Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003748g0010 Nicotiana tabacum HOM05D001691 ORTHO05D286861 6.7e-48 193.7 102 100.0
Nitab4.5_0008610g0030 Nicotiana tabacum HOM05D001691 ORTHO05D282225 3.4e-15 85.1 84 61.9
Solyc06g065500.4 Solanum lycopersicum HOM05D001691 ORTHO05D001704 7.0e-13 77.4 72 56.9
PGSC0003DMG400026122 Solanum tuberosum HOM05D001691 ORTHO05D001704 7.0e-13 77.4 72 56.9
Sopen06g023990 Solanum pennellii HOM05D001691 ORTHO05D001704 1.6e-12 76.3 72 55.6
CAN.G199.27 Capsicum annuum HOM05D001691 ORTHO05D001704 3.5e-12 75.1 73 53.4
Gohir.A10G195600 Gossypium hirsutum HOM05D001691 ORTHO05D001704 3.5e-12 75.1 72 56.9
Gohir.D10G202500 Gossypium hirsutum HOM05D001691 ORTHO05D001704 3.5e-12 75.1 72 56.9
Gorai.011G227200 Gossypium raimondii HOM05D001691 ORTHO05D001704 3.5e-12 75.1 72 56.9
CANSAT11G1708 Cannabis sativa HOM05D001691 ORTHO05D001704 6.0e-12 74.3 74 55.4
Potri.017G144900 Populus trichocarpa HOM05D001691 ORTHO05D001704 1.0e-11 73.6 68 55.9
QL07p014078 Quercus lobata HOM05D001691 ORTHO05D001704 1.0e-11 73.6 67 55.2
Migut.F02111 Erythranthe guttata HOM05D001691 ORTHO05D001704 1.3e-11 73.2 75 49.3
Manes.02G138600 Manihot esculenta HOM05D001691 ORTHO05D001704 1.3e-11 73.2 68 54.4
MSTRG.27399 Avicennia marina HOM05D001691 ORTHO05D001704 1.7e-11 72.8 75 49.3
CiPaw.01G106800 Carya illinoinensis HOM05D001691 ORTHO05D001704 2.3e-11 72.4 72 50.0
Haze_19116 Corylus avellana HOM05D001691 ORTHO05D001704 2.3e-11 72.4 67 55.2
Haze_19120 Corylus avellana HOM05D001691 ORTHO05D001704 2.3e-11 72.4 67 55.2
Peaxi162Scf00152g01231 Petunia axillaris HOM05D001691 ORTHO05D001704 2.3e-11 72.4 68 55.9
Eucgr.H00022 Eucalyptus grandis HOM05D001691 ORTHO05D001704 3.9e-11 71.6 72 52.8
Sabra15G0083100 Salix brachista HOM05D001691 ORTHO05D001704 3.9e-11 71.6 67 56.7
Cfa020776 Carpinus fangiana HOM05D001691 ORTHO05D001704 6.6e-11 70.9 67 53.7
Sabra04G0048900 Salix brachista HOM05D001691 ORTHO05D001704 8.6e-11 70.5 68 52.9
SalBow1G6097 Salvia bowleyana HOM05D001691 ORTHO05D001704 8.6e-11 70.5 75 49.3
Actinidia28073 Actinidia chinensis HOM05D001691 ORTHO05D001704 1.1e-10 70.1 75 50.7
Duzib106G1573 Durio zibethinus HOM05D001691 ORTHO05D001704 1.1e-10 70.1 72 51.4
Thecc.04G023600 Theobroma cacao HOM05D001691 ORTHO05D001704 1.1e-10 70.1 68 52.9
Potri.004G074100 Populus trichocarpa HOM05D001691 ORTHO05D001704 1.5e-10 69.7 68 51.5
CiPaw.02G057700 Carya illinoinensis HOM05D001691 ORTHO05D001704 2.5e-10 68.9 67 50.7
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 2.5e-10 68.9 75 50.7
Nitab4.5_0010488g0010 Nicotiana tabacum HOM05D001691 ORTHO05D001704 2.5e-10 68.9 68 52.9
vmacro19909 Vaccinium macrocarpon HOM05D001691 ORTHO05D001704 2.5e-10 68.9 75 45.3
A05p13000 Brassica napus HOM05D001691 ORTHO05D001704 3.3e-10 68.6 66 56.1
C04p17410 Brassica napus HOM05D001691 ORTHO05D001704 3.3e-10 68.6 66 56.1
BolC4t23291H Brassica oleracea HOM05D001691 ORTHO05D001704 3.3e-10 68.6 66 56.1
