Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003829g0030 Nicotiana tabacum HOM05D000018 ORTHO05D005005 5.0e-63 244.2 117 100.0
Nitab4.5_0000070g0220 Nicotiana tabacum HOM05D000018 ORTHO05D005005 5.7e-51 204.1 170 64.7
Solyc02g093080.3 Solanum lycopersicum HOM05D000018 ORTHO05D005005 6.1e-29 131.0 72 81.9
Sopen02g037650 Solanum pennellii HOM05D000018 ORTHO05D005005 6.1e-29 131.0 72 81.9
PGSC0003DMG401024988 Solanum tuberosum HOM05D000018 ORTHO05D005005 8.0e-29 130.6 72 81.9
Nitab4.5_0001603g0090 Nicotiana tabacum HOM05D000018 ORTHO05D005005 1.0e-28 130.2 271 33.9
Nitab4.5_0000929g0050 Nicotiana tabacum HOM05D000018 ORTHO05D005005 1.4e-28 129.8 72 81.9
Peaxi162Scf00549g00224 Petunia axillaris HOM05D000018 ORTHO05D005005 1.8e-28 129.4 262 34.7
MSTRG.23724 Avicennia marina HOM05D000018 ORTHO05D005005 2.3e-28 129.0 72 81.9
Solyc02g093070.3 Solanum lycopersicum HOM05D000018 ORTHO05D005005 5.2e-28 127.9 72 80.6
Sopen02g037640 Solanum pennellii HOM05D000018 ORTHO05D005005 1.5e-27 126.3 71 80.3
CAN.G370.30 Capsicum annuum HOM05D000018 ORTHO05D005005 2.0e-27 125.9 72 76.4
SalBow1G4046 Salvia bowleyana HOM05D000018 ORTHO05D005005 3.4e-27 125.2 71 80.3
PGSC0003DMG402024988 Solanum tuberosum HOM05D000018 ORTHO05D005005 3.4e-27 125.2 72 79.2
Migut.H00408 Erythranthe guttata HOM05D000018 ORTHO05D005005 2.2e-26 122.5 72 77.8
Rhsim08G0098500 Rhododendron simsii HOM05D000018 ORTHO05D005005 2.2e-26 122.5 73 76.7
Oeu014804.1 Olea europaea HOM05D000018 ORTHO05D005005 2.9e-26 122.1 71 78.9
SGA_v2.0_scaffold15G07351 Striga asiatica HOM05D000018 ORTHO05D005005 3.7e-26 121.7 71 76.1
Actinidia03802 Actinidia chinensis HOM05D000018 ORTHO05D005005 1.1e-25 120.2 73 75.3
EL10Ac6g15706 Beta vulgaris HOM05D000018 ORTHO05D005005 1.4e-25 119.8 186 36.0
GSVIVG01022069001 Vitis vinifera HOM05D000018 ORTHO05D005005 1.4e-25 119.8 72 76.4
Dinv30021 Davidia involucrata HOM05D000018 ORTHO05D005005 1.9e-25 119.4 65 80.0
PGR004G0264 Punica granatum HOM05D000018 ORTHO05D005005 3.2e-25 118.6 69 76.8
Atru.chr3.270 Acer truncatum HOM05D000018 ORTHO05D005005 5.4e-25 117.9 68 79.4
Hma1.2p1_0017F.1_g011770 Hydrangea macrophylla HOM05D000018 ORTHO05D005005 5.4e-25 117.9 72 73.6
vmacro17965 Vaccinium macrocarpon HOM05D000018 ORTHO05D005005 5.4e-25 117.9 73 72.6
unitig_736.g22392 Utricularia gibba HOM05D000018 ORTHO05D005005 7.0e-25 117.5 72 72.2
Gohir.A10G091100 Gossypium hirsutum HOM05D000018 ORTHO05D005005 2.0e-24 115.9 71 74.6
Gohir.D10G097000 Gossypium hirsutum HOM05D000018 ORTHO05D005005 2.7e-24 115.5 71 74.6
