Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003790g0070 Nicotiana tabacum HOM05D000347 ORTHO05D008062 9.4e-59 229.9 113 100.0
Nitab4.5_0000866g0010 Nicotiana tabacum HOM05D000347 ORTHO05D008062 1.6e-53 212.6 114 93.9
Solyc09g061715.1 Solanum lycopersicum HOM05D000347 ORTHO05D008062 2.9e-36 155.2 115 73.0
Sopen09g024710 Solanum pennellii HOM05D000347 ORTHO05D008062 2.9e-36 155.2 115 73.0
PGSC0003DMG400003422 Solanum tuberosum HOM05D000347 ORTHO05D008062 2.9e-36 155.2 115 73.0
QL09p044668 Quercus lobata HOM05D000347 ORTHO05D008062 2.6e-32 142.1 113 67.3
Cc01_g17250 Coffea canephora HOM05D000347 ORTHO05D008062 1.3e-31 139.8 115 67.8
CSS0034279 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D008062 4.9e-31 137.9 114 62.3
Migut.D00520 Erythranthe guttata HOM05D000347 ORTHO05D008062 1.8e-30 136.0 116 64.7
Actinidia37581 Actinidia chinensis HOM05D000347 ORTHO05D008062 5.4e-30 134.4 113 63.7
SGA_v2.0_scaffold1G00715 Striga asiatica HOM05D000347 ORTHO05D008062 1.2e-29 133.3 113 61.9
Manes.12G042000 Manihot esculenta HOM05D000347 ORTHO05D008062 5.9e-29 131.0 113 66.4
Thecc.01G228300 Theobroma cacao HOM05D000347 ORTHO05D008062 1.7e-28 129.4 116 62.9
GSVIVG01028561001 Vitis vinifera HOM05D000347 ORTHO05D008062 2.9e-28 128.6 113 63.7
Prupe.8G205000 Prunus persica HOM05D000347 ORTHO05D000694 3.8e-28 128.3 113 62.8
RcHm_v2.0_Chr6g0285151 Rosa chinensis HOM05D000347 ORTHO05D008062 6.6e-28 127.5 114 64.9
MD05G1178500 Malus domestica HOM05D000347 ORTHO05D008062 8.6e-28 127.1 113 64.6
Dinv19218 Davidia involucrata HOM05D000347 ORTHO05D008062 1.9e-27 125.9 114 64.0
Actinidia30090 Actinidia chinensis HOM05D000347 ORTHO05D008062 2.5e-27 125.6 113 61.1
FAN15G1475 Fragaria x ananassa HOM05D000347 ORTHO05D000694 5.6e-27 124.4 114 64.0
FAN24G2098 Fragaria x ananassa HOM05D000347 ORTHO05D000694 5.6e-27 124.4 114 64.9
FvH4_2g19360 Fragaria vesca HOM05D000347 ORTHO05D008062 7.3e-27 124.0 114 64.9
Rhsim13G0044000 Rhododendron simsii HOM05D000347 ORTHO05D008062 1.2e-26 123.2 114 61.4
Ciclev10021356m.g Citrus clementina HOM05D000347 ORTHO05D008062 1.6e-26 122.9 118 61.0
Hma1.2p1_0351F.1_g132820 Hydrangea macrophylla HOM05D000347 ORTHO05D008062 2.1e-26 122.5 114 61.4
MD10G1166700 Malus domestica HOM05D000347 ORTHO05D008062 4.7e-26 121.3 113 61.1
FAN27G2014 Fragaria x ananassa HOM05D000347 ORTHO05D008062 6.1e-26 120.9 114 62.3
SalBow4G1846 Salvia bowleyana HOM05D000347 ORTHO05D008062 6.1e-26 120.9 114 61.4
Potri.002G240300 Populus trichocarpa HOM05D000347 ORTHO05D008062 4.0e-25 118.2 113 57.5
vmacro02746 Vaccinium macrocarpon HOM05D000347 ORTHO05D008062 6.8e-25 117.5 115 58.3
Oeu018505.1 Olea europaea HOM05D000879 ORTHO05D002043 1.2e-24 116.7 117 59.8
Sabra02G0183100 Salix brachista HOM05D000347 ORTHO05D008062 1.2e-24 116.7 113 57.5
TWI18G0408 Tripterygium wilfordii HOM05D000347 ORTHO05D008062 1.2e-24 116.7 81 76.5
VMungo1383G0854 Vigna mungo HOM05D000347 ORTHO05D008062 1.2e-24 116.7 113 59.3
Eucgr.H00807 Eucalyptus grandis HOM05D000347 ORTHO05D008062 3.4e-24 115.2 113 57.5