BraA05t20240Z Brassica rapa HOM05D001691 ORTHO05D001704 3.3e-10 68.6 66 56.1
CSS0049892 Camellia sinensis var. sinensis HOM05D001691 ORTHO05D001704 3.3e-10 68.6 75 48.0
Ciclev10031025m.g Citrus clementina HOM05D001691 ORTHO05D001704 3.3e-10 68.6 72 51.4
FvH4_4g29971 Fragaria vesca HOM05D001691 ORTHO05D001704 3.3e-10 68.6 71 54.9
FAN17G0506 Fragaria x ananassa HOM05D001691 ORTHO05D001704 3.3e-10 68.6 71 54.9
Lj5A243T102 Lonicera japonica HOM05D001691 ORTHO05D001704 3.3e-10 68.6 75 46.7
PGR042G2492 Punica granatum HOM05D001691 ORTHO05D001704 5.6e-10 67.8 67 53.7
AT2G32230 Arabidopsis thaliana HOM05D001691 ORTHO05D001704 7.3e-10 67.4 66 54.5
BcaB02g10482 Brassica carinata HOM05D001691 ORTHO05D001704 7.3e-10 67.4 71 52.1
CARHR125990 Cardamine hirsuta HOM05D001691 ORTHO05D001704 7.3e-10 67.4 66 53.0
FAN22G0879 Fragaria x ananassa HOM05D001691 ORTHO05D002350 7.3e-10 67.4 71 53.5
Carub.0004s1354 Capsella rubella HOM05D001691 ORTHO05D001704 1.2e-09 66.6 66 53.0
RcHm_v2.0_Chr4g0438251 Rosa chinensis HOM05D001691 ORTHO05D001704 1.2e-09 66.6 66 54.5
Sp4g14590 Schrenkiella parvula HOM05D001691 ORTHO05D001704 1.2e-09 66.6 66 53.0
Atru.chr2.3501 Acer truncatum HOM05D001691 ORTHO05D001704 1.6e-09 66.2 68 52.9
Thhalv10016443m.g Eutrema salsugineum HOM05D001691 ORTHO05D001704 1.6e-09 66.2 66 53.0
Rhsim05G0111600 Rhododendron simsii HOM05D001691 ORTHO05D001704 1.6e-09 66.2 75 45.3
Rhsim08G0076600 Rhododendron simsii HOM05D001691 ORTHO05D001704 1.6e-09 66.2 75 45.3
AL4G27590 Arabidopsis lyrata HOM05D001691 ORTHO05D001704 2.1e-09 65.9 66 54.5
PSO528G0159 Papaver somniferum HOM05D001691 ORTHO05D001704 2.1e-09 65.9 69 47.8
Cpa.g.sc36.22 Carica papaya HOM05D001691 ORTHO05D001704 2.8e-09 65.5 71 49.3
TPR.G37147 Trifolium pratense HOM05D001691 ORTHO05D001704 2.8e-09 65.5 66 53.0
VMungo0647G2021 Vigna mungo HOM05D001691 ORTHO05D001704 2.8e-09 65.5 75 46.7
PSO170G6642 Papaver somniferum HOM05D001691 ORTHO05D001704 4.7e-09 64.7 69 46.4
Rhsim05G0111800 Rhododendron simsii HOM05D001691 ORTHO05D001704 4.7e-09 64.7 75 44.0
arahy.Tifrunner.gnm1.ann1.2HQ2B3 Arachis hypogaea HOM05D001691 ORTHO05D001704 6.2e-09 64.3 74 44.6
DCAR_001806 Daucus carota HOM05D001691 ORTHO05D001704 6.2e-09 64.3 75 44.0
Glyma.17G240000 Glycine max HOM05D001691 ORTHO05D001704 6.2e-09 64.3 75 45.3
PGR142G0568 Punica granatum HOM05D001691 ORTHO05D001704 6.2e-09 64.3 76 48.7
Aa31LG5G4310 Aethionema arabicum HOM05D001691 ORTHO05D001704 8.0e-09 63.9 66 50.0
Glyma.14G084800 Glycine max HOM05D001691 ORTHO05D001704 8.0e-09 63.9 75 45.3
SGA_v2.0_scaffold243G44279 Striga asiatica HOM05D001691 ORTHO05D001704 8.0e-09 63.9 75 44.0
SGA_v2.0_scaffold88G27195 Striga asiatica HOM05D001691 ORTHO05D001704 8.0e-09 63.9 75 44.0
THA.LOC104800971 Tarenaya hassleriana HOM05D001691 ORTHO05D001704 8.0e-09 63.9 66 47.0
Lj3g0007883 Lotus japonicus HOM05D001691 ORTHO05D001704 1.1e-08 63.5 75 45.3
Nn5g28485 Nelumbo nucifera HOM05D001691 ORTHO05D001704 1.1e-08 63.5 75 44.0
