Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003736g0070 Nicotiana tabacum HOM05D000687 ORTHO05D000515 6.9e-26 119.8 57 100.0
Nitab4.5_0004389g0040 Nicotiana tabacum HOM05D000687 ORTHO05D000515 6.9e-26 119.8 57 100.0
Nitab4.5_0008954g0010 Nicotiana tabacum HOM05D000687 ORTHO05D000515 2.0e-25 118.2 56 98.2
Nitab4.5_0003736g0050 Nicotiana tabacum HOM05D000687 ORTHO05D000515 4.6e-22 107.1 56 94.6
CAN.G575.6 Capsicum annuum HOM05D000687 ORTHO05D000515 1.3e-21 105.5 56 85.7
Peaxi162Scf00062g02214 Petunia axillaris HOM05D000001 ORTHO05D000003 6.7e-21 103.2 56 83.9
PGSC0003DMG400013494 Solanum tuberosum HOM05D000687 ORTHO05D000515 1.1e-20 102.4 56 83.9
Solyc05g013240.4 Solanum lycopersicum HOM05D000687 ORTHO05D000515 2.5e-20 101.3 56 82.1
Sopen05g007980 Solanum pennellii HOM05D000687 ORTHO05D000515 2.5e-20 101.3 56 82.1
TAR623G1277 Trochodendron aralioides HOM05D000687 ORTHO05D000515 8.2e-19 96.3 56 76.8
Rhsim01G0185300 Rhododendron simsii HOM05D000687 ORTHO05D000515 2.4e-18 94.7 56 76.8
Hma1.2p1_0843F.1_g227220 Hydrangea macrophylla HOM05D000687 ORTHO05D000515 3.1e-18 94.4 55 80.0
vmacro12613 Vaccinium macrocarpon HOM05D000687 ORTHO05D000515 1.5e-17 92.0 55 76.4
Nn7g35923 Nelumbo nucifera HOM05D000687 ORTHO05D000515 1.3e-16 89.0 55 76.4
Oeu040301.1 Olea europaea HOM05D000687 ORTHO05D000515 1.3e-16 89.0 56 71.4
Thecc.09G211300 Theobroma cacao HOM05D000687 ORTHO05D000515 1.3e-16 89.0 55 74.5
Prupe.6G009400 Prunus persica HOM05D000687 ORTHO05D000515 1.7e-16 88.6 55 74.5
Sc09g0000230 Simmondsia chinensis HOM05D000687 ORTHO05D000515 2.2e-16 88.2 56 69.6
TWI34G0696 Tripterygium wilfordii HOM05D000687 ORTHO05D000515 2.2e-16 88.2 56 67.9
EL10Ac4g10355 Beta vulgaris HOM05D000687 ORTHO05D000515 2.9e-16 87.8 56 64.3
COL.COLO4_35001 Corchorus olitorius HOM05D000687 ORTHO05D000515 2.9e-16 87.8 55 72.7
MD03G1007700 Malus domestica HOM05D000687 ORTHO05D000515 2.9e-16 87.8 55 74.5
SGA_v2.0_scaffold6G03280 Striga asiatica HOM05D000687 ORTHO05D000515 2.9e-16 87.8 56 71.4
Haze_22980 Corylus avellana HOM05D000687 ORTHO05D000515 3.8e-16 87.4 55 74.5
QL01p008041 Quercus lobata HOM05D000687 ORTHO05D000515 3.8e-16 87.4 55 72.7
MSTRG.18007 Avicennia marina HOM05D000687 ORTHO05D000515 8.5e-16 86.3 54 72.2
FvH4_3g44990 Fragaria vesca HOM05D000687 ORTHO05D000515 1.1e-15 85.9 55 69.1
FvH4_3g45000 Fragaria vesca HOM05D000687 ORTHO05D000515 1.1e-15 85.9 55 69.1
FAN11G1656 Fragaria x ananassa HOM05D000687 ORTHO05D000515 1.1e-15 85.9 55 69.1
FAN11G2123 Fragaria x ananassa HOM05D000687 ORTHO05D000515 1.1e-15 85.9 55 69.1
FAN25G0545 Fragaria x ananassa HOM05D000687 ORTHO05D000515 1.1e-15 85.9 55 69.1
MD11G1010900 Malus domestica HOM05D000687 ORTHO05D000515 1.4e-15 85.5 55 72.7
