Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 0.0e+00 1171.4 589 100.0
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 0.0e+00 1114.0 584 96.1
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 1.2e-293 1012.7 598 84.9
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 1.2e-266 922.9 596 78.9
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 2.5e-243 845.5 598 70.6
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 3.7e-239 831.6 598 70.6
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 2.6e-237 825.5 598 69.1
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 2.1e-234 815.8 668 63.9
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 3.6e-234 815.1 600 68.5
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 3.3e-232 808.5 600 68.0
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 6.5e-228 794.3 672 61.9
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 2.3e-225 785.8 600 66.7
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 2.6e-224 782.3 594 66.2
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 1.4e-222 776.5 601 65.4
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 5.0e-220 768.1 635 61.3
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 8.5e-220 767.3 596 64.8
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 1.1e-219 766.9 630 63.3
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 1.0e-217 760.4 598 65.1
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 5.2e-217 758.1 596 64.9
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 6.7e-217 757.7 596 63.4
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 1.5e-216 756.5 596 63.9
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 1.5e-216 756.5 608 63.3
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 2.6e-216 755.7 596 64.3
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 2.6e-216 755.7 595 64.9
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 7.5e-216 754.2 596 64.1
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 1.7e-215 753.1 599 62.9
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.7e-215 753.1 595 64.0
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 8.2e-215 750.7 597 63.3
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.7e-213 745.7 596 63.6
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 5.9e-213 744.6 597 61.8
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 5.5e-211 738.0 596 62.2
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 2.3e-209 732.6 601 62.7
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 3.0e-209 732.3 601 62.4
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 5.2e-209 731.5 622 60.9
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 6.8e-209 731.1 596 63.3
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 8.8e-209 730.7 601 62.2
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 8.8e-209 730.7 597 62.3
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.5e-208 729.9 601 62.4
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 2.0e-208 729.6 601 63.1
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 2.0e-208 729.6 596 61.6
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 3.4e-208 728.8 598 63.2
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 4.4e-208 728.4 596 62.9
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 5.7e-208 728.0 598 62.5
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 9.8e-208 727.2 596 62.1
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.3e-207 726.9 602 61.3
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.3e-207 726.9 599 62.6
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 1.7e-207 726.5 597 62.3
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 2.2e-207 726.1 596 62.1
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 2.2e-207 726.1 594 62.0
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 8.3e-207 724.2 597 62.5
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.7e-205 719.2 597 60.6
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 1.5e-203 713.4 597 60.6
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 4.2e-203 711.8 596 60.4
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 7.2e-203 711.1 597 61.5
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 7.2e-203 711.1 596 60.9
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 9.5e-203 710.7 596 60.7
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 2.1e-202 709.5 596 60.1
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 3.6e-202 708.8 597 62.1
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 1.0e-201 707.2 597 62.0
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 1.4e-201 706.8 596 61.2
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 8.9e-201 704.1 596 60.1
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 1.5e-200 703.4 597 62.8
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 3.4e-200 702.2 595 61.0
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 4.4e-200 701.8 605 58.0
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 7.5e-200 701.0 537 64.8
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 1.3e-199 700.3 597 58.5
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 1.3e-199 700.3 596 59.9
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 6.3e-199 698.0 616 58.0
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 8.3e-199 697.6 597 61.6
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 1.2e-197 693.7 603 59.2
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 2.7e-197 692.6 605 56.9
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 4.5e-197 691.8 602 59.8
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.0e-196 690.6 596 59.9
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 1.0e-196 690.6 595 59.2
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 6.6e-196 688.0 615 58.0
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 1.2e-194 683.7 600 57.7
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 2.3e-193 679.5 603 58.4
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 8.9e-193 677.6 595 59.8
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-190 670.6 524 68.5
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 4.1e-190 668.7 598 58.5
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 2.3e-188 662.9 597 59.5
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 5.6e-187 658.3 561 59.7
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 1.2e-186 657.1 596 57.4
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 2.1e-186 656.4 598 57.4
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 5.2e-185 651.7 598 56.2
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 4.4e-184 648.7 598 56.7
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 1.4e-182 643.7 598 56.5
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 4.1e-182 642.1 559 59.2
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 7.0e-182 641.3 598 56.7
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 9.2e-182 641.0 602 54.8
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 6.0e-181 638.3 598 56.5
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 3.9e-180 635.6 598 56.2
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 3.9e-180 635.6 598 56.2
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 1.9e-179 633.3 559 57.8
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 8.9e-177 624.4 597 54.8
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 9.9e-176 620.9 598 53.7
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 2.1e-173 613.2 504 61.7
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 3.5e-173 612.5 597 54.6
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 7.8e-173 611.3 597 54.4
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 7.1e-166 588.2 603 51.7
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 8.1e-162 574.7 600 52.3
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 1.2e-160 570.9 629 49.8
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 4.4e-160 568.9 607 50.7
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 1.2e-157 560.8 595 51.9
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 1.3e-154 550.8 420 66.7
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 8.1e-154 548.1 602 48.7
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 1.3e-148 530.8 528 54.7
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 3.0e-148 529.6 528 54.5
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 9.6e-147 524.6 469 58.8
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 2.1e-146 523.5 443 60.5
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 1.7e-135 487.3 550 49.8
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 1.7e-119 434.1 616 41.2
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 3.8e-119 433.0 249 89.2
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 5.3e-113 412.5 395 55.2
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.3e-111 407.9 605 41.8
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 4.2e-110 402.9 582 42.1
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 6.1e-109 399.1 610 38.2
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.6e-107 393.7 305 60.7
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 2.5e-102 377.1 600 41.2
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.6e-99 367.1 279 65.6
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 1.4e-97 361.3 301 62.8
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 4.7e-93 346.3 398 50.5
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 2.3e-92 344.0 284 63.7
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 9.8e-91 338.6 626 35.6
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 3.5e-88 330.1 246 73.2
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 1.1e-73 282.0 604 32.1
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 1.7e-71 274.6 430 40.9
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 8.6e-71 272.3 455 39.8
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.9e-65 254.6 291 50.9
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 2.9e-58 230.7 276 47.1
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 7.8e-56 222.6 133 74.4
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 8.9e-52 209.1 166 62.0
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 8.1e-45 186.0 141 61.0
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 3.8e-42 177.2 601 28.0
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 2.4e-36 157.9 134 56.7
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 1.2e-35 155.6 127 59.8
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 7.1e-33 146.4 379 30.6
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 6.7e-31 139.8 115 60.9
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 8.1e-29 132.9 94 64.9
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 2.6e-27 127.9 135 43.0
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 3.9e-23 114.0 123 49.6
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 1.6e-21 108.6 106 58.5
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 2.1e-16 91.7 301 27.6
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 1.5e-14 85.5 102 44.1
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.9e-14 85.1 81 55.6
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 3.3e-14 84.3 88 45.5
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 7.4e-14 83.2 55 65.5
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 1.5e-11 75.5 58 65.5
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 2.0e-11 75.1 42 78.6
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 3.4e-11 74.3 41 80.5
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 5.9e-11 73.6 41 80.5
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 7.7e-11 73.2 96 44.8
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 7.7e-11 73.2 96 44.8
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 1.4e-09 68.9 57 56.1


User provided reference genes

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