Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.1e-229 799.7 406 100.0
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.3e-206 723.0 420 89.5
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.7e-206 722.6 404 90.6
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 2.8e-206 721.8 404 89.9
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 3.7e-206 721.5 404 90.1
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 1.2e-204 716.5 407 89.9
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 2.8e-198 695.3 405 87.9
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 9.4e-194 680.2 404 86.4
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 1.2e-172 610.1 401 77.1
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 6.0e-172 607.8 405 76.3
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.3e-171 606.7 386 79.0
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 1.7e-171 606.3 381 80.1
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 3.0e-171 605.5 401 76.8
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 1.9e-170 602.8 404 77.2
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 4.4e-167 591.7 402 74.6
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 9.8e-167 590.5 419 72.1
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 1.3e-166 590.1 405 73.6
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 1.9e-165 586.3 353 80.7
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 3.2e-165 585.5 404 75.0
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 4.1e-165 585.1 366 79.5
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 9.2e-165 583.9 423 71.4
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 3.5e-164 582.0 416 72.6
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 1.7e-163 579.7 404 73.3
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 3.9e-163 578.6 405 73.3
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 2.5e-162 575.9 366 78.7
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 1.2e-161 573.5 382 75.9
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 2.1e-161 572.8 407 72.7
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 2.8e-161 572.4 376 75.8
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 3.6e-161 572.0 360 78.6
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 8.1e-161 570.9 392 73.2
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 2.3e-160 569.3 366 78.4
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 5.2e-160 568.2 393 73.3
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 7.5e-159 564.3 345 81.7
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 2.9e-158 562.4 401 72.6
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 6.4e-158 561.2 352 79.5
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 1.1e-157 560.5 394 73.1
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 1.4e-157 560.1 352 79.3
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 1.9e-157 559.7 372 75.3
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 1.9e-157 559.7 376 73.7
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 1.9e-157 559.7 351 77.8
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 1.9e-157 559.7 352 79.5
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 3.2e-157 558.9 346 77.7
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 4.1e-157 558.5 385 72.5
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 4.1e-157 558.5 352 79.3
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 2.1e-156 556.2 385 73.0
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 2.7e-156 555.8 404 70.3
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 3.5e-156 555.4 372 74.5
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 3.5e-156 555.4 410 69.3
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 1.0e-155 553.9 386 72.5
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 1.0e-155 553.9 352 78.4
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 1.3e-155 553.5 352 78.1
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 2.3e-155 552.7 398 69.8
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 2.3e-155 552.7 352 78.7
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 2.3e-155 552.7 404 69.1
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 3.0e-155 552.4 406 68.7
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 3.9e-155 552.0 375 73.1
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 5.1e-155 551.6 344 77.0
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 5.1e-155 551.6 372 73.1
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 6.6e-155 551.2 344 77.3
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 8.6e-155 550.8 405 70.4
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 8.6e-155 550.8 405 70.4
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.1e-154 550.4 345 78.3
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.1e-154 550.4 386 72.0
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 1.1e-154 550.4 344 77.9
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 1.5e-154 550.1 402 70.9
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 3.3e-154 548.9 373 73.7
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 3.3e-154 548.9 346 76.6
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 3.3e-154 548.9 352 75.9
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 4.3e-154 548.5 365 74.0
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 5.6e-154 548.1 344 78.5
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 5.6e-154 548.1 402 69.9
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 9.5e-154 547.4 380 71.3
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 1.6e-153 546.6 352 75.6
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 1.6e-153 546.6 344 77.9
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 1.6e-153 546.6 352 75.9
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 2.1e-153 546.2 351 76.9
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 2.8e-153 545.8 357 75.6
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 3.6e-153 545.4 404 69.6
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 4.7e-153 545.0 405 68.6
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 4.7e-153 545.0 351 75.5
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 4.7e-153 545.0 375 72.8
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 6.2e-153 544.7 363 76.0
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 6.2e-153 544.7 406 67.2
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 2.4e-152 542.7 405 68.9
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 3.1e-152 542.3 399 69.9
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 3.1e-152 542.3 365 73.4
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 8.9e-152 540.8 406 67.7
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 1.5e-151 540.0 351 75.8
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 2.0e-151 539.7 352 74.7
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 2.6e-151 539.3 412 68.0
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 3.4e-151 538.9 366 73.8
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 9.9e-151 537.3 431 65.4
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 9.9e-151 537.3 390 70.0
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 1.7e-150 536.6 409 69.7
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 1.2e-148 530.4 419 67.3
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 2.1e-148 529.6 372 71.8
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 7.8e-148 527.7 366 69.9
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 1.0e-147 527.3 380 72.1
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 1.0e-147 527.3 327 80.7
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 4.3e-146 521.9 370 69.5
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 7.3e-146 521.2 359 73.3
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 3.6e-145 518.8 369 69.6
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 1.8e-144 516.5 346 71.7
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 9.0e-144 514.2 379 67.3
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 9.0e-144 514.2 314 79.9
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 2.1e-140 503.1 380 68.4
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 9.6e-138 494.2 314 78.7
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 1.8e-136 490.0 402 63.7
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 6.9e-136 488.0 343 69.4
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 1.2e-135 487.3 449 59.0
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 9.9e-135 484.2 405 64.4
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 6.0e-132 474.9 352 70.2
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 8.7e-131 471.1 292 79.5
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.5e-130 470.3 352 69.6
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 3.7e-129 465.7 574 47.2
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 5.3e-128 461.8 372 61.3
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 1.5e-122 443.7 346 63.6
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 1.1e-117 427.6 287 74.6
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 3.3e-106 389.4 360 60.6
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 4.5e-79 299.3 194 76.8
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 2.1e-68 263.8 373 44.0
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 2.0e-66 257.3 147 81.0
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 1.9e-61 240.7 214 57.0
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 2.3e-59 233.8 286 49.7
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 3.7e-49 199.9 129 75.2
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 8.3e-49 198.7 186 60.2
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 1.6e-44 184.5 112 80.4
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 1.1e-40 171.8 112 74.1
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 1.4e-32 144.8 368 30.4
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 3.5e-31 140.2 81 77.8
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 7.3e-29 132.5 99 66.7
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 3.2e-24 117.1 66 80.3
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 1.4e-11 75.1 53 67.9
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 1.4e-11 75.1 93 48.4
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 8.4e-09 65.9 41 70.7
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 7.9e-07 59.3 39 64.1


User provided reference genes

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