Thecc.01G061600 Theobroma cacao HOM05D000018 ORTHO05D005005 2.7e-24 115.5 72 73.6
FvH4_1g16460 Fragaria vesca HOM05D000018 ORTHO05D005005 3.5e-24 115.2 71 74.6
Gorai.011G106500 Gossypium raimondii HOM05D000018 ORTHO05D005005 3.5e-24 115.2 71 74.6
RcHm_v2.0_Chr2g0106341 Rosa chinensis HOM05D000018 ORTHO05D005005 3.5e-24 115.2 71 74.6
Ciclev10026055m.g Citrus clementina HOM05D000018 ORTHO05D005005 4.6e-24 114.8 72 73.6
Sabra07G0042000 Salix brachista HOM05D000018 ORTHO05D005005 4.6e-24 114.8 68 75.0
FAN26G0536 Fragaria x ananassa HOM05D000018 ORTHO05D005005 7.8e-24 114.0 71 73.2
Thecc.01G061500 Theobroma cacao HOM05D000018 ORTHO05D005005 1.7e-23 112.8 69 73.9
Potri.007G047100 Populus trichocarpa HOM05D000018 ORTHO05D005005 2.3e-23 112.5 68 72.1
Cc07_g06270 Coffea canephora HOM05D000018 ORTHO05D005005 3.0e-23 112.1 71 70.4
Cc07_g06310 Coffea canephora HOM05D000018 ORTHO05D005005 5.0e-23 111.3 66 72.7
ECA246G3867 Erigeron canadensis HOM05D000018 ORTHO05D005005 5.0e-23 111.3 70 71.4
MD02G1177200 Malus domestica HOM05D000018 ORTHO05D005005 5.0e-23 111.3 70 72.9
Manes.13G119900 Manihot esculenta HOM05D000018 ORTHO05D005005 5.0e-23 111.3 68 73.5
Eucgr.I00887 Eucalyptus grandis HOM05D000018 ORTHO05D005005 8.6e-23 110.5 68 72.1
Prupe.6G230800 Prunus persica HOM05D000018 ORTHO05D005005 8.6e-23 110.5 71 71.8
TWI09G0523 Tripterygium wilfordii HOM05D000018 ORTHO05D005005 8.6e-23 110.5 73 69.9
Cpa.g.sc55.109 Carica papaya HOM05D000018 ORTHO05D005005 1.5e-22 109.8 69 71.0
Gorai.003G026400 Gossypium raimondii HOM05D000018 ORTHO05D005005 1.5e-22 109.8 68 72.1
Nn5g30378 Nelumbo nucifera HOM05D000018 ORTHO05D005005 1.5e-22 109.8 69 71.0
Gohir.A02G155800 Gossypium hirsutum HOM05D000018 ORTHO05D005005 2.5e-22 109.0 68 72.1
PSO210G4274 Papaver somniferum HOM05D000018 ORTHO05D005005 2.5e-22 109.0 68 72.1
Lsat_1_v5_gn_3_90240 Lactuca sativa HOM05D000018 ORTHO05D005005 4.3e-22 108.2 71 70.4
PSO170G4200 Papaver somniferum HOM05D000018 ORTHO05D005005 4.3e-22 108.2 68 70.6
ClCG02G008010 Citrullus lanatus HOM05D000018 ORTHO05D005005 5.6e-22 107.8 71 70.4
MELO3C024783.2 Cucumis melo HOM05D000018 ORTHO05D005005 5.6e-22 107.8 71 70.4
CsaV3_2G035650 Cucumis sativus L. HOM05D000018 ORTHO05D005005 5.6e-22 107.8 71 70.4
HanXRQChr15g0473621 Helianthus annuus HOM05D000018 ORTHO05D005005 5.6e-22 107.8 70 70.0
QL06p040443 Quercus lobata HOM05D000018 ORTHO05D005005 5.6e-22 107.8 70 70.0
CiPaw.01G014500 Carya illinoinensis HOM05D000018 ORTHO05D005005 7.3e-22 107.5 70 68.6
TAR381G1021 Trochodendron aralioides HOM05D000018 ORTHO05D005005 7.3e-22 107.5 67 73.1
