Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003709g0080 Nicotiana tabacum HOM05D012582 ORTHO05D011721 2.0e-58 228.8 109 100.0
Nitab4.5_0014136g0020 Nicotiana tabacum HOM05D012582 ORTHO05D011721 5.4e-19 97.8 46 100.0
Peaxi162Scf00489g00024 Petunia axillaris HOM05D012582 ORTHO05D011721 1.2e-18 96.7 46 97.8
Peaxi162Scf02119g00002 Petunia axillaris HOM05D011634 ORTHO05D011721 1.2e-18 96.7 46 97.8
Solyc00g164580.1 Solanum lycopersicum HOM05D011634 ORTHO05D011721 1.2e-18 96.7 46 97.8
Nitab4.5_0000307g0300 Nicotiana tabacum HOM05D012582 ORTHO05D011721 4.5e-18 94.7 46 95.7
Nitab4.5_0010033g0060 Nicotiana tabacum HOM05D012582 ORTHO05D011721 2.9e-17 92.0 46 93.5
Nitab4.5_0000844g0070 Nicotiana tabacum HOM05D012582 ORTHO05D011721 3.3e-16 88.6 46 91.3
Nitab4.5_0000886g0170 Nicotiana tabacum HOM05D011634 ORTHO05D011721 2.1e-15 85.9 46 87.0
Nitab4.5_0000172g1690 Nicotiana tabacum HOM05D011634 ORTHO05D011721 8.0e-15 84.0 46 89.1
Nitab4.5_0000676g0250 Nicotiana tabacum HOM05D012582 ORTHO05D011721 1.3e-09 66.6 32 100.0
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 3.0e-09 65.5 49 69.4
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 3.0e-09 65.5 49 69.4
TPR.G15690 Trifolium pratense HOM05D001560 ORTHO05D004675 3.0e-09 65.5 49 69.4
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
arahy.Tifrunner.gnm1.ann1.11DKXG Arachis hypogaea HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
arahy.Tifrunner.gnm1.ann1.E4X7TI Arachis hypogaea HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
Ca_22175_v3 Cicer arietinum L. HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
CsaV3_5G015950 Cucumis sativus L. HOM05D001560 ORTHO05D004675 3.9e-09 65.1 46 71.7
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
Sopen00g002540 Solanum pennellii HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
PGSC0003DMG400018984 Solanum tuberosum HOM05D001560 ORTHO05D004675 3.9e-09 65.1 30 96.7
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 6.6e-09 64.3 30 93.3
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 6.6e-09 64.3 30 93.3
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 8.6e-09 63.9 30 93.3
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 8.6e-09 63.9 30 93.3
CARHR287160 Cardamine hirsuta HOM05D001560 ORTHO05D004675 1.1e-08 63.5 58 58.6
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.1e-08 63.5 46 69.6
Nitab4.5_0002325g0070 Nicotiana tabacum HOM05D012582 ORTHO05D011721 1.1e-08 63.5 32 90.6
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 1.9e-08 62.8 30 93.3
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 1.9e-08 62.8 30 93.3
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 1.9e-08 62.8 30 93.3
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 2.5e-08 62.4 30 93.3
Dinv29327 Davidia involucrata HOM05D001560 ORTHO05D004675 2.5e-08 62.4 30 93.3
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 2.5e-08 62.4 30 93.3
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 2.5e-08 62.4 30 93.3
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 2.5e-08 62.4 30 93.3
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 2.5e-08 62.4 30 93.3
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 2.5e-08 62.4 30 93.3
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 2.5e-08 62.4 30 93.3
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 2.5e-08 62.4 30 93.3
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 2.5e-08 62.4 30 93.3
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 2.5e-08 62.4 30 93.3
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 3.3e-08 62.0 30 93.3
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 3.3e-08 62.0 30 93.3
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 3.3e-08 62.0 30 93.3
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 3.3e-08 62.0 30 93.3
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 3.3e-08 62.0 30 93.3
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 3.3e-08 62.0 30 90.0
Nitab4.5_0000686g0150 Nicotiana tabacum HOM05D011634 ORTHO05D011721 4.3e-08 61.6 29 89.7
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 5.6e-08 61.2 30 93.3
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 5.6e-08 61.2 30 90.0
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 5.6e-08 61.2 30 90.0
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 9.5e-08 60.5 30 90.0
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 9.5e-08 60.5 30 90.0
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 9.5e-08 60.5 52 59.6
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.2e-07 60.1 30 90.0
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.2e-07 60.1 30 90.0
ECA041G0003 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.2e-07 60.1 30 90.0
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.2e-07 60.1 30 90.0
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-07 59.7 30 90.0
Os12g0422971 Oryza sativa ssp. japonica HOM05D001560 ORTHO05D004675 2.1e-07 59.3 30 90.0
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-07 59.3 30 86.7
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 2.8e-07 58.9 29 89.7
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 3.6e-07 58.5 30 86.7
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 4.7e-07 58.2 29 89.7
SHI45393 Sapria himalayana HOM05D001560 ORTHO05D004675 4.7e-07 58.2 29 89.7
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 6.2e-07 57.8 46 65.2
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 6.2e-07 57.8 28 92.9
SHI53856 Sapria himalayana HOM05D001560 ORTHO05D004675 8.0e-07 57.4 59 55.9
SHI26652 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-06 56.6 29 89.7
Solyc01g020470.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 1.4e-06 56.6 30 83.3
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 1.8e-06 56.2 30 86.7
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-06 56.2 30 83.3
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-06 56.2 29 86.2
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 1.8e-06 56.2 30 86.7
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 2.3e-06 55.8 30 83.3
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 4.0e-06 55.1 46 58.7
SHI35231 Sapria himalayana HOM05D001560 ORTHO05D004675 4.0e-06 55.1 30 86.7
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 4.0e-06 55.1 30 86.7
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 5.2e-06 54.7 30 83.3
CDE02G2746 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 5.2e-06 54.7 30 83.3
SHI42241 Sapria himalayana HOM05D001560 ORTHO05D004675 5.2e-06 54.7 30 83.3
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 8.9e-06 53.9 30 86.7


User provided reference genes

Program Settings