Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.1e-196 689.9 371 100.0
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 8.4e-181 637.1 363 93.1
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 9.4e-116 421.0 478 54.0
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 1.2e-115 420.6 486 54.3
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 7.0e-111 404.8 476 52.5
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 1.0e-109 401.0 476 52.3
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 8.3e-96 354.8 480 48.5
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.0e-94 350.1 473 48.2
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.6e-91 340.5 488 46.7
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.4e-87 327.4 489 46.4
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 6.0e-86 322.0 463 48.2
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 1.1e-76 291.2 488 44.1
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 7.8e-70 268.5 465 41.5
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 1.1e-66 258.1 491 38.7
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 8.9e-66 255.0 472 38.3
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 4.9e-64 249.2 457 43.8
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 1.9e-63 247.3 482 38.6
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 9.3e-63 245.0 471 36.9
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.1e-62 243.8 470 38.7
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 4.6e-62 242.7 482 37.3
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 1.2e-57 228.0 490 37.8
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 1.5e-57 227.6 490 34.9
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.6e-57 226.9 420 42.4
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 1.1e-55 221.5 451 35.0
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 4.2e-55 219.5 445 38.2
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 1.8e-53 214.2 479 33.6
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 6.2e-51 205.7 477 37.7
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 8.1e-51 205.3 482 39.4
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 1.1e-50 204.9 468 37.2
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 1.4e-50 204.5 468 35.0
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.8e-50 204.1 327 43.4
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 5.3e-50 202.6 476 35.1
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 5.3e-50 202.6 459 38.1
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 6.9e-50 202.2 477 37.3
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 2.0e-49 200.7 459 34.4
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 4.5e-49 199.5 471 34.4
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 1.3e-48 198.0 453 38.0
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 4.9e-48 196.1 475 34.5
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 1.4e-47 194.5 475 35.6
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 2.4e-47 193.7 463 37.4
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 9.3e-47 191.8 467 34.3
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.2e-46 191.4 460 37.0
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 2.7e-46 190.3 255 45.5
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 1.3e-45 188.0 304 43.1
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 1.3e-45 188.0 437 34.6
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 6.7e-45 185.7 426 33.6
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 1.1e-44 184.9 419 32.9
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 2.5e-44 183.7 451 35.7
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 1.3e-43 181.4 150 60.0
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 3.7e-43 179.9 488 36.1
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 6.2e-43 179.1 473 32.8
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 8.1e-43 178.7 420 35.5
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 1.2e-41 174.9 494 32.2
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.0e-41 174.1 420 37.4
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 5.8e-41 172.6 477 31.4
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.0e-40 171.8 445 33.7
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 4.9e-40 169.5 262 43.5
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 6.5e-40 169.1 261 41.4
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 8.4e-40 168.7 494 32.2
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 8.4e-40 168.7 445 33.3
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 8.4e-40 168.7 410 36.8
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 1.4e-39 167.9 426 34.0
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 1.4e-39 167.9 426 32.4
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 1.4e-39 167.9 454 32.8
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 1.9e-39 167.5 594 30.0
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 1.9e-39 167.5 475 33.5
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 2.5e-39 167.2 254 43.7
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 3.2e-39 166.8 394 35.8
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 3.2e-39 166.8 414 35.3
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 7.1e-39 165.6 488 31.8
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 2.1e-38 164.1 229 44.5
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 7.9e-38 162.2 257 41.6
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 1.8e-37 161.0 257 41.2
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 3.9e-37 159.8 414 33.3
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 5.1e-37 159.5 407 35.1
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 1.9e-36 157.5 489 30.3
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 1.3e-35 154.8 162 51.9
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 3.7e-35 153.3 416 32.5
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 1.8e-34 151.0 253 39.1
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 4.1e-34 149.8 406 31.8
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 5.3e-34 149.4 412 31.1
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 5.3e-34 149.4 461 31.2
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 1.2e-33 148.3 433 32.3
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 7.6e-33 145.6 402 31.8
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 1.7e-32 144.4 399 31.6
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 1.7e-32 144.4 389 32.4
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 3.8e-32 143.3 422 30.8
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 8.5e-32 142.1 408 31.6
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 1.1e-31 141.7 258 38.8
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 1.1e-31 141.7 410 30.2
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 1.1e-31 141.7 154 52.6
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 1.4e-31 141.4 254 38.2
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 1.4e-31 141.4 254 38.2
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 5.5e-31 139.4 256 38.3
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 5.5e-31 139.4 219 41.6
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 5.5e-31 139.4 256 38.3
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 5.5e-31 139.4 256 38.3
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 9.3e-31 138.7 400 32.0
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 1.2e-30 138.3 373 33.2
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 1.2e-30 138.3 468 34.2
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 6.1e-30 136.0 161 49.1
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 6.1e-30 136.0 161 49.1
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 6.1e-30 136.0 161 49.1
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.9e-29 133.3 161 48.4
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 5.1e-29 132.9 374 33.2
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.9e-28 131.0 467 31.9
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 2.5e-28 130.6 300 34.7
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 4.3e-28 129.8 427 31.9
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 3.7e-27 126.7 290 39.3
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.5e-25 121.3 99 60.6
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.4e-23 114.8 260 31.5
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 2.5e-23 114.0 527 26.8
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 3.2e-23 113.6 261 32.6
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 2.1e-22 110.9 433 31.4
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 1.0e-21 108.6 154 44.8
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 1.1e-20 105.1 397 29.2
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 1.1e-20 105.1 349 30.9
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 3.3e-20 103.6 220 35.9
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.3e-20 103.6 220 35.9
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.7e-20 102.8 220 35.9
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 2.2e-19 100.9 120 45.8
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 2.2e-19 100.9 329 28.6
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.1e-18 96.7 220 35.0
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.3e-16 91.7 303 31.4
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 3.2e-15 87.0 291 28.5
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.2e-15 86.7 98 50.0
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 6.7e-13 79.3 84 48.8
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 3.3e-12 77.0 301 27.6
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.7e-11 73.6 120 40.0
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 3.7e-11 73.6 67 58.2
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 3.7e-11 73.6 64 56.2
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 4.8e-11 73.2 124 40.3
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 3.1e-10 70.5 168 33.3
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.9e-07 61.2 319 24.1


User provided reference genes

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