Phvul.008G123300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 5.7e-24 114.4 113 58.4
CANSAT01G0926 Cannabis sativa HOM05D000347 ORTHO05D008062 9.8e-24 113.6 119 56.3
Glyma.08G356200 Glycine max HOM05D000347 ORTHO05D008062 9.8e-24 113.6 117 57.3
Medtr0027s0180 Medicago truncatula HOM05D000347 ORTHO05D008062 9.8e-24 113.6 118 59.3
Medtr7g059080 Medicago truncatula HOM05D000347 ORTHO05D008062 9.8e-24 113.6 118 59.3
PGR083G0949 Punica granatum HOM05D000347 ORTHO05D008062 2.9e-23 112.1 114 57.9
Glyma.18G173300 Glycine max HOM05D000347 ORTHO05D008062 3.7e-23 111.7 115 56.5
Gohir.A11G136100 Gossypium hirsutum HOM05D000347 ORTHO05D008062 4.9e-23 111.3 116 57.8
Gohir.D11G142500 Gossypium hirsutum HOM05D000347 ORTHO05D008062 4.9e-23 111.3 116 57.8
Gorai.007G152800 Gossypium raimondii HOM05D000347 ORTHO05D008062 4.9e-23 111.3 116 57.8
TPR.G15284 Trifolium pratense HOM05D000347 ORTHO05D008062 6.4e-23 110.9 113 57.5
CiPaw.04G106800 Carya illinoinensis HOM05D000347 ORTHO05D000694 1.8e-22 109.4 113 55.8
HanXRQChr01g0014681 Helianthus annuus HOM05D000347 ORTHO05D008062 2.4e-22 109.0 113 54.9
Psat3g142320 Pisum sativum HOM05D000347 ORTHO05D008062 5.4e-22 107.8 113 54.0
Aqoxy2G03776 Aquilegia oxysepala HOM05D000347 ORTHO05D008062 2.7e-21 105.5 125 50.4
CiPaw.03G151400 Carya illinoinensis HOM05D000347 ORTHO05D008062 5.9e-21 104.4 115 54.8
TAR365G0021 Trochodendron aralioides HOM05D000347 ORTHO05D008062 7.8e-21 104.0 128 50.0
Lj1g0023077 Lotus japonicus HOM05D000347 ORTHO05D008062 1.3e-20 103.2 113 54.0
Actinidia23733 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.7e-20 102.8 115 55.7
TAR636G2566 Trochodendron aralioides HOM05D000347 ORTHO05D008062 2.3e-20 102.4 129 49.6
MSTRG.21431 Avicennia marina HOM05D000347 ORTHO05D008062 3.0e-20 102.1 113 51.3
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 3.0e-20 102.1 115 55.7
MELO3C018065.2 Cucumis melo HOM05D000347 ORTHO05D008062 3.9e-20 101.7 114 53.5
Lsat_1_v5_gn_5_179760 Lactuca sativa HOM05D000347 ORTHO05D008062 3.9e-20 101.7 114 50.9
Cpa.g.sc8.175 Carica papaya HOM05D000347 ORTHO05D008062 5.0e-20 101.3 117 55.6
Ca_07542_v3 Cicer arietinum L. HOM05D000347 ORTHO05D008062 6.6e-20 100.9 113 48.7
Atru.chr5.2056 Acer truncatum HOM05D000347 ORTHO05D008062 8.6e-20 100.5 113 49.6
Sopen06g034940 Solanum pennellii HOM05D000347 ORTHO05D008062 1.9e-19 99.4 116 53.4
TAR365G1261 Trochodendron aralioides HOM05D000347 ORTHO05D008062 4.3e-19 98.2 74 67.6
Sed0024241 Sechium edule HOM05D000347 ORTHO05D008062 9.5e-19 97.1 113 49.6
Solyc06g083560.3 Solanum lycopersicum HOM05D000347 ORTHO05D008062 2.1e-18 95.9 117 53.0
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 2.8e-18 95.5 115 51.3
CsaV3_3G028770 Cucumis sativus L. HOM05D000347 ORTHO05D008062 2.8e-18 95.5 115 54.8
Lalb_Chr03g0041901 Lupinus albus HOM05D000347 ORTHO05D008062 8.0e-18 94.0 114 47.4
Sed0024927 Sechium edule HOM05D000901 ORTHO05D008062 1.1e-17 93.6 113 49.6
