Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 2.9e-199 698.4 348 100.0
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 9.0e-185 650.2 334 97.0
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 5.1e-156 554.7 313 87.5
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 9.0e-153 543.9 311 88.1
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 1.4e-150 536.6 309 87.4
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 5.7e-147 524.6 309 86.1
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 7.4e-147 524.2 312 85.3
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 1.1e-126 457.2 322 68.6
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 6.3e-122 441.4 309 70.2
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 3.1e-121 439.1 310 69.4
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 7.7e-120 434.5 306 69.6
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 1.5e-118 430.3 309 66.7
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 1.9e-118 429.9 308 67.2
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 9.4e-118 427.6 308 68.2
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 9.4e-118 427.6 309 67.3
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 1.8e-116 423.3 310 66.8
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 3.0e-116 422.5 311 67.2
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 3.0e-116 422.5 310 67.1
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 3.0e-116 422.5 309 66.7
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 3.0e-116 422.5 319 65.2
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 1.2e-115 420.6 313 66.5
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 2.6e-115 419.5 308 64.9
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.8e-114 416.0 310 64.5
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.7e-114 415.6 309 64.7
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 3.7e-114 415.6 311 65.6
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 3.7e-114 415.6 309 66.3
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 3.7e-114 415.6 313 64.2
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 1.1e-113 414.1 320 62.2
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 5.4e-113 411.8 303 67.3
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 1.2e-112 410.6 312 66.3
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 2.7e-112 409.5 309 65.0
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 3.5e-112 409.1 312 63.5
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 3.5e-112 409.1 316 64.6
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 5.9e-112 408.3 312 63.1
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 1.3e-111 407.1 311 63.7
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 2.3e-111 406.4 338 61.2
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 2.9e-111 406.0 309 63.8
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 3.8e-111 405.6 309 63.8
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 6.6e-111 404.8 312 65.7
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 8.6e-111 404.4 313 63.9
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 1.5e-110 403.7 343 60.3
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 1.9e-110 403.3 333 61.9
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 1.9e-110 403.3 312 62.2
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.9e-110 403.3 312 63.1
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.5e-110 402.9 306 63.1
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 3.3e-110 402.5 307 65.1
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 3.3e-110 402.5 307 65.1
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 4.3e-110 402.1 333 61.6
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 4.3e-110 402.1 310 62.3
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 7.3e-110 401.4 310 64.2
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 7.3e-110 401.4 314 64.3
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 7.3e-110 401.4 306 62.4
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 1.2e-109 400.6 304 66.4
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 1.6e-109 400.2 318 63.5
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 1.6e-109 400.2 310 62.6
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 2.1e-109 399.8 297 66.7
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.3e-108 396.4 309 66.3
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 5.2e-108 395.2 308 64.9
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 6.8e-108 394.8 313 62.3
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 1.5e-107 393.7 306 62.7
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 4.4e-107 392.1 308 63.3
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 5.7e-107 391.7 312 61.9
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 7.5e-107 391.3 303 65.0
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 9.8e-107 391.0 315 62.2
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 1.7e-106 390.2 308 63.0
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 8.3e-106 387.9 292 66.4
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 3.2e-105 386.0 307 61.9
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 4.1e-105 385.6 308 62.3
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 9.2e-105 384.4 335 56.4
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 9.2e-105 384.4 311 61.4
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 1.2e-104 384.0 307 60.3
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 3.9e-103 379.0 308 61.7
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 8.6e-103 377.9 302 62.6
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 1.9e-102 376.7 310 61.3
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 3.3e-102 375.9 309 57.6
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 2.8e-101 372.9 301 61.5
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 1.4e-100 370.5 309 61.8
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 4.0e-100 369.0 312 57.4
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.6e-99 366.3 302 63.2
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.4e-99 365.9 302 63.2
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 1.3e-98 364.0 356 53.7
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.7e-98 363.6 302 61.9
