Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 1.0e-157 560.1 290 100.0
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 1.2e-142 510.0 301 90.0
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 5.3e-130 468.0 293 84.3
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 9.0e-130 467.2 293 84.3
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 9.0e-130 467.2 293 84.3
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 1.2e-129 466.8 289 84.1
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 1.2e-126 456.8 292 83.2
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 3.9e-85 318.9 304 58.6
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 3.3e-84 315.8 304 58.9
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 7.0e-82 308.1 302 58.9
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 1.6e-81 307.0 300 56.7
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 6.5e-80 301.6 346 52.6
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 2.5e-79 299.7 303 57.4
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 3.2e-79 299.3 297 57.9
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 3.6e-78 295.8 296 58.4
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 4.7e-78 295.4 301 56.1
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 9.7e-76 287.7 318 53.1
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.4e-74 283.1 296 53.0
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 1.7e-72 276.9 297 53.9
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 9.4e-71 271.2 307 51.5
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.2e-70 270.8 308 52.3
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 1.6e-70 270.4 298 51.7
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 2.7e-70 269.6 299 50.8
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.7e-70 269.6 303 51.2
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 1.4e-69 267.3 292 53.1
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 2.6e-68 263.1 264 56.1
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 3.4e-68 262.7 296 50.7
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 5.7e-68 261.9 305 50.2
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 2.8e-67 259.6 296 50.0
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 8.3e-67 258.1 300 51.0
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 8.3e-67 258.1 299 51.2
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 1.1e-66 257.7 298 52.0
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 1.8e-66 256.9 292 52.1
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 9.1e-66 254.6 304 49.7
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 9.1e-66 254.6 295 51.5
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 1.2e-65 254.2 329 48.0
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 3.5e-65 252.7 304 49.0
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 1.7e-64 250.4 311 48.9
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 2.9e-64 249.6 290 49.7
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 6.5e-64 248.4 298 49.7
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 2.5e-63 246.5 325 46.8
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 9.5e-63 244.6 289 50.5
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 9.5e-63 244.6 311 47.9
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 1.2e-62 244.2 302 48.3
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 1.2e-62 244.2 304 48.4
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 2.1e-62 243.4 311 47.6
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 2.1e-62 243.4 322 46.9
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 3.6e-62 242.7 295 46.4
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 4.7e-62 242.3 303 48.5
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 6.1e-62 241.9 303 47.2
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 8.0e-62 241.5 298 48.7
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 8.0e-62 241.5 294 48.3
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.0e-61 241.1 296 47.6
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 1.8e-61 240.4 295 46.1
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 2.3e-61 240.0 305 46.6
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 5.2e-61 238.8 295 46.8
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 5.2e-61 238.8 343 44.3
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 1.2e-60 237.7 340 43.8
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 1.5e-60 237.3 309 46.6
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 2.0e-60 236.9 216 60.2
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 2.6e-60 236.5 324 45.4
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 4.4e-60 235.7 299 48.2
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 5.7e-60 235.3 325 44.6
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 5.7e-60 235.3 304 46.7
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 2.8e-59 233.0 249 53.0
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 8.3e-59 231.5 290 46.6
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 1.1e-58 231.1 315 44.4
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 1.4e-58 230.7 300 46.3
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 1.8e-58 230.3 305 44.3
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 2.4e-58 229.9 313 44.1
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 7.0e-58 228.4 307 44.6
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 1.2e-57 227.6 327 46.2
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 2.7e-57 226.5 297 46.5
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 2.7e-57 226.5 321 45.5
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 2.9e-56 223.0 306 45.1
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 8.6e-56 221.5 308 44.5
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 1.1e-55 221.1 304 44.4
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 1.1e-55 221.1 295 44.7
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 1.5e-55 220.7 292 45.2
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 1.9e-55 220.3 298 46.6
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 2.5e-55 219.9 307 44.3
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 3.3e-55 219.5 300 49.0
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 1.2e-54 217.6 305 43.0
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 1.6e-54 217.2 298 46.3
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 2.8e-54 216.5 310 43.2
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 3.6e-54 216.1 310 41.6
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 1.8e-53 213.8 229 52.0
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 2.3e-53 213.4 298 43.3
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 3.0e-53 213.0 322 42.9
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 5.2e-53 212.2 363 41.0
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 2.6e-52 209.9 316 40.5
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 3.4e-52 209.5 301 44.2
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 3.4e-52 209.5 301 44.2
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 3.4e-52 209.5 316 41.8
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 4.4e-52 209.1 319 42.9
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 4.4e-52 209.1 319 42.9
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 4.4e-52 209.1 319 42.9
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 4.4e-52 209.1 217 52.1
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 5.7e-52 208.8 320 44.1
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 9.8e-52 208.0 310 42.6
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 9.8e-52 208.0 303 41.9
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 3.7e-51 206.1 313 41.9
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 3.7e-51 206.1 299 43.8
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 4.9e-51 205.7 307 41.0
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 2.4e-50 203.4 297 42.1
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 3.2e-50 203.0 306 44.1
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 3.2e-50 203.0 306 44.1
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 7.0e-50 201.8 291 41.9
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 7.0e-50 201.8 308 41.2
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 2.0e-49 200.3 301 42.5
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 1.0e-48 198.0 222 50.5
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 1.0e-48 198.0 293 42.3
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 1.0e-48 198.0 311 41.8
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 2.3e-48 196.8 232 48.3
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 3.0e-48 196.4 302 42.7
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 5.0e-48 195.7 272 46.0
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 8.6e-48 194.9 315 40.3
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 1.1e-47 194.5 296 42.6
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.3e-47 193.0 239 45.6
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 4.7e-46 189.1 312 40.4
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 3.1e-45 186.4 304 42.1
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 2.9e-43 179.9 316 38.9
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 9.2e-42 174.9 366 33.9
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 4.6e-41 172.6 249 43.4
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 4.6e-41 172.6 292 40.1
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 5.0e-40 169.1 309 40.1
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 6.6e-40 168.7 157 58.6
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 5.8e-36 155.6 299 35.8
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 2.4e-34 150.2 270 36.7
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.4e-34 150.2 305 34.8
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 2.7e-33 146.7 144 56.2
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 6.0e-33 145.6 326 35.0
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 4.0e-29 132.9 301 37.2
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 4.0e-29 132.9 301 37.2
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 1.1e-26 124.8 286 37.1
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 3.2e-26 123.2 134 53.0
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 7.8e-25 118.6 217 39.6
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 1.3e-24 117.9 367 31.3
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 3.0e-24 116.7 153 46.4
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.4e-21 107.8 377 28.1
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 8.9e-21 105.1 91 59.3
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.0e-20 104.0 358 30.2
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 6.4e-19 99.0 335 29.6
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.9e-18 97.4 348 29.9
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.4e-18 97.1 354 29.1
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.0e-16 90.1 381 26.5
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 3.9e-16 89.7 343 26.8
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 1.1e-15 88.2 60 75.0
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 1.9e-15 87.4 113 45.1
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 6.2e-14 82.4 168 35.1
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 5.4e-10 69.3 175 32.0
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 6.0e-09 65.9 258 27.5
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 3.9e-08 63.2 139 35.3
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 8.7e-08 62.0 86 48.8
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.5e-07 61.2 202 28.2
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 9.6e-07 58.5 260 27.3


User provided reference genes

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