Haze_15365 Corylus avellana HOM05D000018 ORTHO05D005005 1.2e-21 106.7 70 67.1
CDE02G2246 Ceratophyllum demersum HOM05D000018 ORTHO05D005005 1.6e-21 106.3 71 64.8
COL.COLO4_11462 Corchorus olitorius HOM05D000018 ORTHO05D005005 1.6e-21 106.3 218 31.2
Sed0024839 Sechium edule HOM05D000018 ORTHO05D005005 1.6e-21 106.3 71 69.0
Aqoxy5G01174 Aquilegia oxysepala HOM05D000018 ORTHO05D005005 2.1e-21 105.9 68 72.1
AUR62003920 Chenopodium quinoa HOM05D000018 ORTHO05D005005 3.6e-21 105.1 64 71.9
Eucgr.I00885 Eucalyptus grandis HOM05D000018 ORTHO05D005005 3.6e-21 105.1 69 66.7
Lalb_Chr05g0226231 Lupinus albus HOM05D000018 ORTHO05D005005 4.7e-21 104.8 74 68.9
Sp5g11950 Schrenkiella parvula HOM05D000018 ORTHO05D005005 4.7e-21 104.8 76 65.8
AT3G50210 Arabidopsis thaliana HOM05D000018 ORTHO05D005005 6.2e-21 104.4 76 65.8
AL5G30340 Arabidopsis lyrata HOM05D000018 ORTHO05D005005 1.8e-20 102.8 76 65.8
CANSAT25G0456 Cannabis sativa HOM05D000018 ORTHO05D005005 1.8e-20 102.8 72 72.2
CANSAT25G2708 Cannabis sativa HOM05D000018 ORTHO05D005005 1.8e-20 102.8 72 72.2
Ca_22132_v3 Cicer arietinum L. HOM05D000018 ORTHO05D005005 3.1e-20 102.1 74 66.2
COL.COLO4_11463 Corchorus olitorius HOM05D000018 ORTHO05D005005 3.1e-20 102.1 129 45.0
QL06p040449 Quercus lobata HOM05D000018 ORTHO05D005005 3.1e-20 102.1 73 63.0
THA.LOC104821246 Tarenaya hassleriana HOM05D000018 ORTHO05D005005 3.1e-20 102.1 72 66.7
Carub.0005s1653 Capsella rubella HOM05D000018 ORTHO05D005005 5.2e-20 101.3 76 64.5
VMungo0251G1013 Vigna mungo HOM05D000018 ORTHO05D005005 5.2e-20 101.3 74 66.2
arahy.Tifrunner.gnm1.ann1.2NJ3DY Arachis hypogaea HOM05D000018 ORTHO05D005005 6.8e-20 100.9 71 67.6
Thhalv10010533m.g Eutrema salsugineum HOM05D000018 ORTHO05D005005 6.8e-20 100.9 76 64.5
Phvul.003G241200 Phaseolus vulgaris HOM05D000018 ORTHO05D005005 6.8e-20 100.9 74 64.9
arahy.Tifrunner.gnm1.ann1.S9I11U Arachis hypogaea HOM05D000018 ORTHO05D005005 8.9e-20 100.5 71 67.6
CARHR159540 Cardamine hirsuta HOM05D000018 ORTHO05D005005 8.9e-20 100.5 76 64.5
MBI16_g26807_MAGBIO Magnolia biondii HOM05D000018 ORTHO05D005005 8.9e-20 100.5 69 65.2
Lj4g0011269 Lotus japonicus HOM05D000018 ORTHO05D005005 1.5e-19 99.8 74 66.2
Os09g0245500 Oryza sativa ssp. japonica HOM05D000018 ORTHO05D005005 1.5e-19 99.8 69 60.9
ATR0724G007 Amborella trichopoda HOM05D000018 ORTHO05D005005 3.4e-19 98.6 67 64.2
Thecc.01G061400 Theobroma cacao HOM05D000018 ORTHO05D005005 3.4e-19 98.6 69 66.7
Zm00001eb226150 Zea mays HOM05D000018 ORTHO05D005005 3.4e-19 98.6 240 27.9