Prupe.1G287700 Prunus persica HOM05D001691 ORTHO05D001704 1.1e-08 63.5 72 47.2
Oeu050907.1 Olea europaea HOM05D001691 ORTHO05D001704 1.8e-08 62.8 73 46.6
Sc19g0003220 Simmondsia chinensis HOM05D001691 ORTHO05D001704 1.8e-08 62.8 67 49.3
Phvul.001G023800 Phaseolus vulgaris HOM05D001691 ORTHO05D001704 3.1e-08 62.0 75 44.0
PGR142G3444 Punica granatum HOM05D001691 ORTHO05D001704 3.1e-08 62.0 75 48.0
TAR376G0830 Trochodendron aralioides HOM05D001691 ORTHO05D001704 3.1e-08 62.0 72 47.2
TWI23G1053 Tripterygium wilfordii HOM05D001691 ORTHO05D001704 4.0e-08 61.6 71 49.3
FvH4_1g04370 Fragaria vesca HOM05D001691 ORTHO05D001704 6.8e-08 60.8 71 47.9
Lj4g0020920 Lotus japonicus HOM05D001691 ORTHO05D001704 6.8e-08 60.8 68 48.5
arahy.Tifrunner.gnm1.ann1.JT30L6 Arachis hypogaea HOM05D001691 ORTHO05D001704 8.9e-08 60.5 74 41.9
CDE06G2292 Ceratophyllum demersum HOM05D001691 ORTHO05D001704 8.9e-08 60.5 73 47.9
Cc06_g09890 Coffea canephora HOM05D001691 ORTHO05D001704 8.9e-08 60.5 74 47.3
Lsat_1_v5_gn_5_103060 Lactuca sativa HOM05D001691 ORTHO05D001704 8.9e-08 60.5 74 47.3
Prupe.7G233500 Prunus persica HOM05D001691 ORTHO05D001704 8.9e-08 60.5 71 47.9
Eucgr.C01260 Eucalyptus grandis HOM05D001691 ORTHO05D001704 1.2e-07 60.1 66 51.5
MD16G1060600 Malus domestica HOM05D001691 ORTHO05D001704 1.2e-07 60.1 72 43.1
EL10Ac2g03520 Beta vulgaris HOM05D001691 ORTHO05D001704 1.5e-07 59.7 72 47.2
RcHm_v2.0_Chr2g0090021 Rosa chinensis HOM05D001691 ORTHO05D001704 1.5e-07 59.7 69 47.8
Ah.07g202400 Amaranthus hybridus HOM05D001691 ORTHO05D001704 2.0e-07 59.3 67 47.8
ClCG03G010870 Citrullus lanatus HOM05D001691 ORTHO05D001704 2.0e-07 59.3 71 47.9
Ciclev10007416m.g Citrus clementina HOM05D001691 ORTHO05D001704 2.0e-07 59.3 74 45.9
MELO3C010072.2 Cucumis melo HOM05D001691 ORTHO05D001704 2.0e-07 59.3 67 50.7
CsaV3_1G044620 Cucumis sativus L. HOM05D001691 ORTHO05D001704 2.0e-07 59.3 71 47.9
MD02G1043500 Malus domestica HOM05D001691 ORTHO05D001704 2.0e-07 59.3 71 46.5
Sed0014893 Sechium edule HOM05D001691 ORTHO05D001704 2.0e-07 59.3 71 47.9
Zm00001eb237440 Zea mays HOM05D001691 ORTHO05D001704 2.0e-07 59.3 66 45.5
CsaV3_1G024130 Cucumis sativus L. HOM05D001691 ORTHO05D001704 2.6e-07 58.9 70 47.1
Migut.F01867 Erythranthe guttata HOM05D001691 ORTHO05D001704 2.6e-07 58.9 73 42.5
Nn1g09667 Nelumbo nucifera HOM05D001691 ORTHO05D001704 2.6e-07 58.9 72 44.4
VMungo0251G3372 Vigna mungo HOM05D001691 ORTHO05D001704 2.6e-07 58.9 74 43.2
ClCG06G008730 Citrullus lanatus HOM05D001691 ORTHO05D001704 3.4e-07 58.5 70 45.7
HanXRQChr12g0355001 Helianthus annuus HOM05D001691 ORTHO05D001704 3.4e-07 58.5 74 44.6
ECA236G3159 Erigeron canadensis HOM05D001691 ORTHO05D001704 4.4e-07 58.2 68 50.0
HanXRQChr11g0337661 Helianthus annuus HOM05D001691 ORTHO05D001704 4.4e-07 58.2 68 48.5
MBI06_g43280_MAGBIO Magnolia biondii HOM05D001691 ORTHO05D001704 4.4e-07 58.2 67 46.3
GSVIVG01015365001 Vitis vinifera HOM05D001691 ORTHO05D001704 4.4e-07 58.2 72 45.8
