Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003782g0160 Nicotiana tabacum HOM05D002453 ORTHO05D002107 8.5e-140 500.4 259 100.0
Nitab4.5_0003782g0100 Nicotiana tabacum HOM05D002453 ORTHO05D002107 6.2e-66 255.0 135 94.1
Nitab4.5_0003782g0120 Nicotiana tabacum HOM05D002453 ORTHO05D002107 1.3e-63 247.3 135 88.9
Nitab4.5_0003782g0150 Nicotiana tabacum HOM05D002453 ORTHO05D002107 2.5e-62 243.0 134 88.1
Nitab4.5_0000610g0200 Nicotiana tabacum HOM05D002453 ORTHO05D002107 4.3e-59 232.3 135 84.4
PGSC0003DMG400015540 Solanum tuberosum HOM05D002453 ORTHO05D002107 1.1e-51 207.6 135 76.3
Solyc11g073230.1 Solanum lycopersicum HOM05D002453 ORTHO05D002107 3.8e-47 192.6 137 69.3
Sopen11g030860 Solanum pennellii HOM05D002453 ORTHO05D002107 8.5e-47 191.4 137 69.3
CAN.G423.43 Capsicum annuum HOM05D002453 ORTHO05D002107 2.3e-44 183.3 135 66.7
Peaxi162Scf00406g00240 Petunia axillaris HOM05D002453 ORTHO05D002107 6.3e-34 148.7 124 64.5
Lj1P161T35 Lonicera japonica HOM05D002453 ORTHO05D002107 8.8e-28 128.3 119 55.5
DCAR_014720 Daucus carota HOM05D004271 ORTHO05D002107 9.7e-27 124.8 138 47.1
TWI31G0770 Tripterygium wilfordii HOM05D004271 ORTHO05D002107 9.7e-27 124.8 109 51.4
Dinv26279 Davidia involucrata HOM05D000970 ORTHO05D000788 2.2e-26 123.6 109 54.1
CSS0034590 Camellia sinensis var. sinensis HOM05D004271 ORTHO05D002107 7.0e-25 118.6 116 51.7
GSVIVG01025047001 Vitis vinifera HOM05D007197 ORTHO05D009064 7.0e-25 118.6 163 44.8
Prupe.6G086400 Prunus persica HOM05D002453 ORTHO05D002107 1.6e-24 117.5 126 45.2
EL10Ac7g15952 Beta vulgaris HOM05D000970 ORTHO05D000788 3.5e-24 116.3 106 53.8
Nn7g38347 Nelumbo nucifera HOM05D002453 ORTHO05D002107 3.5e-24 116.3 114 48.2
Nn7g38348 Nelumbo nucifera HOM05D002453 ORTHO05D002107 3.5e-24 116.3 114 48.2
FvH4_3g34780 Fragaria vesca HOM05D002453 ORTHO05D002107 5.9e-24 115.5 114 45.6
FAN11G0465 Fragaria x ananassa HOM05D002453 ORTHO05D002107 5.9e-24 115.5 114 45.6
Lsat_1_v5_gn_8_78700 Lactuca sativa HOM05D002453 ORTHO05D002107 7.7e-24 115.2 91 59.3
FAN16G3353 Fragaria x ananassa HOM05D004271 ORTHO05D002107 1.3e-23 114.4 114 45.6
FAN21G3973 Fragaria x ananassa HOM05D002453 ORTHO05D002107 1.3e-23 114.4 114 45.6
QL01p033616 Quercus lobata HOM05D004271 ORTHO05D002107 1.3e-23 114.4 143 44.8
RcHm_v2.0_Chr5g0062521 Rosa chinensis HOM05D004271 ORTHO05D006011 2.2e-23 113.6 108 48.1
Cfa011434 Carpinus fangiana HOM05D002453 ORTHO05D002107 2.9e-23 113.2 111 50.5
Haze_24017 Corylus avellana HOM05D002453 ORTHO05D002107 2.9e-23 113.2 125 45.6
AT1G07740 Arabidopsis thaliana HOM05D004271 ORTHO05D002107 3.8e-23 112.8 112 50.0
Rhsim01G0224000 Rhododendron simsii HOM05D004271 ORTHO05D006011 6.5e-23 112.1 159 44.0
Thecc.09G329000 Theobroma cacao HOM05D002453 ORTHO05D002107 6.5e-23 112.1 110 54.5