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.7e-98 363.6 302 61.9
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 2.2e-98 363.2 302 62.9
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 3.7e-98 362.5 323 54.5
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.9e-98 362.1 302 62.3
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.3e-98 361.3 302 61.9
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-97 360.9 301 62.8
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-97 360.9 301 62.8
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 1.4e-97 360.5 302 61.9
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.2e-96 357.5 310 56.5
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 4.6e-96 355.5 309 57.3
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 1.3e-95 354.0 306 58.2
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 5.0e-95 352.1 280 61.1
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 6.6e-95 351.7 311 55.9
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 4.3e-94 349.0 275 61.8
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.8e-93 346.3 301 60.5
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 3.6e-93 345.9 306 56.5
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 4.7e-93 345.5 266 65.0
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 1.8e-92 343.6 306 53.6
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 8.9e-92 341.3 308 59.7
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 1.5e-91 340.5 310 56.8
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.6e-91 339.7 229 67.2
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 2.6e-91 339.7 307 54.7
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.2e-88 330.9 306 51.6
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.3e-87 327.4 306 51.3
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 1.5e-86 323.9 351 50.1
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 8.1e-85 318.2 306 50.3
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.1e-84 317.8 315 53.3
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 2.3e-84 316.6 307 50.5
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 6.8e-84 315.1 307 52.4
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 8.9e-84 314.7 308 51.9
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.6e-83 313.2 259 56.8
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 2.6e-83 313.2 313 54.0
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 3.4e-83 312.8 309 51.5
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 4.9e-82 308.9 307 49.5
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 4.9e-82 308.9 307 49.5
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.4e-81 307.4 206 71.8
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 4.1e-81 305.8 306 50.0
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 1.2e-80 304.3 308 49.4
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 1.2e-80 304.3 308 49.4
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 1.6e-80 303.9 309 49.2
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 6.0e-80 302.0 308 49.4
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 1.5e-78 297.4 305 48.5
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 9.9e-75 284.6 183 71.0
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 1.1e-73 281.2 305 46.6
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 1.9e-73 280.4 322 45.3
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 8.1e-69 265.0 315 45.4
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 1.8e-68 263.8 196 60.2
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.3e-66 257.7 215 56.3
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 3.5e-64 249.6 258 50.8
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 1.9e-62 243.8 264 54.2
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 2.8e-61 240.0 150 70.7
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 3.7e-53 213.0 171 55.0
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 5.8e-51 205.7 144 60.4
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 2.4e-44 183.7 167 61.7
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.5e-43 181.0 343 35.3
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 1.9e-38 164.1 159 58.5
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 7.4e-38 162.2 207 45.9
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.0e-23 113.6 78 57.7
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 2.8e-21 107.1 231 31.2
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 6.3e-21 105.9 283 29.0
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 1.1e-20 105.1 51 88.2
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 1.6e-19 101.3 316 27.2
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 4.5e-19 99.8 162 34.0
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 5.0e-18 96.3 156 44.9
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 1.5e-14 84.7 52 73.1
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 2.0e-14 84.3 71 52.1
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 4.1e-12 76.6 102 49.0
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.0e-12 75.9 72 59.7
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 5.0e-10 69.7 282 24.5
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 2.7e-08 63.9 95 43.2
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 2.7e-08 63.9 217 28.1
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 3.6e-08 63.5 157 32.5
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 4.7e-08 63.2 158 32.9
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 6.1e-08 62.8 53 52.8
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 8.0e-08 62.4 257 27.2
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.4e-07 61.6 217 27.2
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 1.8e-07 61.2 206 25.7
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 3.0e-07 60.5 217 27.6
Pp3c8_2710 Physcomitrium patens HOM05D004773 ORTHO05D005943 4.0e-07 60.1 94 29.8
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 1.2e-06 58.5 217 26.7
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 1.5e-06 58.2 216 25.0
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 2.0e-06 57.8 46 47.8
Cfa027142 Carpinus fangiana HOM05D004773 ORTHO05D005943 5.7e-06 56.2 233 26.2


User provided reference genes

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