BcaB01g00633 Brassica carinata HOM05D000018 ORTHO05D005005 4.4e-19 98.2 76 64.5
CAN.G225.15 Capsicum annuum HOM05D000070 ORTHO05D005005 4.4e-19 98.2 68 66.2
Psat4g085080 Pisum sativum HOM05D000018 ORTHO05D005005 4.4e-19 98.2 74 64.9
CANSAT25G3128 Cannabis sativa HOM05D000018 ORTHO05D005005 5.8e-19 97.8 77 63.6
AUR62038234 Chenopodium quinoa HOM05D000018 ORTHO05D005005 5.8e-19 97.8 178 32.6
A09p43270 Brassica napus HOM05D000018 ORTHO05D005005 7.5e-19 97.4 76 63.2
BraA09t39797Z Brassica rapa HOM05D000018 ORTHO05D005005 7.5e-19 97.4 76 63.2
CANSAT25G3356 Cannabis sativa HOM05D000018 ORTHO05D005005 7.5e-19 97.4 77 63.6
Mapoly0011s0097 Marchantia polymorpha HOM05D000018 ORTHO05D005005 7.5e-19 97.4 67 62.7
Aa31LG4G18500 Aethionema arabicum HOM05D000018 ORTHO05D005005 9.8e-19 97.1 76 61.8
BcaC07g39481 Brassica carinata HOM05D000018 ORTHO05D005005 1.7e-18 96.3 76 61.8
C08p25260 Brassica napus HOM05D000018 ORTHO05D005005 2.2e-18 95.9 76 61.8
BolC8t50148H Brassica oleracea HOM05D000018 ORTHO05D005005 2.2e-18 95.9 76 61.8
Nitab4.5_0000022g0060 Nicotiana tabacum HOM05D000018 ORTHO05D005005 2.9e-18 95.5 195 35.9
Glyma.17G169100 Glycine max HOM05D000018 ORTHO05D005005 3.7e-18 95.1 71 63.4
HPP92_015821 Vanilla planifolia HOM05D000018 ORTHO05D005005 4.9e-18 94.7 67 61.2
Atru.chr3.273 Acer truncatum HOM05D000018 ORTHO05D005005 3.2e-17 92.0 70 58.6
BcaB01g00689 Brassica carinata HOM05D000018 ORTHO05D005005 2.7e-16 89.0 73 58.9
AT3G49630 Arabidopsis thaliana HOM05D000018 ORTHO05D005005 4.6e-16 88.2 73 57.5
Carub.0005s1595 Capsella rubella HOM05D000018 ORTHO05D005005 4.6e-16 88.2 75 60.0
Thhalv10010531m.g Eutrema salsugineum HOM05D000018 ORTHO05D005005 4.6e-16 88.2 73 60.3
AagrBONN_evm.TU.Sc2ySwM_117.288 Anthoceros agrestis HOM05D000018 ORTHO05D005005 6.0e-16 87.8 67 59.7
BcaC07g39426 Brassica carinata HOM05D000018 ORTHO05D005005 6.0e-16 87.8 73 57.5
C08p24650 Brassica napus HOM05D000018 ORTHO05D005005 6.0e-16 87.8 73 57.5
BolC8t50080H Brassica oleracea HOM05D000018 ORTHO05D005005 6.0e-16 87.8 73 57.5
AL5G29480 Arabidopsis lyrata HOM05D000018 ORTHO05D005005 7.8e-16 87.4 73 57.5
AL8G22460 Arabidopsis lyrata HOM05D000018 ORTHO05D005005 7.8e-16 87.4 73 57.5
CARHR158660 Cardamine hirsuta HOM05D000018 ORTHO05D005005 7.8e-16 87.4 73 60.3
AT3G49620 Arabidopsis thaliana HOM05D000018 ORTHO05D005005 1.3e-15 86.7 73 57.5
A01p24610 Brassica napus HOM05D000018 ORTHO05D005005 2.3e-15 85.9 73 54.8
BraA01t02372Z Brassica rapa HOM05D000018 ORTHO05D005005 2.3e-15 85.9 73 54.8
A06p18070 Brassica napus HOM05D000018 ORTHO05D005005 3.0e-15 85.5 73 58.9