Atru.chr3.3808 Acer truncatum HOM05D002453 ORTHO05D002107 8.5e-23 111.7 117 47.0
CiPaw.05G179100 Carya illinoinensis HOM05D002453 ORTHO05D002107 8.5e-23 111.7 125 46.4
Migut.N02658 Erythranthe guttata HOM05D007197 ORTHO05D009064 1.5e-22 110.9 124 46.8
Ciclev10030177m.g Citrus clementina HOM05D000970 ORTHO05D000788 2.5e-22 110.2 100 52.0
CARHR007530 Cardamine hirsuta HOM05D004271 ORTHO05D006011 3.2e-22 109.8 122 47.5
PGR083G1337 Punica granatum HOM05D002453 ORTHO05D002107 3.2e-22 109.8 79 58.2
AL1G17960 Arabidopsis lyrata HOM05D004271 ORTHO05D002107 4.2e-22 109.4 112 48.2
Manes.11G135700 Manihot esculenta HOM05D004271 ORTHO05D006011 4.2e-22 109.4 109 46.8
AUR62001844 Chenopodium quinoa HOM05D002453 ORTHO05D002107 5.5e-22 109.0 123 48.8
HanXRQChr06g0175961 Helianthus annuus HOM05D002453 ORTHO05D002107 7.2e-22 108.6 107 52.3
C08p03350 Brassica napus HOM05D000970 ORTHO05D000788 9.4e-22 108.2 109 48.6
ECA236G2878 Erigeron canadensis HOM05D004271 ORTHO05D002107 9.4e-22 108.2 86 57.0
Duzib150G0859 Durio zibethinus HOM05D004271 ORTHO05D002107 1.2e-21 107.8 127 46.5
Prupe.6G007300 Prunus persica HOM05D002453 ORTHO05D002107 1.6e-21 107.5 125 44.0
BcaB03g13373 Brassica carinata HOM05D004271 ORTHO05D006011 2.1e-21 107.1 117 47.9
AUR62009635 Chenopodium quinoa HOM05D002453 ORTHO05D009442 3.6e-21 106.3 118 48.3
Gorai.013G265600 Gossypium raimondii HOM05D002453 ORTHO05D002107 8.0e-21 105.1 135 43.7
Aqoxy4G03056 Aquilegia oxysepala HOM05D004271 ORTHO05D006011 1.4e-20 104.4 137 43.1
Aa31sc269G30 Aethionema arabicum HOM05D004271 ORTHO05D002107 2.3e-20 103.6 115 44.3
Thhalv10009298m.g Eutrema salsugineum HOM05D004271 ORTHO05D006011 3.0e-20 103.2 115 47.0
Sed0007334 Sechium edule HOM05D002453 ORTHO05D002107 3.0e-20 103.2 124 41.9
A08p35460 Brassica napus HOM05D000970 ORTHO05D000788 5.2e-20 102.4 117 48.7
BraA08t35452Z Brassica rapa HOM05D000970 ORTHO05D000788 5.2e-20 102.4 117 48.7
MELO3C029300.2 Cucumis melo HOM05D002453 ORTHO05D002107 6.8e-20 102.1 96 49.0
MSTRG.12628 Avicennia marina HOM05D004271 ORTHO05D002107 8.8e-20 101.7 98 49.0
Cc01_g12190 Coffea canephora HOM05D000970 ORTHO05D000788 1.2e-19 101.3 110 46.4
Sp1g06450 Schrenkiella parvula HOM05D004271 ORTHO05D006011 1.5e-19 100.9 116 47.4
Carub.0011s0004 Capsella rubella HOM05D004271 ORTHO05D006011 2.0e-19 100.5 112 44.6
Eucgr.E02818 Eucalyptus grandis HOM05D004271 ORTHO05D006011 2.6e-19 100.1 142 38.7
ClCG03G016800 Citrullus lanatus HOM05D002453 ORTHO05D002107 3.4e-19 99.8 79 54.4
Ah.08g214900 Amaranthus hybridus HOM05D007197 ORTHO05D009064 4.4e-19 99.4 136 40.4
Glyma.12G067300 Glycine max HOM05D002453 ORTHO05D002107 4.4e-19 99.4 106 44.3
CANSAT11G1193 Cannabis sativa HOM05D002453 ORTHO05D002107 7.5e-19 98.6 120 44.2
