Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 7.5e-65 250.4 126 100.0
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.8e-42 176.0 135 71.9
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 6.6e-37 157.5 129 65.1
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 1.6e-35 152.9 129 62.0
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 2.8e-35 152.1 135 63.7
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 4.7e-35 151.4 129 62.0
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 2.3e-34 149.1 128 64.8
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 9.6e-28 127.1 131 52.7
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 4.0e-26 121.7 131 51.1
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.6e-22 109.8 121 51.2
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 3.9e-21 105.1 116 50.0
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 1.1e-20 103.6 122 47.5
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 3.3e-20 102.1 126 44.4
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 1.6e-19 99.8 136 40.4
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 6.2e-19 97.8 132 42.4
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 8.1e-19 97.4 126 41.3
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 1.1e-18 97.1 122 46.7
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 2.4e-18 95.9 137 43.8
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 3.1e-18 95.5 135 40.7
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 1.5e-17 93.2 117 45.3
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 2.0e-17 92.8 125 41.6
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 2.6e-17 92.4 125 43.2
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 3.4e-17 92.0 122 45.1
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 3.4e-17 92.0 135 37.8
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 3.4e-17 92.0 122 41.8
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 9.9e-17 90.5 113 45.1
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 3.8e-16 88.6 132 37.1
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 3.8e-16 88.6 115 42.6
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 3.8e-16 88.6 126 39.7
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 4.9e-16 88.2 121 43.0
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 8.4e-16 87.4 123 39.0
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 1.1e-15 87.0 140 37.1
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 1.4e-15 86.7 125 38.4
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.4e-15 85.9 135 37.8
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.4e-15 85.9 135 37.8
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 3.2e-15 85.5 114 41.2
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 4.2e-15 85.1 129 38.8
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 4.2e-15 85.1 124 41.9
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 1.6e-14 83.2 118 40.7
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 1.6e-14 83.2 109 44.0
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.6e-14 83.2 135 38.5
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.6e-14 83.2 126 38.9
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 2.1e-14 82.8 111 41.4
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 3.5e-14 82.0 128 38.3
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 1.3e-13 80.1 118 39.8
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 1.3e-13 80.1 111 39.6
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 1.3e-13 80.1 127 38.6
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 1.3e-13 80.1 127 38.6
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 1.3e-13 80.1 122 37.7
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 1.7e-13 79.7 134 35.1
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 2.3e-13 79.3 133 37.6
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 3.0e-13 79.0 114 39.5
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 5.1e-13 78.2 114 39.5
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 8.7e-13 77.4 121 38.8
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 4.3e-12 75.1 127 37.0
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 4.3e-12 75.1 117 36.8
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 5.6e-12 74.7 133 36.1
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 5.6e-12 74.7 119 37.8
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 1.3e-11 73.6 110 37.3
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 1.3e-11 73.6 112 39.3
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 1.6e-11 73.2 130 40.0
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 1.6e-11 73.2 117 34.2
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 1.6e-11 73.2 116 40.5
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 2.1e-11 72.8 137 36.5
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 3.6e-11 72.0 123 35.0
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 4.8e-11 71.6 124 37.9
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 6.2e-11 71.2 129 39.5
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 6.2e-11 71.2 129 39.5
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 6.2e-11 71.2 129 38.0
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 1.1e-10 70.5 123 37.4
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 1.4e-10 70.1 129 39.5
DCAR_019537 Daucus carota HOM05D006278 ORTHO05D007526 1.4e-10 70.1 130 35.4
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 1.8e-10 69.7 129 39.5
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 1.8e-10 69.7 132 37.9
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 1.8e-10 69.7 136 31.6
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 1.8e-10 69.7 121 34.7
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 4.0e-10 68.6 130 37.7
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 4.0e-10 68.6 124 30.6
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 5.3e-10 68.2 83 42.2
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 5.3e-10 68.2 114 37.7
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 6.9e-10 67.8 105 37.1
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 6.9e-10 67.8 125 36.0
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 6.9e-10 67.8 116 33.6
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 1.2e-09 67.0 117 35.0
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 1.5e-09 66.6 103 38.8
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 1.5e-09 66.6 135 37.0
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 1.5e-09 66.6 115 32.2
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 2.6e-09 65.9 132 35.6
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 2.6e-09 65.9 109 40.4
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 3.4e-09 65.5 100 35.0
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 7.6e-09 64.3 112 33.0
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 9.9e-09 63.9 127 34.6
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 9.9e-09 63.9 119 33.6
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 1.3e-08 63.5 106 37.7
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 2.9e-08 62.4 134 35.1
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 3.8e-08 62.0 102 40.2
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 4.9e-08 61.6 118 31.4
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 4.9e-08 61.6 97 33.0
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 4.9e-08 61.6 97 34.0
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 8.4e-08 60.8 99 34.3
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 1.4e-07 60.1 139 28.8
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.4e-07 60.1 122 30.3
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 1.9e-07 59.7 121 33.1
DCAR_020977 Daucus carota HOM05D006278 ORTHO05D007526 3.2e-07 58.9 111 34.2
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 3.2e-07 58.9 98 30.6
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 4.2e-07 58.5 88 34.1
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 5.5e-07 58.2 121 33.9
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 5.5e-07 58.2 93 32.3
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 5.5e-07 58.2 112 30.4
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 7.1e-07 57.8 97 33.0
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 7.1e-07 57.8 97 29.9
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 7.1e-07 57.8 109 33.9
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 1.2e-06 57.0 127 30.7
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 1.6e-06 56.6 121 32.2
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 1.6e-06 56.6 96 29.2
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 2.1e-06 56.2 101 33.7
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 2.1e-06 56.2 122 32.0
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 2.1e-06 56.2 122 33.6
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 4.6e-06 55.1 132 33.3
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 4.6e-06 55.1 105 36.2
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 6.0e-06 54.7 151 29.8
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 6.0e-06 54.7 112 31.2
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 7.9e-06 54.3 125 30.4
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 7.9e-06 54.3 121 33.1
Sed0011246 Sechium edule HOM05D006278 ORTHO05D007526 7.9e-06 54.3 78 39.7
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 7.9e-06 54.3 124 32.3


User provided reference genes

Program Settings