Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.4e-195 684.9 362 100.0
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.2e-171 606.7 362 89.8
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 1.4e-164 583.2 362 85.4
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 2.6e-163 578.9 362 83.7
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 3.9e-159 565.1 362 83.7
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 1.2e-147 526.9 364 81.3
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 2.7e-107 392.9 381 59.6
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.9e-106 389.0 381 59.8
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 8.1e-96 354.8 380 56.3
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 9.0e-95 351.3 363 56.5
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 1.5e-94 350.5 370 54.6
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 8.4e-93 344.7 375 52.8
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.1e-91 340.1 370 52.4
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 2.1e-91 340.1 370 54.3
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 7.8e-91 338.2 376 53.2
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.0e-90 337.8 366 52.7
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.0e-90 336.3 370 52.2
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 3.9e-90 335.9 384 52.3
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 6.6e-90 335.1 372 53.2
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 6.6e-90 335.1 372 53.2
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 1.1e-89 334.3 376 52.4
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 1.5e-89 334.0 366 52.2
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.5e-89 333.2 370 51.6
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 5.6e-89 332.0 382 51.3
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 5.6e-89 332.0 371 52.0
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 7.3e-89 331.6 372 51.6
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 7.3e-89 331.6 338 55.9
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 9.6e-89 331.3 370 53.8
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 4.8e-88 328.9 367 54.0
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 6.2e-88 328.6 369 53.9
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 8.1e-88 328.2 331 57.4
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 1.1e-87 327.8 373 50.7
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 5.3e-87 325.5 370 51.9
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.5e-86 323.9 372 51.3
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 1.5e-86 323.9 381 49.9
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 5.8e-86 322.0 362 51.7
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 7.6e-86 321.6 359 52.1
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 1.3e-85 320.9 374 50.8
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 2.9e-85 319.7 373 51.7
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 3.8e-85 319.3 374 52.1
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 6.4e-85 318.5 372 50.5
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 6.4e-85 318.5 367 51.8
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 8.4e-85 318.2 344 52.0
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 2.4e-84 316.6 374 50.8
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 3.2e-84 316.2 375 49.6
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 3.2e-84 316.2 374 50.5
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 9.3e-84 314.7 407 48.2
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.6e-83 313.9 375 50.7
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.7e-83 313.2 372 50.0
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.0e-82 311.2 371 48.5
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 1.0e-82 311.2 385 48.3
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.8e-82 310.5 374 49.5
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 1.8e-82 310.5 351 52.7
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 3.9e-82 309.3 367 50.4
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 7.4e-81 305.1 373 49.6
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 2.8e-80 303.1 370 49.7
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 2.8e-80 303.1 373 48.8
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 1.8e-79 300.4 370 48.6
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 6.9e-79 298.5 357 49.3
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 9.0e-79 298.1 370 48.9
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.5e-78 297.4 370 49.2
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 2.0e-78 297.0 372 47.8
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 2.0e-78 297.0 325 55.1
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 2.6e-78 296.6 374 47.9
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 5.8e-78 295.4 309 54.7
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 9.9e-78 294.7 364 49.7
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 1.3e-77 294.3 329 55.3
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 2.2e-77 293.5 373 50.7
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 3.8e-77 292.7 368 46.7
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 3.8e-77 292.7 369 48.0
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 4.9e-77 292.4 370 47.6
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 6.4e-77 292.0 378 49.2
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 3.2e-76 289.7 355 50.1
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 4.2e-76 289.3 365 48.5
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 1.6e-75 287.3 371 47.4
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.6e-75 287.3 328 51.8
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 2.1e-75 287.0 371 47.4
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 4.6e-75 285.8 379 49.1
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 5.1e-74 282.3 305 55.1
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 6.7e-74 282.0 358 48.6
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 8.7e-74 281.6 371 45.0
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 3.3e-73 279.6 379 45.9
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 4.3e-73 279.3 379 48.8
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 1.6e-72 277.3 388 45.4
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 2.1e-72 276.9 373 48.8
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 6.2e-72 275.4 373 45.6
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 5.3e-71 272.3 370 47.8
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.2e-70 271.2 354 46.9
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 2.0e-70 270.4 372 42.7
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 5.8e-70 268.9 372 42.7
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 7.6e-70 268.5 370 45.7
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 1.3e-69 267.7 372 43.3
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 1.7e-69 267.3 373 45.3
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 6.5e-69 265.4 376 44.1
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 1.1e-68 264.6 373 45.0
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 1.1e-68 264.6 374 43.9
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.4e-68 264.2 374 43.9
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.4e-68 264.2 374 43.9
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.4e-68 264.2 371 41.5
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 5.5e-68 262.3 369 45.8
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 2.7e-67 260.0 352 44.6
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 3.5e-67 259.6 371 43.9
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 4.6e-67 259.2 374 42.2
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 1.0e-66 258.1 369 43.1
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 1.8e-66 257.3 369 42.8
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 3.9e-66 256.1 372 43.0
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 3.9e-66 256.1 369 43.1
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 3.9e-66 256.1 368 45.1
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 1.1e-65 254.6 368 42.9
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 1.1e-65 254.6 368 42.9
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 1.5e-65 254.2 369 42.5
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 1.9e-65 253.8 329 48.3
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 4.3e-65 252.7 346 46.0
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 7.4e-65 251.9 369 42.5
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 6.3e-64 248.8 376 42.8
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 5.3e-63 245.7 372 42.5
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 1.2e-62 244.6 339 44.2
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 1.2e-62 244.6 372 42.5
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 1.2e-62 244.6 372 42.5
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 3.6e-59 233.0 372 41.7
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 3.0e-58 229.9 333 46.5
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.5e-57 227.6 370 41.4
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 9.7e-57 224.9 325 42.2
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.5e-54 217.6 349 41.5
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 1.2e-51 208.0 381 39.1
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 5.1e-50 202.6 279 46.2
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 2.6e-46 190.3 334 39.5
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 1.0e-45 188.3 279 41.6
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 1.3e-40 171.4 199 49.2
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.8e-39 167.5 282 40.8
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 2.7e-35 153.7 129 61.2
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.5e-33 147.9 135 59.3
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 5.7e-33 146.0 129 58.9
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 4.8e-32 142.9 227 40.5
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 2.9e-29 133.7 382 34.0
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 4.7e-27 126.3 369 32.8
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 1.4e-23 114.8 75 77.3
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.6e-22 111.3 157 41.4
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 4.2e-20 103.2 209 34.9
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 4.2e-20 103.2 254 33.5
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 7.2e-20 102.4 249 34.5
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.0e-18 97.1 141 40.4
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 8.9e-18 95.5 143 38.5
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 1.5e-17 94.7 376 29.5
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 7.5e-17 92.4 377 26.8
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.1e-15 88.6 379 27.2
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.8e-15 87.8 135 39.3
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.4e-15 87.4 116 41.4
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 9.5e-12 75.5 114 44.7
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 4.0e-10 70.1 105 38.1
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 9.8e-09 65.5 95 46.3
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 3.2e-07 60.5 82 48.8
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 3.2e-07 60.5 60 55.0
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 3.2e-07 60.5 63 54.0
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 6.0e-06 56.2 80 46.2


User provided reference genes

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