BraA06t24897Z Brassica rapa HOM05D000018 ORTHO05D005005 3.0e-15 85.5 73 58.9
Pp3c21_1290 Physcomitrium patens HOM05D000018 ORTHO05D005005 3.9e-15 85.1 68 55.9
Sp5g12480 Schrenkiella parvula HOM05D000018 ORTHO05D005005 3.9e-15 85.1 74 58.1
BcaB05g23136 Brassica carinata HOM05D000018 ORTHO05D005005 6.6e-15 84.3 73 56.2
CARHR158650 Cardamine hirsuta HOM05D000018 ORTHO05D005005 1.9e-14 82.8 74 54.1
SEGI_14288 Sequoiadendron giganteum HOM05D000018 ORTHO05D005005 3.3e-14 82.0 67 53.7
SalBow1G7116 Salvia bowleyana HOM05D000018 ORTHO05D005005 7.3e-14 80.9 242 27.7
Zm00001eb418230 Zea mays HOM05D000018 ORTHO05D005005 2.1e-13 79.3 62 51.6
SMO347G0618 Selaginella moellendorffii HOM05D000018 ORTHO05D005005 4.7e-13 78.2 67 52.2
Carub.0005s1596 Capsella rubella HOM05D000018 ORTHO05D005005 1.4e-12 76.6 73 52.1
Atru.chr3.269 Acer truncatum HOM05D000018 ORTHO05D005005 2.0e-11 72.8 64 53.1
Duzib147G1136 Durio zibethinus HOM05D000018 ORTHO05D005005 2.0e-11 72.8 248 26.2
FAN19G2018 Fragaria x ananassa HOM05D000018 ORTHO05D005005 2.0e-11 72.8 230 27.0
AUR62038233 Chenopodium quinoa HOM05D000018 ORTHO05D005005 8.3e-10 67.4 67 49.3
Cre10.g466700 Chlamydomonas reinhardtii HOM05D001438 ORTHO05D001336 1.4e-09 66.6 62 50.0
Sc03g0001770 Simmondsia chinensis HOM05D000018 ORTHO05D005005 2.4e-09 65.9 44 63.6
Nitab4.5_0001603g0100 Nicotiana tabacum HOM05D000018 ORTHO05D005005 3.2e-09 65.5 65 53.8
FAN28G0683 Fragaria x ananassa HOM05D000018 ORTHO05D005005 4.1e-09 65.1 42 66.7
Lj4C155T10 Lonicera japonica HOM05D000018 ORTHO05D005005 4.6e-08 61.6 39 59.0
CSS0027842 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D005005 6.0e-08 61.2 44 59.1
CAN.G255.5 Capsicum annuum HOM05D000018 ORTHO05D005005 1.3e-07 60.1 66 51.5
RcHm_v2.0_Chr2g0106331 Rosa chinensis HOM05D000018 ORTHO05D005005 1.7e-07 59.7 44 54.5
CAN.G26.26 Capsicum annuum HOM05D000018 ORTHO05D005005 3.0e-07 58.9 44 65.9
PRCOL_00006661 Prasinoderma coloniale HOM05D000018 ORTHO05D005005 5.1e-07 58.2 78 38.5
FAN23G0999 Fragaria x ananassa HOM05D000018 ORTHO05D005005 6.6e-07 57.8 44 52.3
FAN28G2328 Fragaria x ananassa HOM05D000018 ORTHO05D005005 6.6e-07 57.8 44 52.3
CAN.G805.4 Capsicum annuum HOM05D000018 ORTHO05D005005 2.5e-06 55.8 45 62.2
TPR.G14588 Trifolium pratense HOM05D000018 ORTHO05D005005 3.3e-06 55.5 43 53.5
Gohir.D03G024875 Gossypium hirsutum HOM05D000018 ORTHO05D005005 4.3e-06 55.1 44 52.3
Hund06194 Selenicereus undatus HOM05D000018 ORTHO05D001172 9.5e-06 53.9 72 41.7


User provided reference genes

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