Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.6e-211 739.2 389 100.0
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 7.6e-209 730.3 389 98.7
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 1.2e-177 626.7 400 81.5
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 4.5e-177 624.8 400 81.0
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 2.2e-171 605.9 400 79.0
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 1.5e-167 593.2 406 81.0
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 2.6e-156 555.8 390 76.9
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 3.3e-151 538.9 442 66.1
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.2e-150 537.0 369 73.7
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 1.4e-149 533.5 388 70.4
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 1.5e-148 530.0 395 70.6
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 9.8e-148 527.3 395 69.9
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 1.7e-147 526.6 388 69.1
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 2.8e-147 525.8 409 67.7
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 3.7e-147 525.4 389 69.2
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 3.7e-147 525.4 385 70.9
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 4.9e-147 525.0 397 69.0
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 8.3e-147 524.2 371 72.2
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 8.3e-147 524.2 402 68.9
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 4.1e-146 521.9 387 69.5
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 4.1e-146 521.9 380 70.0
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.6e-145 520.0 402 68.7
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 2.0e-145 519.6 389 69.2
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.0e-144 517.3 371 71.7
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 1.3e-144 516.9 390 71.3
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 1.3e-144 516.9 404 66.1
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.9e-144 515.8 384 68.5
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 5.0e-144 515.0 402 70.6
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 6.6e-144 514.6 395 67.8
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 8.6e-144 514.2 384 69.3
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.5e-143 513.5 399 66.4
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 7.3e-143 511.1 393 66.4
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 3.6e-142 508.8 387 67.2
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 1.8e-141 506.5 419 64.2
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 1.8e-141 506.5 424 64.2
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 8.9e-141 504.2 368 68.8
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 8.9e-141 504.2 378 69.0
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 1.2e-140 503.8 358 71.2
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 1.2e-140 503.8 386 68.7
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 2.0e-140 503.1 422 64.5
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 2.0e-140 503.1 407 67.6
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 2.6e-140 502.7 393 65.1
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 2.6e-140 502.7 378 68.5
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 3.4e-140 502.3 425 64.5
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 9.8e-140 500.7 378 68.5
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 2.2e-139 499.6 358 70.9
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 3.7e-139 498.8 393 66.2
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 2.4e-138 496.1 384 68.5
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 3.2e-138 495.7 387 66.4
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 5.4e-138 495.0 375 69.6
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 5.4e-138 495.0 401 64.3
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 2.0e-137 493.0 406 65.3
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 2.7e-137 492.7 292 82.2
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.7e-137 492.7 358 68.4
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 3.5e-137 492.3 368 68.8
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 4.6e-137 491.9 356 69.4
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 6.0e-137 491.5 292 79.8
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.3e-136 490.3 370 65.9
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 3.0e-136 489.2 384 66.7
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 3.9e-136 488.8 356 69.4
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 1.1e-135 487.3 287 80.8
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.1e-135 487.3 395 65.6
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 1.5e-135 486.9 439 60.4
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 1.5e-135 486.9 287 81.9
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 1.9e-135 486.5 403 63.5
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 3.3e-135 485.7 356 68.3
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 4.3e-135 485.3 287 81.9
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 7.3e-135 484.6 356 68.5
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 2.1e-134 483.0 358 69.6
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 6.2e-134 481.5 358 69.3
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 8.0e-134 481.1 359 68.5
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 8.0e-134 481.1 359 68.5
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 4.0e-133 478.8 390 63.3
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 8.9e-133 477.6 413 62.0
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 2.6e-132 476.1 373 66.0
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 3.4e-132 475.7 389 63.0
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 1.3e-131 473.8 385 64.7
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 8.3e-131 471.1 358 65.4
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 8.3e-131 471.1 371 66.3
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 1.1e-130 470.7 387 62.8
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 1.1e-130 470.7 386 64.8
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 9.2e-130 467.6 362 65.2
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 3.5e-129 465.7 380 62.4
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.1e-127 460.7 375 62.9
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 3.6e-126 455.7 380 62.4
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.1e-125 454.1 384 62.5
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 1.2e-124 450.7 361 62.0
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 1.5e-124 450.3 377 59.7
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 5.8e-124 448.4 384 59.4
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.9e-123 446.0 392 60.2
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 3.7e-123 445.7 392 60.5
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 1.9e-122 443.4 392 59.9
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 3.5e-121 439.1 395 60.5
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.3e-120 437.2 359 63.0
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.7e-120 436.8 390 60.3
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 3.0e-120 436.0 394 59.6
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 3.9e-120 435.6 287 74.9
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.5e-119 433.0 381 60.1
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.2e-118 430.6 357 63.3
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.6e-118 430.3 390 58.7
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.1e-117 427.6 387 59.2
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 1.4e-117 427.2 388 58.8
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 3.1e-117 426.0 388 58.8
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 1.2e-116 424.1 391 58.6
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.0e-116 423.3 359 62.7
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 2.6e-116 422.9 388 58.0
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 7.6e-116 421.4 391 58.6
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 9.9e-116 421.0 353 63.2
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 3.8e-115 419.1 392 58.4
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 3.8e-115 419.1 388 60.6
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 3.8e-115 419.1 352 62.5
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 1.4e-114 417.2 391 58.3
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.9e-114 416.8 389 58.9
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.4e-114 416.4 497 47.7
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 7.1e-114 414.8 359 60.7
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 2.7e-113 412.9 380 59.7
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 6.0e-113 411.8 362 56.1
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 7.8e-113 411.4 380 59.5
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.0e-112 411.0 384 59.6
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 1.7e-112 410.2 369 59.9
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 1.7e-112 410.2 378 57.7
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 3.0e-112 409.5 380 59.2
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 3.3e-111 406.0 364 60.4
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 6.2e-110 401.7 348 61.5
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 1.8e-109 400.2 379 58.0
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 2.4e-109 399.8 290 61.4
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 5.3e-109 398.7 387 57.4
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 5.3e-109 398.7 386 57.5
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 5.3e-109 398.7 386 57.5
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 5.3e-109 398.7 387 57.4
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 9.9e-108 394.4 386 57.0
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 3.2e-106 389.4 287 69.3
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 3.0e-104 382.9 294 68.0
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 7.3e-103 378.3 285 62.5
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 1.6e-102 377.1 358 59.2
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 2.1e-97 360.1 360 53.3
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 1.1e-95 354.4 405 48.6
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 8.4e-91 338.2 251 68.1
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 2.5e-74 283.5 161 83.9
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 1.1e-58 231.5 286 42.3
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 8.8e-56 221.9 171 66.7
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 3.3e-55 219.9 293 42.0
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 3.7e-54 216.5 160 68.1
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 6.5e-51 205.7 258 46.1
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 3.8e-43 179.9 248 44.4
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 1.4e-32 144.8 198 43.9
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 5.6e-26 122.9 72 73.6
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 1.6e-25 121.3 176 44.9
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.5e-23 114.8 104 58.7
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.6e-20 104.8 279 29.0
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 1.8e-16 91.3 142 41.5
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 4.9e-14 83.2 56 69.6
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 1.9e-10 71.2 123 39.0


User provided reference genes

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