Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 7.5e-222 774.2 635 100.0
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 3.3e-209 732.3 635 97.2
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 2.4e-172 609.8 635 89.0
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 7.9e-171 604.7 635 88.3
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 1.0e-170 604.4 635 88.2
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 1.8e-170 603.6 636 88.2
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 1.8e-170 603.6 636 88.2
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 2.6e-166 589.7 635 87.1
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 2.3e-130 470.3 634 79.0
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 6.8e-114 415.6 636 73.1
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 8.6e-109 398.7 640 73.4
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 2.1e-107 394.0 622 73.6
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 2.1e-99 367.5 623 71.9
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 8.0e-99 365.5 626 72.4
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 1.1e-98 365.2 618 71.2
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 2.6e-97 360.5 632 71.0
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 2.2e-96 357.5 624 71.8
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 7.8e-94 349.0 625 70.9
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.0e-93 348.6 607 71.2
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 1.7e-93 347.8 624 70.5
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 5.1e-93 346.3 629 70.7
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 2.1e-91 340.9 621 70.4
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.8e-90 337.8 627 71.3
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 3.1e-90 337.0 624 70.4
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 6.8e-90 335.9 648 68.2
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 8.9e-90 335.5 648 68.2
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 7.5e-89 332.4 635 69.3
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 9.9e-89 332.0 630 70.5
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 6.4e-88 329.3 630 69.4
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 8.3e-88 328.9 625 69.1
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.1e-87 328.6 625 71.2
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 1.9e-87 327.8 638 68.7
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 2.4e-87 327.4 624 69.9
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 2.4e-87 327.4 635 69.8
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 4.1e-87 326.6 628 70.2
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 9.2e-87 325.5 626 70.6
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.1e-86 324.3 626 70.0
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 2.3e-85 320.9 635 69.4
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 2.3e-85 320.9 622 70.4
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 3.0e-85 320.5 624 69.4
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 5.1e-85 319.7 628 69.3
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 6.6e-85 319.3 623 70.0
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.1e-84 318.5 623 70.0
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 1.5e-84 318.2 635 69.8
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 2.5e-84 317.4 624 69.6
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 4.3e-84 316.6 629 70.0
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.6e-83 314.7 636 68.4
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 2.4e-82 310.8 630 68.6
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 4.0e-82 310.1 626 69.2
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 4.0e-82 310.1 626 69.8
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 8.9e-82 308.9 626 70.4
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 2.6e-81 307.4 628 69.1
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 4.4e-81 306.6 631 68.1
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 1.3e-80 305.1 630 68.4
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 2.2e-80 304.3 630 67.9
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 1.4e-79 301.6 634 68.1
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 1.9e-79 301.2 624 68.4
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 2.7e-78 297.4 624 68.3
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 3.5e-78 297.0 632 67.2
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 7.8e-78 295.8 623 69.3
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 7.8e-78 295.8 623 69.3
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 1.0e-77 295.4 624 67.6
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 3.0e-77 293.9 646 64.1
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 3.0e-77 293.9 622 67.8
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 6.6e-77 292.7 619 68.7
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 6.6e-77 292.7 628 68.9
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.5e-76 291.6 582 71.5
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 3.3e-76 290.4 636 66.7
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 5.6e-76 289.7 635 67.7
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 7.3e-76 289.3 630 68.1
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.2e-75 288.5 631 66.7
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 3.6e-75 287.0 632 68.0
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 4.7e-75 286.6 624 67.1
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 4.7e-75 286.6 624 66.7
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 6.2e-75 286.2 622 66.6
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 4.0e-74 283.5 633 68.9
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 6.9e-74 282.7 624 67.5
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 4.4e-73 280.0 633 66.2
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 1.7e-72 278.1 634 66.9
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 2.9e-72 277.3 623 66.5
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 4.9e-72 276.6 635 67.7
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.1e-71 275.4 624 67.0
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 2.7e-70 270.8 236 60.2
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 1.3e-69 268.5 591 70.4
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 6.6e-69 266.2 629 67.7
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 4.3e-68 263.5 632 67.9
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 8.1e-67 259.2 621 67.0
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 3.1e-66 257.3 626 62.3
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.7e-64 251.5 628 54.5
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 2.5e-60 237.7 624 64.7
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 1.6e-59 235.0 629 64.9
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 1.6e-59 235.0 628 64.3