Ca_01152_v3 Cicer arietinum L. HOM05D001691 ORTHO05D001704 5.8e-07 57.8 67 46.3
Lj7A653T51 Lonicera japonica HOM05D001691 ORTHO05D001704 5.8e-07 57.8 72 45.8
Lalb_Chr16g0388131 Lupinus albus HOM05D001691 ORTHO05D001704 7.5e-07 57.4 71 46.5
Sed0014904 Sechium edule HOM05D001691 ORTHO05D001704 7.5e-07 57.4 70 45.7
CiPaw.03G229500 Carya illinoinensis HOM05D001691 ORTHO05D001704 9.8e-07 57.0 71 47.9
Glyma.08G037600 Glycine max HOM05D001691 ORTHO05D001704 9.8e-07 57.0 66 45.5
TAR383G0106 Trochodendron aralioides HOM05D001691 ORTHO05D001704 9.8e-07 57.0 64 50.0
unitig_52.g17511 Utricularia gibba HOM05D001691 ORTHO05D001704 9.8e-07 57.0 77 39.0
ATR0800G162 Amborella trichopoda HOM05D001691 ORTHO05D001704 1.3e-06 56.6 74 48.6
AUR62025547 Chenopodium quinoa HOM05D001691 ORTHO05D001704 1.3e-06 56.6 67 47.8
Dinv36652 Davidia involucrata HOM05D001691 ORTHO05D001704 1.3e-06 56.6 64 50.0
Gorai.001G006100 Gossypium raimondii HOM05D001691 ORTHO05D001704 1.3e-06 56.6 71 47.9
Nn1g06330 Nelumbo nucifera HOM05D001691 ORTHO05D001704 1.3e-06 56.6 67 44.8
Nn3g18085 Nelumbo nucifera HOM05D001691 ORTHO05D001704 1.3e-06 56.6 72 43.1
TWI63G0488 Tripterygium wilfordii HOM05D001691 ORTHO05D001704 1.3e-06 56.6 69 44.9
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 1.7e-06 56.2 71 45.1
Phvul.002G312300 Phaseolus vulgaris HOM05D001691 ORTHO05D001704 1.7e-06 56.2 66 45.5
ECA234G3794 Erigeron canadensis HOM05D001691 ORTHO05D001704 2.2e-06 55.8 74 41.9
FAN28G1877 Fragaria x ananassa HOM05D001691 ORTHO05D001704 2.2e-06 55.8 72 47.2
Psat7g015320 Pisum sativum HOM05D001691 ORTHO05D001704 2.2e-06 55.8 74 43.2
Actinidia09429 Actinidia chinensis HOM05D001691 ORTHO05D001704 2.9e-06 55.5 66 48.5
CANSAT56G2883 Cannabis sativa HOM05D001691 ORTHO05D001704 2.9e-06 55.5 69 46.4
Medtr8g103380 Medicago truncatula HOM05D001691 ORTHO05D001704 2.9e-06 55.5 74 44.6
Psat1g005400 Pisum sativum HOM05D001691 ORTHO05D001704 2.9e-06 55.5 67 43.3
Sc08g0007620 Simmondsia chinensis HOM05D001691 ORTHO05D001704 2.9e-06 55.5 69 46.4
TPR.G23471 Trifolium pratense HOM05D001691 ORTHO05D001704 2.9e-06 55.5 74 44.6
QL02p045782 Quercus lobata HOM05D001691 ORTHO05D001704 3.7e-06 55.1 69 47.8
QL93p0337_0003 Quercus lobata HOM05D001691 ORTHO05D001704 3.7e-06 55.1 69 47.8
SEGI_15255 Sequoiadendron giganteum HOM05D001691 ORTHO05D001704 3.7e-06 55.1 70 41.4
SEGI_17838 Sequoiadendron giganteum HOM05D001691 ORTHO05D001704 3.7e-06 55.1 70 41.4
SEGI_26472 Sequoiadendron giganteum HOM05D001691 ORTHO05D001704 3.7e-06 55.1 70 41.4
Dinv42571 Davidia involucrata HOM05D001691 ORTHO05D001704 4.9e-06 54.7 75 45.3
Manes.03G022700 Manihot esculenta HOM05D001691 ORTHO05D001704 4.9e-06 54.7 69 44.9
Nitab4.5_0000097g0060 Nicotiana tabacum HOM05D001691 ORTHO05D001704 8.3e-06 53.9 64 45.3
Peaxi162Scf00231g00333 Petunia axillaris HOM05D001691 ORTHO05D001704 8.3e-06 53.9 65 49.2


User provided reference genes

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