Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003654g0010 Nicotiana tabacum HOM05D006146 ORTHO05D007924 3.3e-271 937.9 530 100.0
Nitab4.5_0000195g0240 Nicotiana tabacum HOM05D006146 ORTHO05D007924 2.4e-250 868.6 568 87.3
Peaxi162Scf01132g00127 Petunia axillaris HOM05D006146 ORTHO05D007924 3.8e-235 818.1 576 77.3
Solyc09g005120.3 Solanum lycopersicum HOM05D006146 ORTHO05D007924 3.7e-230 801.6 575 75.3
Sopen09g001100 Solanum pennellii HOM05D006146 ORTHO05D007924 1.8e-229 799.3 575 75.0
PGSC0003DMG400006271 Solanum tuberosum HOM05D006146 ORTHO05D007924 1.8e-229 799.3 586 75.8
CAN.G133.15 Capsicum annuum HOM05D006146 ORTHO05D007924 4.6e-225 784.6 575 75.0
Cc06_g01080 Coffea canephora HOM05D006146 ORTHO05D007924 1.1e-181 640.6 548 62.0
Cfa017174 Carpinus fangiana HOM05D006146 ORTHO05D007924 4.0e-176 622.1 552 60.3
Dinv16910 Davidia involucrata HOM05D006146 ORTHO05D007924 7.5e-175 617.8 549 59.7
vmacro20300 Vaccinium macrocarpon HOM05D006146 ORTHO05D007924 1.8e-173 613.2 559 57.8
Oeu042663.2 Olea europaea HOM05D006146 ORTHO05D007924 2.4e-173 612.8 548 63.1
CSS0000590 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 3.2e-173 612.5 549 61.4
CSS0012094 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 3.2e-173 612.5 549 61.4
CiPaw.09G211700 Carya illinoinensis HOM05D006146 ORTHO05D007924 1.0e-171 607.4 578 57.8
Prupe.6G280600 Prunus persica HOM05D006146 ORTHO05D007924 8.9e-168 594.3 549 59.6
TAR636G3413 Trochodendron aralioides HOM05D006146 ORTHO05D007924 1.5e-167 593.6 549 60.5
Gohir.A09G166500 Gossypium hirsutum HOM05D006146 ORTHO05D007924 2.0e-167 593.2 557 60.3
Thecc.05G012100 Theobroma cacao HOM05D006146 ORTHO05D007924 1.3e-166 590.5 559 59.9
RcHm_v2.0_Chr3g0462541 Rosa chinensis HOM05D006146 ORTHO05D007924 1.7e-166 590.1 549 56.3
QL07p034872 Quercus lobata HOM05D006146 ORTHO05D007924 3.7e-166 589.0 549 59.4
CANSAT35G1531 Cannabis sativa HOM05D006146 ORTHO05D007924 8.3e-166 587.8 558 59.5
MSTRG.5562 Avicennia marina HOM05D006146 ORTHO05D007924 1.9e-165 586.6 547 59.6
Gohir.D09G162100 Gossypium hirsutum HOM05D006146 ORTHO05D007924 7.0e-165 584.7 557 59.8
Gorai.006G183800 Gossypium raimondii HOM05D006146 ORTHO05D007924 1.6e-164 583.6 557 59.6
Haze_21031 Corylus avellana HOM05D006146 ORTHO05D007924 2.0e-164 583.2 554 60.8
Atru.chr8.2278 Acer truncatum HOM05D006146 ORTHO05D007924 9.5e-162 574.3 545 57.6
Glyma.18G204000 Glycine max HOM05D006146 ORTHO05D007924 1.2e-161 573.9 547 57.6
MD00G1062300 Malus domestica HOM05D006146 ORTHO05D007924 2.8e-161 572.8 546 55.5
Ciclev10011366m.g Citrus clementina HOM05D006146 ORTHO05D007924 8.1e-161 571.2 548 58.2
EL10Ac5g12530 Beta vulgaris HOM05D006146 ORTHO05D007924 1.4e-160 570.5 545 59.3
Lj1g0005300 Lotus japonicus HOM05D006146 ORTHO05D007924 4.0e-160 568.9 582 55.5
Lj2C71G10 Lonicera japonica HOM05D003030 ORTHO05D003610 4.4e-159 565.5 532 57.9
SGA_v2.0_scaffold85G26717 Striga asiatica HOM05D006146 ORTHO05D007924 5.8e-159 565.1 563 56.0
MELO3C009146.2 Cucumis melo HOM05D006146 ORTHO05D007924 7.5e-159 564.7 550 59.3