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 1.7e-56 224.9 625 63.7
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 7.1e-55 219.5 627 63.8
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 2.7e-54 217.6 629 63.4
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 4.6e-54 216.9 628 62.9
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 1.3e-53 215.3 631 62.0
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 3.3e-52 210.7 620 63.9
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 1.6e-51 208.4 246 50.4
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 6.2e-51 206.5 632 62.7
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 6.9e-50 203.0 632 62.3
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 2.6e-49 201.1 620 43.5
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 8.4e-48 196.1 626 61.3
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 1.4e-47 195.3 593 63.6
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 4.2e-47 193.7 243 50.2
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 1.3e-43 182.2 232 48.3
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 5.0e-40 170.2 637 60.4
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 1.1e-39 169.1 231 71.4
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 2.5e-39 167.9 637 60.4
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 4.6e-38 163.7 640 58.9
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 6.1e-38 163.3 636 59.4
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.4e-37 162.2 627 61.4
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 1.4e-37 162.2 446 78.5
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 3.3e-36 157.5 632 58.7
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 1.2e-33 149.1 632 59.8
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 2.9e-32 144.4 646 58.0
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 5.0e-32 143.7 642 58.4
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 1.4e-31 142.1 619 59.9
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 1.4e-31 142.1 619 59.9
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 2.5e-31 141.4 638 59.1
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 9.4e-31 139.4 637 58.4
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 6.1e-30 136.7 617 59.5
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.0e-29 136.0 630 60.0
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 1.4e-29 135.6 639 58.2
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 1.8e-29 135.2 604 60.6
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 3.0e-29 134.4 239 41.4
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 5.1e-29 133.7 633 58.9
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.5e-28 132.1 626 57.3
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 1.5e-28 132.1 241 37.8
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 2.0e-28 131.7 631 57.1
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 1.7e-27 128.6 620 59.5
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 3.7e-27 127.5 620 59.5
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 6.3e-27 126.7 638 58.5
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 3.1e-26 124.4 504 54.0
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 9.1e-26 122.9 626 56.1
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 1.5e-25 122.1 628 56.5
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 1.0e-24 119.4 227 38.8
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 1.7e-24 118.6 496 50.2
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.9e-23 115.2 641 56.6
Hma1.2p1_0217F.1_g091700 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.6e-22 112.1 102 60.8
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 3.3e-20 104.4 603 56.2
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 2.8e-19 101.3 616 56.8
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 2.4e-18 98.2 245 35.9
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 4.1e-18 97.4 237 35.4
Hma1.2p1_0217F.1_g091695 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.2e-17 95.9 90 60.0
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 2.0e-17 95.1 673 53.9
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 2.6e-17 94.7 623 46.7
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 3.5e-17 94.4 630 56.7
Hma1.2p1_0217F.1_g091710 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 3.5e-17 94.4 90 58.9
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 7.7e-17 93.2 241 34.0
Hma1.2p1_0217F.1_g091720 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.0e-16 92.8 143 41.3
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.7e-16 92.0 630 55.4
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 2.2e-16 91.7 630 56.5
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 5.0e-16 90.5 213 34.7
Hma1.2p1_0217F.1_g091680 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 8.5e-16 89.7 86 58.1
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 1.2e-14 85.9 213 33.3
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 1.2e-14 85.9 105 48.6
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 1.6e-14 85.5 200 35.5
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 2.1e-14 85.1 151 39.7
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 3.6e-14 84.3 219 33.8
Haze_09990 Corylus avellana HOM05D003963 ORTHO05D004558 2.3e-13 81.6 49 75.5
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 2.2e-11 75.1 178 32.6
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 3.1e-10 71.2 235 31.5
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 4.1e-10 70.9 602 43.9
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 4.1e-10 70.9 602 43.9
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 2.0e-09 68.6 238 29.8
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 2.7e-09 68.2 237 30.8
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 1.0e-08 66.2 151 36.4
Haze_27105 Corylus avellana HOM05D003963 ORTHO05D004558 8.5e-08 63.2 68 55.9
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 8.5e-08 63.2 223 27.8
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 1.1e-07 62.8 238 28.6
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 1.1e-07 62.8 187 28.9
Os06g0523100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 2.5e-07 61.6 139 35.3
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 5.5e-07 60.5 202 30.2
MBI05_g29099_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 1.2e-06 59.3 111 36.9
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 2.1e-06 58.5 107 37.4
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 2.1e-06 58.5 151 31.1
SEGI_29670 Sequoiadendron giganteum HOM05D003963 ORTHO05D004558 2.7e-06 58.2 115 40.0
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 4.7e-06 57.4 107 36.4
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 8.0e-06 56.6 267 27.7
SMO115G0264 Selaginella moellendorffii HOM05D003963 ORTHO05D004558 8.0e-06 56.6 166 29.5
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 8.0e-06 56.6 158 31.0


User provided reference genes

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