SalBow3G2053 Salvia bowleyana HOM05D000687 ORTHO05D000515 1.4e-15 85.5 56 66.1
CiPaw.13G174400 Carya illinoinensis HOM05D000687 ORTHO05D000515 1.9e-15 85.1 55 70.9
RcHm_v2.0_Chr5g0081981 Rosa chinensis HOM05D000687 ORTHO05D000515 1.9e-15 85.1 55 67.3
FAN21G1817 Fragaria x ananassa HOM05D000687 ORTHO05D000515 2.5e-15 84.7 55 67.3
RcHm_v2.0_Chr5g0082211 Rosa chinensis HOM05D000687 ORTHO05D000515 2.5e-15 84.7 55 67.3
Migut.N00573 Erythranthe guttata HOM05D000687 ORTHO05D000515 3.2e-15 84.3 56 62.5
THA.LOC104810335 Tarenaya hassleriana HOM05D000687 ORTHO05D000515 4.2e-15 84.0 56 69.6
RcHm_v2.0_Chr5g0081761 Rosa chinensis HOM05D000687 ORTHO05D000515 5.5e-15 83.6 55 67.3
RcHm_v2.0_Chr5g0081931 Rosa chinensis HOM05D000687 ORTHO05D000515 5.5e-15 83.6 55 67.3
RcHm_v2.0_Chr5g0082231 Rosa chinensis HOM05D000687 ORTHO05D000515 5.5e-15 83.6 55 67.3
RcHm_v2.0_Chr5g0082391 Rosa chinensis HOM05D000687 ORTHO05D000515 5.5e-15 83.6 55 67.3
RcHm_v2.0_Chr5g0082501 Rosa chinensis HOM05D000687 ORTHO05D000515 5.5e-15 83.6 55 67.3
RcHm_v2.0_Chr5g0082531 Rosa chinensis HOM05D000687 ORTHO05D000515 5.5e-15 83.6 55 67.3
RcHm_v2.0_Chr5g0082751 Rosa chinensis HOM05D000687 ORTHO05D000515 5.5e-15 83.6 55 67.3
Cc01_g02450 Coffea canephora HOM05D000687 ORTHO05D000515 7.2e-15 83.2 56 64.3
RcHm_v2.0_Chr5g0082171 Rosa chinensis HOM05D000687 ORTHO05D000515 7.2e-15 83.2 55 65.5
MSTRG.12785 Avicennia marina HOM05D000687 ORTHO05D000515 1.6e-14 82.0 54 66.7
Duzib150G0869 Durio zibethinus HOM05D000687 ORTHO05D000515 1.6e-14 82.0 55 67.3
Eucgr.J01800 Eucalyptus grandis HOM05D000687 ORTHO05D000515 1.6e-14 82.0 55 70.9
AUR62000020 Chenopodium quinoa HOM05D000687 ORTHO05D000515 2.1e-14 81.6 56 60.7
Lj2P716T9 Lonicera japonica HOM05D000687 ORTHO05D000515 2.1e-14 81.6 56 69.6
MBI01_g46866_MAGBIO Magnolia biondii HOM05D000687 ORTHO05D000515 2.1e-14 81.6 56 67.9
MBI01_g48122_MAGBIO Magnolia biondii HOM05D000687 ORTHO05D000515 2.1e-14 81.6 56 67.9
RcHm_v2.0_Chr5g0082781 Rosa chinensis HOM05D000687 ORTHO05D000515 2.1e-14 81.6 55 67.3
THA.LOC104815660 Tarenaya hassleriana HOM05D000687 ORTHO05D000515 2.1e-14 81.6 56 67.9
PSO384G0183 Papaver somniferum HOM05D000687 ORTHO05D000515 2.7e-14 81.3 56 57.1
PGR119G2239 Punica granatum HOM05D000687 ORTHO05D000515 2.7e-14 81.3 55 70.9
MELO3C015079.2 Cucumis melo HOM05D000687 ORTHO05D000515 3.6e-14 80.9 56 64.3
Manes.03G088200 Manihot esculenta HOM05D000687 ORTHO05D000515 4.6e-14 80.5 55 67.3
RcHm_v2.0_Chr5g0082001 Rosa chinensis HOM05D000687 ORTHO05D000515 4.6e-14 80.5 55 63.6
Hma1.2p1_0337F.1_g129440 Hydrangea macrophylla HOM05D000687 ORTHO05D000515 6.1e-14 80.1 55 67.3
Lsat_1_v5_gn_1_67781 Lactuca sativa HOM05D000687 ORTHO05D000515 6.1e-14 80.1 55 63.6
