Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 2367.8 1197 100.0
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 2281.5 1218 95.4
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 2149.4 1219 89.7
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 2149.4 1219 89.8
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 2148.6 1219 89.9
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 2140.5 1205 90.9
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1867.0 1234 78.4
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1835.8 1237 77.2
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1832.0 1234 76.9
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1814.3 1237 76.3
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1806.2 1233 75.3
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1797.7 1233 74.9
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1781.9 1233 74.0
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1781.1 1238 74.4
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1773.4 1231 74.2
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1772.3 1236 74.3
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1768.8 1236 74.2
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1761.5 1320 71.2
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1759.6 1234 75.1
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1759.2 1231 73.4
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1755.7 1320 71.1
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1755.7 1320 71.1
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1750.7 1234 72.9
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1748.8 1232 73.3
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1748.4 1237 73.0
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1747.6 1237 73.2
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1745.7 1232 73.3
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1744.2 1236 72.6
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1737.6 1230 73.4
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1734.9 1235 72.5
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1730.7 1327 69.0
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1727.2 1226 73.0
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1726.1 1233 72.3
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1725.7 1232 72.2
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1724.9 1229 72.5
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1724.5 1231 72.3
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1723.0 1234 72.3
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1722.6 1233 72.5
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1719.9 1235 72.3
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1719.9 1233 72.3
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1718.7 1235 72.1
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1715.7 1227 71.6
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1715.7 1221 72.0
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1714.1 1237 71.8
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1710.7 1237 72.0
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1709.9 1235 71.9
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1705.6 1237 71.5
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1705.6 1229 72.3
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1704.9 1237 71.6
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1703.7 1232 71.9
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1698.3 1236 72.3
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1696.0 1242 70.9
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1696.0 1228 71.5
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1694.1 1228 71.6
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1693.7 1235 71.5
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1693.3 1228 71.5
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1692.2 1228 71.6
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1691.0 1228 71.5
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1690.2 1236 70.8
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1689.5 1377 67.3
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1688.3 1228 71.3
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1685.2 1227 71.1
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1681.8 1235 71.0
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1679.5 1232 71.3
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1679.1 1228 70.4
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1678.7 1228 70.4
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1676.8 1228 70.7
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1676.4 1230 71.1
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1675.2 1227 70.7
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1670.2 1227 70.4
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1670.2 1231 71.0
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1669.4 1228 70.7
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1668.7 1230 70.6
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1667.5 1230 70.5
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1667.5 1162 74.5
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1664.0 1228 70.7
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1657.5 1216 70.6
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1633.2 1232 68.5
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1629.0 1224 70.5
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1622.4 1240 67.5
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1619.0 1130 74.9
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1613.2 1232 68.5
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1606.3 1219 69.5
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1575.5 1233 67.8
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1553.9 1246 65.9
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1528.5 1229 66.0
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1508.8 1221 64.0
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1508.4 1073 73.1
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1498.0 1075 71.5
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1493.0 1075 71.2
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1485.7 1227 63.0
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1461.4 1045 73.0
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1449.9 1240 61.3
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1421.0 996 73.4
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1415.2 1007 72.4
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1408.7 1001 72.8
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1401.7 1056 70.4
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1366.3 915 77.4
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1356.3 1065 65.8
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1289.6 948 70.7
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1258.0 859 74.9
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1226.8 1248 52.5
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1197.2 904 67.8
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1153.7 1257 50.7
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.9e-307 1058.9 936 60.6
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 1.0e-304 1050.4 1241 47.5
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 7.6e-300 1034.2 1242 47.0
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 9.1e-261 904.4 1219 42.7
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 2.7e-257 892.9 1360 40.1
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 1.3e-235 820.8 533 80.1
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.7e-233 812.4 1254 39.3
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.3e-218 763.1 1163 39.7
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 3.5e-188 663.3 442 77.8
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.4e-147 528.5 497 60.4
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 8.8e-147 525.8 756 42.7
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 1.0e-142 512.3 429 63.6
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 1.8e-128 464.9 321 72.6
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 4.5e-127 460.3 339 69.6
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 1.9e-125 454.9 347 68.0
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 6.1e-116 423.3 338 63.9
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 2.5e-109 401.4 346 65.3
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 1.1e-104 386.0 309 64.1
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 1.7e-102 378.6 307 66.4
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 2.0e-95 355.1 379 50.9
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 1.0e-86 326.2 289 54.7
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 3.4e-82 311.2 389 49.1
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 3.8e-81 307.8 270 62.2
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 4.3e-61 241.1 161 72.0
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 5.6e-61 240.7 262 50.8
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 2.1e-47 195.7 116 77.6
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 5.1e-46 191.0 115 76.5
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 3.7e-44 184.9 163 57.1
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 1.4e-43 183.0 148 66.2
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.4e-43 182.2 138 60.9
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 6.5e-41 174.1 132 70.5
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.7e-36 159.5 194 48.5
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 4.8e-36 157.9 732 25.4
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 7.7e-34 150.6 162 52.5
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 5.0e-33 147.9 268 37.3
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.4e-30 139.8 81 81.5
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.2e-26 126.7 163 44.2
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 1.6e-18 99.8 74 62.2
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 9.4e-16 90.5 59 71.2
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 4.7e-15 88.2 62 69.4
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.3e-14 85.9 233 31.8
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 7.5e-13 80.9 47 74.5
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.2e-10 73.6 45 66.7
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 1.6e-10 73.2 68 64.7
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 3.5e-10 72.0 84 58.3
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 3.5e-10 72.0 84 58.3
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 7.7e-10 70.9 55 63.6
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 9.4e-08 63.9 35 80.0
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.0e-06 60.5 77 48.1


User provided reference genes

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