Nn2g10908 Nelumbo nucifera HOM05D006146 ORTHO05D007924 4.9e-158 562.0 549 57.7
FAN14G4754 Fragaria x ananassa HOM05D006146 ORTHO05D007924 1.1e-157 560.8 564 54.3
Migut.J00133 Erythranthe guttata HOM05D006146 ORTHO05D007924 1.4e-157 560.5 536 57.5
AUR62030469 Chenopodium quinoa HOM05D006146 ORTHO05D007924 3.2e-157 559.3 553 61.5
FvH4_6g11110 Fragaria vesca HOM05D006146 ORTHO05D007924 3.2e-157 559.3 564 54.3
Manes.08G094300 Manihot esculenta HOM05D006146 ORTHO05D007924 3.2e-157 559.3 560 56.4
SalBow5G2678 Salvia bowleyana HOM05D006146 ORTHO05D007924 4.1e-157 558.9 566 57.1
arahy.Tifrunner.gnm1.ann1.S46L09 Arachis hypogaea HOM05D006146 ORTHO05D007924 2.7e-156 556.2 599 56.3
Hund14889 Selenicereus undatus HOM05D006146 ORTHO05D007924 3.5e-156 555.8 551 55.7
MD12G1172300 Malus domestica HOM05D006146 ORTHO05D007924 1.0e-155 554.3 549 56.1
FAN02G2047 Fragaria x ananassa HOM05D006146 ORTHO05D007924 2.3e-155 553.1 594 52.4
CsaV3_3G033560 Cucumis sativus L. HOM05D006146 ORTHO05D007924 8.6e-155 551.2 549 58.5
Gorai.012G116800 Gossypium raimondii HOM05D006146 ORTHO05D007924 1.1e-154 550.8 539 55.5
arahy.Tifrunner.gnm1.ann1.D29HQK Arachis hypogaea HOM05D006146 ORTHO05D007924 4.3e-154 548.9 600 56.5
ECA236G4528 Erigeron canadensis HOM05D006146 ORTHO05D007924 4.3e-154 548.9 552 55.1
Gohir.A04G093600 Gossypium hirsutum HOM05D006146 ORTHO05D007924 1.1e-152 544.3 539 55.1
Aqoxy4G02469 Aquilegia oxysepala HOM05D006146 ORTHO05D007924 1.4e-152 543.9 550 51.6
Actinidia11568 Actinidia chinensis HOM05D006146 ORTHO05D007924 2.3e-152 543.1 541 61.9
Medtr7g069480 Medicago truncatula HOM05D006146 ORTHO05D007924 2.3e-152 543.1 545 57.1
AL3G19990 Arabidopsis lyrata HOM05D006146 ORTHO05D007924 6.8e-152 541.6 580 54.8
Rhsim05G0219200 Rhododendron simsii HOM05D006146 ORTHO05D007924 1.2e-151 540.8 548 53.6
TWI53G1621 Tripterygium wilfordii HOM05D006146 ORTHO05D007924 4.4e-151 538.9 556 54.0
Glyma.07G152900 Glycine max HOM05D006146 ORTHO05D007924 5.8e-151 538.5 583 54.9
Ah.12g058880 Amaranthus hybridus HOM05D006146 ORTHO05D007924 1.3e-150 537.3 574 51.7
Psat3g126240 Pisum sativum HOM05D006146 ORTHO05D007924 2.9e-150 536.2 546 56.0
Lalb_Chr03g0043371 Lupinus albus HOM05D006146 ORTHO05D007924 3.8e-150 535.8 552 55.6
THA.LOC104816204 Tarenaya hassleriana HOM05D006146 ORTHO05D007924 6.4e-150 535.0 545 56.9
Eucgr.A00544 Eucalyptus grandis HOM05D006146 ORTHO05D007924 3.2e-149 532.7 584 55.8
AT3G08970 Arabidopsis thaliana HOM05D006146 ORTHO05D007924 4.1e-149 532.3 577 52.7
Thhalv10020374m.g Eutrema salsugineum HOM05D006146 ORTHO05D007924 4.1e-149 532.3 551 58.4
Eucgr.A00545 Eucalyptus grandis HOM05D006146 ORTHO05D007924 2.1e-148 530.0 541 53.4
Ca_07664_v3 Cicer arietinum L. HOM05D006146 ORTHO05D007924 3.5e-148 529.3 523 60.2
HanXRQChr12g0383181 Helianthus annuus HOM05D006146 ORTHO05D007924 3.5e-148 529.3 552 56.9
Lsat_1_v5_gn_8_100801 Lactuca sativa HOM05D006146 ORTHO05D007924 2.3e-147 526.6 556 52.3
ClCG10G022330 Citrullus lanatus HOM05D006146 ORTHO05D007924 5.1e-147 525.4 530 57.7