Sc24g0003600 Simmondsia chinensis HOM05D000347 ORTHO05D008062 1.4e-14 83.2 72 62.5
Peaxi162Scf00517g00428 Petunia axillaris HOM05D000347 ORTHO05D008062 5.4e-14 81.3 115 45.2
Nn1g07779 Nelumbo nucifera HOM05D000347 ORTHO05D008062 1.6e-13 79.7 122 43.4
Oeu058867.1 Olea europaea HOM05D000347 ORTHO05D008062 3.5e-13 78.6 68 61.8
AUR62008877 Chenopodium quinoa HOM05D000347 ORTHO05D008062 1.0e-12 77.0 69 62.3
Lj3g0009150 Lotus japonicus HOM05D000347 ORTHO05D008062 1.7e-12 76.3 113 42.5
DCAR_018551 Daucus carota HOM05D000347 ORTHO05D008062 1.9e-11 72.8 114 42.1
AUR62031831 Chenopodium quinoa HOM05D000347 ORTHO05D008062 2.5e-11 72.4 69 60.9
AL3G40480 Arabidopsis lyrata HOM05D011699 ORTHO05D008062 5.6e-11 71.2 122 41.8
DCAR_004713 Daucus carota HOM05D000347 ORTHO05D008062 9.5e-11 70.5 114 43.0
Lalb_Chr01g0022451 Lupinus albus HOM05D000347 ORTHO05D008062 1.6e-10 69.7 113 40.7
arahy.Tifrunner.gnm1.ann1.W0YDFD Arachis hypogaea HOM05D000347 ORTHO05D008062 2.1e-10 69.3 118 39.8
arahy.Tifrunner.gnm1.ann1.54FW37 Arachis hypogaea HOM05D000347 ORTHO05D008062 4.7e-10 68.2 118 39.8
Peaxi162Scf02141g00004 Petunia axillaris HOM05D000347 ORTHO05D008062 8.1e-10 67.4 43 76.7
AT3G24750 Arabidopsis thaliana HOM05D011699 ORTHO05D008062 1.4e-09 66.6 122 39.3
Nitab4.5_0002085g0080 Nicotiana tabacum HOM05D000347 ORTHO05D008062 2.3e-09 65.9 114 40.4
ECA248G1409 Erigeron canadensis HOM05D000102 ORTHO05D000138 3.1e-09 65.5 75 52.0
Gohir.D08G211800 Gossypium hirsutum HOM05D000347 ORTHO05D008062 5.2e-09 64.7 118 37.3
Gorai.004G225100 Gossypium raimondii HOM05D000347 ORTHO05D008062 6.8e-09 64.3 118 37.3
Glyma.16G094000 Glycine max HOM05D000347 ORTHO05D008062 8.9e-09 63.9 113 36.3
Sp3g22490 Schrenkiella parvula HOM05D011699 ORTHO05D008062 8.9e-09 63.9 120 41.7
Carub.0003s2514 Capsella rubella HOM05D011699 ORTHO05D008062 1.5e-08 63.2 125 40.8
MBI07_g21075_MAGBIO Magnolia biondii HOM05D000347 ORTHO05D008062 1.5e-08 63.2 74 56.8
BcaB06g26692 Brassica carinata HOM05D011699 ORTHO05D008062 2.0e-08 62.8 118 41.5
A07p07520 Brassica napus HOM05D011699 ORTHO05D008062 2.0e-08 62.8 118 40.7
BraA07t28543Z Brassica rapa HOM05D011699 ORTHO05D008062 2.0e-08 62.8 118 40.7
Thhalv10002691m.g Eutrema salsugineum HOM05D011699 ORTHO05D008062 2.6e-08 62.4 120 41.7
Gohir.A08G194000 Gossypium hirsutum HOM05D000347 ORTHO05D008062 4.4e-08 61.6 118 35.6
BcaC06g35749 Brassica carinata HOM05D011699 ORTHO05D008062 5.8e-08 61.2 118 40.7
C07p11290 Brassica napus HOM05D011699 ORTHO05D008062 5.8e-08 61.2 118 40.7
BolC7t41607H Brassica oleracea HOM05D011699 ORTHO05D008062 5.8e-08 61.2 118 40.7
Ah.08g214040 Amaranthus hybridus HOM05D000901 ORTHO05D008062 1.7e-07 59.7 68 55.9
VMungo0331G1006 Vigna mungo HOM05D000347 ORTHO05D008062 3.7e-07 58.5 113 34.5
Sc05g0002410 Simmondsia chinensis HOM05D000347 ORTHO05D008062 4.9e-07 58.2 118 42.4
Nitab4.5_0006773g0040 Nicotiana tabacum HOM05D000347 ORTHO05D008062 6.4e-07 57.8 51 56.9


User provided reference genes

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