CsaV3_1G039170 Cucumis sativus L. HOM05D002453 ORTHO05D002107 7.5e-19 98.6 79 53.2
Gohir.A13G229300 Gossypium hirsutum HOM05D002453 ORTHO05D002107 7.5e-19 98.6 134 41.8
VMungo1127G0605 Vigna mungo HOM05D002453 ORTHO05D002107 7.5e-19 98.6 104 44.2
CDE08G0939 Ceratophyllum demersum HOM05D002453 ORTHO05D002107 1.3e-18 97.8 97 49.5
Lj4g0009241 Lotus japonicus HOM05D004271 ORTHO05D002107 1.3e-18 97.8 106 45.3
Sc12g0001740 Simmondsia chinensis HOM05D002453 ORTHO05D002107 1.3e-18 97.8 109 50.5
Actinidia20465 Actinidia chinensis HOM05D002453 ORTHO05D002107 1.7e-18 97.4 131 40.5
SalBow3G0045 Salvia bowleyana HOM05D004271 ORTHO05D002107 1.7e-18 97.4 126 41.3
SHI05977 Sapria himalayana HOM05D004271 ORTHO05D002107 3.7e-18 96.3 152 38.8
Psat7g220120 Pisum sativum HOM05D002453 ORTHO05D002107 6.3e-18 95.5 106 46.2
Gohir.D13G234900 Gossypium hirsutum HOM05D002453 ORTHO05D002107 8.3e-18 95.1 70 61.4
Lj3g0020241 Lotus japonicus HOM05D004271 ORTHO05D002107 8.3e-18 95.1 106 43.4
Phvul.011G068200 Phaseolus vulgaris HOM05D002453 ORTHO05D002107 8.3e-18 95.1 111 41.4
SGA_v2.0_scaffold23G10039 Striga asiatica HOM05D002453 ORTHO05D002107 1.1e-17 94.7 107 39.3
Lalb_Chr01g0003871 Lupinus albus HOM05D004271 ORTHO05D002107 3.1e-17 93.2 103 42.7
Medtr4g062480 Medicago truncatula HOM05D002453 ORTHO05D002107 1.6e-16 90.9 79 50.6
Ca_19202_v3 Cicer arietinum L. HOM05D002453 ORTHO05D002107 4.5e-16 89.4 120 39.2
Potri.003G204100 Populus trichocarpa HOM05D004271 ORTHO05D002107 5.9e-16 89.0 118 39.0
MBI15_g22638_MAGBIO Magnolia biondii HOM05D004271 ORTHO05D002107 5.0e-15 85.9 79 50.6
MBI15_g35152_MAGBIO Magnolia biondii HOM05D004271 ORTHO05D002107 5.0e-15 85.9 79 50.6
Sabra03G0150700 Salix brachista HOM05D002453 ORTHO05D002107 7.2e-14 82.0 119 37.8
CAN.G764.12 Capsicum annuum HOM05D002453 ORTHO05D002107 8.9e-12 75.1 50 66.0
Cpa.g.sc252.14 Carica papaya HOM05D002453 ORTHO05D002107 5.7e-11 72.4 50 62.0
COL.COLO4_18435 Corchorus olitorius HOM05D001223 ORTHO05D001058 5.7e-11 72.4 55 63.6
TPR.G36168 Trifolium pratense HOM05D002453 ORTHO05D002107 2.8e-10 70.1 110 33.6
Oeu058523.1 Olea europaea HOM05D002453 ORTHO05D002107 3.7e-10 69.7 50 56.0
ATR0626G055 Amborella trichopoda HOM05D002453 ORTHO05D002107 5.4e-09 65.9 110 32.7
SEGI_15528 Sequoiadendron giganteum HOM05D004271 ORTHO05D006011 7.8e-08 62.0 67 38.8
DCAR_022794 Daucus carota HOM05D002986 ORTHO05D003966 3.9e-07 59.7 118 35.6
DCAR_006392 Daucus carota HOM05D002986 ORTHO05D003966 5.0e-07 59.3 138 31.9
HanXRQChr04g0120331 Helianthus annuus HOM05D002986 ORTHO05D003966 1.9e-06 57.4 146 28.8
HPP92_000749 Vanilla planifolia HOM05D002453 ORTHO05D003966 9.5e-06 55.1 93 33.3


User provided reference genes

Program Settings