Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 2.9e-70 268.5 136 100.0
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 5.5e-37 157.9 140 68.6
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 9.3e-37 157.1 124 71.0
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 1.7e-30 136.3 130 67.7
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 8.4e-30 134.0 127 66.1
Peaxi162Scf00025g00208 Petunia axillaris HOM05D006882 ORTHO05D008688 3.8e-22 108.6 80 73.8
Nitab4.5_0007320g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 1.1e-21 107.1 52 98.1
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 1.4e-21 106.7 75 74.7
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 1.2e-20 103.6 80 72.5
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 2.4e-16 89.4 107 52.3
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 9.1e-16 87.4 64 71.9
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 9.1e-16 87.4 124 50.0
Peaxi162Scf00202g00010 Petunia axillaris HOM05D006882 ORTHO05D008688 3.4e-15 85.5 77 63.6
Peaxi162Scf00271g00524 Petunia axillaris HOM05D006882 ORTHO05D008688 1.7e-14 83.2 122 46.7
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 2.2e-14 82.8 98 55.1
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 2.9e-14 82.4 77 57.1
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 5.0e-14 81.6 60 70.0
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 8.5e-14 80.9 125 48.8
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 1.1e-13 80.5 107 49.5
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 5.5e-13 78.2 98 52.0
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 7.2e-13 77.8 98 52.0
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 9.4e-13 77.4 124 45.2
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 1.2e-12 77.0 110 47.3
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 1.2e-12 77.0 113 50.4
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.6e-12 76.6 98 52.0
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 1.6e-12 76.6 125 45.6
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 2.7e-12 75.9 107 56.1
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 3.6e-12 75.5 113 47.8
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 3.6e-12 75.5 111 45.9
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 3.6e-12 75.5 108 46.3
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 6.1e-12 74.7 114 43.0
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 7.9e-12 74.3 89 55.1
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 7.9e-12 74.3 79 55.7
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 7.9e-12 74.3 100 48.0
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 1.0e-11 73.9 96 49.0
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 1.0e-11 73.9 76 55.3
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.4e-11 73.6 98 51.0
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 1.4e-11 73.6 94 55.3
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 1.4e-11 73.6 94 55.3
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 1.4e-11 73.6 115 45.2
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 1.4e-11 73.6 93 50.5
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 1.8e-11 73.2 93 52.7
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 1.8e-11 73.2 116 44.0
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 2.3e-11 72.8 84 56.0
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 2.3e-11 72.8 74 58.1
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 3.0e-11 72.4 119 44.5
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 3.9e-11 72.0 124 45.2
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 3.9e-11 72.0 66 57.6
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 3.9e-11 72.0 74 58.1
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 3.9e-11 72.0 74 58.1
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 6.7e-11 71.2 77 55.8
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 6.7e-11 71.2 107 48.6
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 6.7e-11 71.2 58 65.5
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 1.1e-10 70.5 66 57.6
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 1.1e-10 70.5 94 53.2
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 1.5e-10 70.1 104 46.2
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 1.5e-10 70.1 116 40.5
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 2.0e-10 69.7 71 59.2
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 2.6e-10 69.3 92 47.8
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 3.3e-10 68.9 122 40.2
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 3.3e-10 68.9 106 43.4
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 4.4e-10 68.6 108 42.6
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 4.4e-10 68.6 106 40.6
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 4.4e-10 68.6 52 67.3
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 5.7e-10 68.2 87 49.4
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 5.7e-10 68.2 87 49.4
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 5.7e-10 68.2 71 53.5
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 5.7e-10 68.2 129 42.6
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 7.4e-10 67.8 71 60.6
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 7.4e-10 67.8 124 41.9
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 9.7e-10 67.4 72 61.1
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 1.3e-09 67.0 108 40.7
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 1.3e-09 67.0 89 50.6
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 1.7e-09 66.6 117 42.7
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 2.2e-09 66.2 74 58.1
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 2.2e-09 66.2 97 47.4
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 2.2e-09 66.2 88 48.9
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 2.2e-09 66.2 118 44.1
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 2.8e-09 65.9 90 47.8
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 2.8e-09 65.9 119 37.8
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 2.8e-09 65.9 61 59.0
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 3.7e-09 65.5 119 40.3
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 4.8e-09 65.1 121 43.0
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 4.8e-09 65.1 89 47.2
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 6.3e-09 64.7 112 40.2
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 6.3e-09 64.7 72 58.3
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 8.2e-09 64.3 73 49.3
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 1.1e-08 63.9 81 50.6
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 1.1e-08 63.9 81 50.6
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 1.1e-08 63.9 81 50.6
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 1.1e-08 63.9 74 48.6
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 2.4e-08 62.8 73 54.8
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 2.4e-08 62.8 72 56.9
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 2.4e-08 62.8 127 35.4
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 3.1e-08 62.4 75 54.7
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 3.1e-08 62.4 107 38.3
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 4.1e-08 62.0 107 42.1
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 1.5e-07 60.1 105 43.8
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 1.5e-07 60.1 129 35.7
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 2.0e-07 59.7 124 40.3
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 2.6e-07 59.3 86 44.2
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 5.9e-07 58.2 61 59.0
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.0e-06 57.4 73 49.3
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 1.7e-06 56.6 46 60.9
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.7e-06 56.6 73 49.3
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 3.8e-06 55.5 51 60.8


User provided reference genes

Program Settings