Glyma.08G112500 Glycine max HOM05D000687 ORTHO05D000515 1.4e-13 79.0 55 61.8
Psat7g073400 Pisum sativum HOM05D000687 ORTHO05D000515 1.4e-13 79.0 55 63.6
DCAR_024335 Daucus carota HOM05D000687 ORTHO05D000515 1.8e-13 78.6 55 63.6
Sabra01G0006400 Salix brachista HOM05D000687 ORTHO05D000515 2.3e-13 78.2 56 66.1
Cpa.g.sc119.80 Carica papaya HOM05D000687 ORTHO05D000515 3.0e-13 77.8 56 60.7
ECA248G1975 Erigeron canadensis HOM05D000687 ORTHO05D000515 3.0e-13 77.8 55 58.2
ClCG03G012060 Citrullus lanatus HOM05D000687 ORTHO05D000515 3.9e-13 77.4 55 63.6
Potri.003G217300 Populus trichocarpa HOM05D000687 ORTHO05D000515 3.9e-13 77.4 56 66.1
Medtr8g085590 Medicago truncatula HOM05D000687 ORTHO05D000515 5.1e-13 77.0 55 60.0
Potri.001G008240 Populus trichocarpa HOM05D000687 ORTHO05D000515 5.1e-13 77.0 56 64.3
Gohir.D05G318700 Gossypium hirsutum HOM05D000687 ORTHO05D000515 1.1e-12 75.9 55 61.8
Potri.001G008320 Populus trichocarpa HOM05D000687 ORTHO05D000515 1.1e-12 75.9 56 64.3
HanXRQChr11g0344901 Helianthus annuus HOM05D000687 ORTHO05D000515 1.9e-12 75.1 55 60.0
Lalb_Chr07g0186681 Lupinus albus HOM05D000687 ORTHO05D000515 1.9e-12 75.1 56 60.7
TPR.G11818 Trifolium pratense HOM05D000687 ORTHO05D000515 2.5e-12 74.7 55 61.8
Ciclev10016939m.g Citrus clementina HOM05D000687 ORTHO05D000515 3.3e-12 74.3 55 61.8
Atru.chr3.2323 Acer truncatum HOM05D000687 ORTHO05D000515 5.7e-12 73.6 55 58.2
Gorai.009G341700 Gossypium raimondii HOM05D000687 ORTHO05D000515 5.7e-12 73.6 55 60.0
CsaV3_1G043700 Cucumis sativus L. HOM05D000687 ORTHO05D000515 7.4e-12 73.2 56 60.7
Gohir.A05G317000 Gossypium hirsutum HOM05D000687 ORTHO05D000515 9.7e-12 72.8 57 59.6
Phvul.002G234700 Phaseolus vulgaris HOM05D000687 ORTHO05D000515 9.7e-12 72.8 55 54.5
arahy.Tifrunner.gnm1.ann1.3SGI17 Arachis hypogaea HOM05D000001 ORTHO05D001705 1.3e-11 72.4 55 60.0
CSS0010031 Camellia sinensis var. sinensis HOM05D000687 ORTHO05D000515 2.2e-11 71.6 55 60.0
VMungo0251G0264 Vigna mungo HOM05D000687 ORTHO05D000515 2.2e-11 71.6 55 52.7
Lj4g0003071 Lotus japonicus HOM05D000687 ORTHO05D000515 1.1e-10 69.3 55 56.4
AT1G55265 Arabidopsis thaliana HOM05D000687 ORTHO05D000515 4.1e-10 67.4 56 50.0
Thhalv10011815m.g Eutrema salsugineum HOM05D000687 ORTHO05D000515 5.3e-10 67.0 56 50.0
Zm00001eb217080 Zea mays HOM05D000687 ORTHO05D000515 1.2e-09 65.9 56 51.8
Zm00001eb342560 Zea mays HOM05D000687 ORTHO05D000515 1.2e-09 65.9 56 51.8
Sp1g40930 Schrenkiella parvula HOM05D000687 ORTHO05D000515 1.5e-09 65.5 56 48.2
AL1G63310 Arabidopsis lyrata HOM05D000687 ORTHO05D000515 2.0e-09 65.1 56 48.2
Aa31LG10G1030 Aethionema arabicum HOM05D001204 ORTHO05D001428 2.6e-09 64.7 53 54.7
Carub.0001s4377 Capsella rubella HOM05D000687 ORTHO05D000515 3.4e-09 64.3 56 46.4
