008596 4.8e-52 208.4 155 63.9
Hma1.2p1_0101F.1_g049146 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 4.8e-52 208.4 134 69.4
Hma1.2p1_2584F.1_g324890 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 4.8e-52 208.4 134 69.4
CiPaw.01G078200 Carya illinoinensis HOM05D000026 ORTHO05D008596 8.2e-52 207.6 166 56.6
Oeu004961.1 Olea europaea HOM05D000026 ORTHO05D008596 3.5e-50 202.2 133 66.2
Aa31LG1G27980 Aethionema arabicum HOM05D000026 ORTHO05D008596 1.9e-48 196.4 165 58.8
BolC4t28712H Brassica oleracea HOM05D000026 ORTHO05D008596 4.2e-48 195.3 219 45.7
PSO170G4931 Papaver somniferum HOM05D000026 ORTHO05D008596 2.7e-47 192.6 183 54.1
Mapoly0085s0082 Marchantia polymorpha HOM05D000026 ORTHO05D008596 1.1e-45 187.2 199 49.2
Actinidia28110 Actinidia chinensis HOM05D000026 ORTHO05D008596 2.8e-44 182.6 164 54.9
Sabra14G0074100 Salix brachista HOM05D000026 ORTHO05D008596 1.7e-41 173.3 174 49.4
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 6.5e-41 171.4 194 43.3
Pp3c7_90 Physcomitrium patens HOM05D000026 ORTHO05D008596 3.2e-40 169.1 197 41.6
Nn1g00327 Nelumbo nucifera HOM05D000026 ORTHO05D008596 1.0e-38 164.1 183 49.2
SMO119G0236 Selaginella moellendorffii HOM05D000026 ORTHO05D008596 8.8e-38 161.0 192 44.3
ClCG05G000710 Citrullus lanatus HOM05D000026 ORTHO05D008596 9.1e-35 151.0 269 36.1
Hma1.2p1_0101F.1_g049160 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.2e-31 140.6 92 69.6
Sc01g0002470 Simmondsia chinensis HOM05D000026 ORTHO05D008596 2.6e-29 132.9 109 56.0
CBR_g3312 Chara braunii HOM05D000026 ORTHO05D008596 6.3e-28 128.3 224 37.1
AUR62022739 Chenopodium quinoa HOM05D000026 ORTHO05D008596 1.4e-27 127.1 92 63.0
HPP92_015098 Vanilla planifolia HOM05D000026 ORTHO05D008596 4.5e-26 122.1 111 53.2
Actinidia28403 Actinidia chinensis HOM05D000026 ORTHO05D008596 2.0e-18 96.7 81 55.6
Sabra02G0139600 Salix brachista HOM05D000026 ORTHO05D008596 5.9e-18 95.1 70 62.9
MCO05G651 Micromonas commoda HOM05D000026 ORTHO05D008596 1.7e-17 93.6 179 33.5
Zm00001eb244850 Zea mays HOM05D017471 ORTHO05D012887 1.2e-13 80.9 58 69.0
Cre02.g095100 Chlamydomonas reinhardtii HOM05D000026 ORTHO05D008596 2.6e-13 79.7 136 33.1
Hund19453 Selenicereus undatus HOM05D004066 ORTHO05D008596 2.2e-12 76.6 53 67.9
ATR0757G161 Amborella trichopoda HOM05D000026 ORTHO05D008596 1.4e-11 73.9 75 49.3
Zm00001eb123990 Zea mays HOM05D000026 ORTHO05D012887 1.4e-11 73.9 57 64.9
Haze_15680 Corylus avellana HOM05D000026 ORTHO05D008596 1.2e-10 70.9 44 72.7
PRCOL_00000497 Prasinoderma coloniale HOM05D000026 ORTHO05D008596 2.0e-10 70.1 227 28.2
TAR636G3419 Trochodendron aralioides HOM05D000026 ORTHO05D008596 1.8e-06 57.0 33 66.7


User provided reference genes

Program Settings