Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 1.7e-67 259.2 133 100.0
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 7.2e-58 227.3 133 89.5
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 2.3e-56 222.2 133 88.0
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 1.7e-51 206.1 133 80.5
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 2.9e-51 205.3 127 78.0
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 4.2e-50 201.4 133 79.7
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 4.2e-50 201.4 133 79.7
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 1.4e-45 186.4 133 75.9
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 3.1e-45 185.3 133 69.2
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 7.7e-44 180.6 133 66.9
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 5.5e-42 174.5 134 64.9
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 7.2e-42 174.1 134 65.7
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 2.1e-41 172.6 134 64.9
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 3.6e-41 171.8 133 64.7
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 1.8e-40 169.5 133 66.2
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 3.9e-40 168.3 133 63.9
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 3.9e-40 168.3 133 64.7
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 5.2e-40 167.9 133 63.2
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 6.7e-40 167.5 133 61.7
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 1.1e-39 166.8 134 62.7
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 1.1e-39 166.8 134 64.9
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 1.5e-39 166.4 133 63.9
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 1.5e-39 166.4 132 61.4
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 2.6e-39 165.6 133 60.9
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 3.3e-39 165.2 133 63.9
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 3.3e-39 165.2 133 63.2
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 3.3e-39 165.2 133 62.4
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 7.4e-39 164.1 133 63.2
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 7.4e-39 164.1 133 60.9
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 9.7e-39 163.7 133 62.4
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 1.7e-38 162.9 133 60.2
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 2.8e-38 162.2 134 63.4
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 2.8e-38 162.2 134 62.7
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 2.8e-38 162.2 133 63.9
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 4.8e-38 161.4 133 60.2
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 4.8e-38 161.4 133 60.9
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 6.3e-38 161.0 133 59.4
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 6.3e-38 161.0 134 60.4
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 1.1e-37 160.2 134 61.9
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.1e-37 160.2 133 63.9
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 1.1e-37 160.2 134 63.4
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 1.4e-37 159.8 118 67.8
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 1.4e-37 159.8 133 60.2
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 1.8e-37 159.5 137 61.3
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 2.4e-37 159.1 133 59.4
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 2.4e-37 159.1 133 63.2
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 3.1e-37 158.7 134 58.2
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 4.1e-37 158.3 133 59.4
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 4.1e-37 158.3 133 62.4
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 5.3e-37 157.9 133 62.4
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 5.3e-37 157.9 133 58.6
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 5.3e-37 157.9 133 62.4
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 7.0e-37 157.5 133 58.6
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 9.1e-37 157.1 133 60.9
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 9.1e-37 157.1 133 59.4
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 9.1e-37 157.1 133 60.2
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 9.1e-37 157.1 133 60.2
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 9.1e-37 157.1 133 59.4
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 1.2e-36 156.8 133 59.4
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 1.2e-36 156.8 133 56.4
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 1.6e-36 156.4 133 60.2
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 2.0e-36 156.0 133 60.2
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 2.0e-36 156.0 128 64.8
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 3.5e-36 155.2 133 57.9
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 7.7e-36 154.1 124 63.7
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 1.0e-35 153.7 135 60.0
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 1.3e-35 153.3 134 57.5
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 1.3e-35 153.3 134 59.7
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 1.7e-35 152.9 133 58.6
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 1.7e-35 152.9 133 60.2
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 2.9e-35 152.1 132 56.8
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 3.8e-35 151.8 116 64.7
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 5.0e-35 151.4 133 60.2
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 8.5e-35 150.6 137 56.9
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 8.5e-35 150.6 137 56.9
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 1.1e-34 150.2 133 57.9
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 1.1e-34 150.2 134 56.7
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.1e-34 150.2 107 69.2
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 1.1e-34 150.2 128 62.5
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 1.5e-34 149.8 135 58.5
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 1.5e-34 149.8 116 65.5
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 1.9e-34 149.4 110 68.2
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 1.9e-34 149.4 133 57.1
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 7.2e-34 147.5 134 59.0
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 7.2e-34 147.5 133 59.4
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 9.4e-34 147.1 137 56.2
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 9.4e-34 147.1 137 56.2
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 1.2e-33 146.7 137 56.2
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.2e-33 146.7 137 56.2
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.2e-33 146.7 137 56.2
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.2e-33 146.7 137 56.2
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.6e-33 146.4 119 64.7
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.1e-33 146.0 137 56.2
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 3.6e-33 145.2 133 56.4
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 6.1e-33 144.4 137 56.9
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 8.0e-33 144.1 119 62.2
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.4e-32 143.3 137 56.9
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 1.4e-32 143.3 103 68.0
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 1.8e-32 142.9 133 55.6
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 1.8e-32 142.9 133 55.6
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 2.3e-32 142.5 100 69.0
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 3.0e-32 142.1 110 64.5
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 4.0e-32 141.7 133 53.4
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 5.2e-32 141.4 92 72.8
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 5.2e-32 141.4 92 75.0
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 6.8e-32 141.0 119 59.7
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 1.2e-31 140.2 109 64.2
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 1.2e-31 140.2 109 64.2
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 1.2e-31 140.2 109 64.2
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 1.2e-31 140.2 109 64.2
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.2e-31 140.2 112 66.1
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 2.0e-31 139.4 124 57.3
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 5.7e-31 137.9 92 72.8
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 7.5e-31 137.5 120 56.7
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 2.8e-30 135.6 114 59.6
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 8.3e-30 134.0 140 51.4
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 8.3e-30 134.0 133 53.4
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 1.4e-29 133.3 92 69.6
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 1.4e-29 133.3 133 48.9
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 3.1e-29 132.1 101 66.3
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 4.1e-29 131.7 108 60.2
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 8.5e-27 124.0 119 52.9
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.1e-26 123.6 125 50.4
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 2.3e-24 115.9 103 57.3
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 6.8e-24 114.4 100 61.0
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 1.5e-23 113.2 118 50.8
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 3.7e-22 108.6 92 60.9
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 1.5e-18 96.7 99 46.5
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 1.2e-17 93.6 92 50.0
FAN02G3728 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.6e-17 92.0 57 71.9
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 4.7e-17 91.7 83 51.8
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 6.8e-16 87.8 90 47.8
SMO164G0004 Selaginella moellendorffii HOM05D005499 ORTHO05D006666 1.5e-15 86.7 103 43.7
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.1e-13 80.5 52 69.2
TAR374G0914 Trochodendron aralioides HOM05D005499 ORTHO05D006666 2.3e-11 72.8 62 58.1
Dinv24762 Davidia involucrata HOM05D003270 ORTHO05D003662 5.6e-10 68.2 69 53.6
Cre12.g546000 Chlamydomonas reinhardtii HOM05D005499 ORTHO05D006666 9.5e-10 67.4 105 38.1
MCO16G647 Micromonas commoda HOM05D005499 ORTHO05D006666 1.4e-08 63.5 119 37.8
CAN.G787.10 Capsicum annuum HOM05D005210 ORTHO05D010080 8.9e-08 60.8 53 62.3
Actinidia36173 Actinidia chinensis HOM05D005499 ORTHO05D006666 2.6e-07 59.3 81 46.9
Dinv25304 Davidia involucrata HOM05D000009 ORTHO05D000008 3.7e-06 55.5 115 36.5
PRCOL_00001894 Prasinoderma coloniale HOM05D005499 ORTHO05D006666 6.4e-06 54.7 66 40.9


User provided reference genes

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