CARHR044920 Cardamine hirsuta HOM05D000687 ORTHO05D000515 3.4e-09 64.3 56 50.0
BcaB02g10833 Brassica carinata HOM05D000687 ORTHO05D000515 5.9e-09 63.5 56 48.2
BcaC08g44184 Brassica carinata HOM05D000687 ORTHO05D000515 1.3e-08 62.4 56 46.4
BolC6t36781H Brassica oleracea HOM05D000687 ORTHO05D000515 1.3e-08 62.4 56 46.4
SEGI_40499 Sequoiadendron giganteum HOM05D000687 ORTHO05D000515 1.3e-08 62.4 57 50.9
Zm00001eb146640 Zea mays HOM05D000687 ORTHO05D000515 1.3e-08 62.4 56 50.0
A05p17590 Brassica napus HOM05D000687 ORTHO05D000515 1.7e-08 62.0 56 46.4
C06p15890 Brassica napus HOM05D000687 ORTHO05D000515 1.7e-08 62.0 56 46.4
BraA05t20652Z Brassica rapa HOM05D000687 ORTHO05D000515 1.7e-08 62.0 56 46.4
Zm00001eb053630 Zea mays HOM05D000687 ORTHO05D000515 1.7e-08 62.0 56 50.0
Os03g0692700 Oryza sativa ssp. japonica HOM05D000687 ORTHO05D000515 2.2e-08 61.6 55 45.5
Pp3c26_3340 Physcomitrium patens HOM05D000687 ORTHO05D000515 8.5e-08 59.7 56 51.8
HPP92_017555 Vanilla planifolia HOM05D000687 ORTHO05D000515 1.1e-07 59.3 55 40.0
Psat7g073360 Pisum sativum HOM05D000687 ORTHO05D000515 2.5e-07 58.2 55 45.5
SMO334G0071 Selaginella moellendorffii HOM05D000687 ORTHO05D000515 3.2e-07 57.8 57 47.4
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 1.2e-06 55.8 55 47.3
SEGI_33653 Sequoiadendron giganteum HOM05D000687 ORTHO05D000515 1.2e-06 55.8 54 48.1
AagrBONN_evm.TU.Sc2ySwM_368.1300 Anthoceros agrestis HOM05D000687 ORTHO05D000515 1.6e-06 55.5 57 49.1
MSTRG.333 Avicennia marina HOM05D000687 ORTHO05D000515 2.7e-06 54.7 54 44.4
Gohir.A07G158400 Gossypium hirsutum HOM05D000687 ORTHO05D000515 2.7e-06 54.7 54 48.1
Gorai.N002300 Gossypium raimondii HOM05D000687 ORTHO05D000515 2.7e-06 54.7 54 48.1
SEGI_27636 Sequoiadendron giganteum HOM05D000687 ORTHO05D000515 2.7e-06 54.7 47 48.9
Gohir.D07G167800 Gossypium hirsutum HOM05D000687 ORTHO05D000515 3.6e-06 54.3 54 48.1
MBI11_g00124_MAGBIO Magnolia biondii HOM05D000687 ORTHO05D000515 3.6e-06 54.3 57 45.6
Cc09_g03880 Coffea canephora HOM05D000687 ORTHO05D000515 4.7e-06 53.9 54 44.4
Eucgr.H00722 Eucalyptus grandis HOM05D000687 ORTHO05D000515 4.7e-06 53.9 56 46.4
SEGI_30105 Sequoiadendron giganteum HOM05D000687 ORTHO05D000515 6.1e-06 53.5 55 41.8
CAN.G30.14 Capsicum annuum HOM05D000687 ORTHO05D000515 7.9e-06 53.1 54 44.4
PSO384G0006 Papaver somniferum HOM05D000687 ORTHO05D000515 7.9e-06 53.1 55 41.8
Pp3c4_23380 Physcomitrium patens HOM05D000687 ORTHO05D000515 7.9e-06 53.1 56 44.6
SalBow1G0273 Salvia bowleyana HOM05D000687 ORTHO05D000515 7.9e-06 53.1 54 48.1
SalBow3G3219 Salvia bowleyana HOM05D000687 ORTHO05D000515 7.9e-06 53.1 54 46.3


User provided reference genes

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