Aa31LG5G18940 Aethionema arabicum HOM05D006146 ORTHO05D007924 8.6e-147 524.6 538 58.7
Carub.0003s0810 Capsella rubella HOM05D006146 ORTHO05D007924 1.1e-146 524.2 581 52.2
AUR62010446 Chenopodium quinoa HOM05D006146 ORTHO05D007924 7.3e-146 521.5 537 59.8
Potri.016G120000 Populus trichocarpa HOM05D006146 ORTHO05D007924 7.3e-146 521.5 422 65.2
unitig_578.g15902 Utricularia gibba HOM05D003030 ORTHO05D003610 9.6e-146 521.2 545 54.5
C05p58910 Brassica napus HOM05D006146 ORTHO05D007924 1.4e-144 517.3 565 57.9
CARHR083310 Cardamine hirsuta HOM05D006146 ORTHO05D007924 1.8e-144 516.9 546 56.2
Sed0026013 Sechium edule HOM05D006146 ORTHO05D007924 3.1e-144 516.2 546 53.1
PSO384G0066 Papaver somniferum HOM05D006146 ORTHO05D007924 6.9e-144 515.0 566 51.9
BolC5t34544H Brassica oleracea HOM05D006146 ORTHO05D007924 2.0e-143 513.5 566 56.4
VMungo1383G3422 Vigna mungo HOM05D006146 ORTHO05D007924 2.0e-143 513.5 559 52.1
TPR.G35447 Trifolium pratense HOM05D006146 ORTHO05D007924 1.7e-142 510.4 550 56.0
GSVIVG01003939001 Vitis vinifera HOM05D006146 ORTHO05D007924 1.7e-142 510.4 384 65.9
Sp3g07390 Schrenkiella parvula HOM05D006146 ORTHO05D007924 2.2e-142 510.0 574 55.2
Phvul.008G095600 Phaseolus vulgaris HOM05D006146 ORTHO05D007924 6.4e-142 508.4 584 55.7
PSO339G2519 Papaver somniferum HOM05D006146 ORTHO05D007924 1.1e-141 507.7 566 51.6
BraA05t22771Z Brassica rapa HOM05D006146 ORTHO05D007924 4.2e-141 505.8 558 55.6
A05p39870 Brassica napus HOM05D006146 ORTHO05D007924 6.0e-140 501.9 564 56.7
Dinv13137 Davidia involucrata HOM05D006146 ORTHO05D007924 3.0e-139 499.6 516 52.7
MBI03_g05510_MAGBIO Magnolia biondii HOM05D006146 ORTHO05D007924 6.6e-139 498.4 532 52.4
PGR031G2778 Punica granatum HOM05D006146 ORTHO05D007924 4.3e-138 495.7 588 51.7
Zm00001eb396940 Zea mays HOM05D006146 ORTHO05D007924 1.3e-134 484.2 554 47.7
Gohir.D04G132900 Gossypium hirsutum HOM05D006146 ORTHO05D007924 3.2e-133 479.6 586 48.3
HPP92_025101 Vanilla planifolia HOM05D006146 ORTHO05D007924 8.7e-131 471.5 544 46.9
CDE06G0106 Ceratophyllum demersum HOM05D003030 ORTHO05D003610 4.3e-130 469.2 556 47.3
FAN05G4820 Fragaria x ananassa HOM05D006146 ORTHO05D007924 4.8e-129 465.7 564 49.1
Sc22g0002570 Simmondsia chinensis HOM05D006146 ORTHO05D007924 6.9e-128 461.8 429 57.3
DCAR_015389 Daucus carota HOM05D006146 ORTHO05D007924 6.4e-126 455.3 551 50.1
ATR0681G078 Amborella trichopoda HOM05D006146 ORTHO05D007924 3.5e-124 449.5 547 45.3
Glyma.16G098700 Glycine max HOM05D006146 ORTHO05D007924 6.7e-123 445.3 381 61.2
COL.COLO4_14502 Corchorus olitorius HOM05D006146 ORTHO05D007924 2.1e-121 440.3 545 47.7
Os03g0293000 Oryza sativa ssp. japonica HOM05D006146 ORTHO05D007924 4.8e-121 439.1 490 49.0
SHI12853 Sapria himalayana HOM05D006146 ORTHO05D007924 5.3e-120 435.6 529 47.3
CSS0039643 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 1.1e-109 401.4 509 48.1
BcaC05g29631 Brassica carinata HOM05D006146 ORTHO05D007924 1.4e-109 401.0 569 46.0
Sabra16G0115900 Salix brachista HOM05D006146 ORTHO05D007924 1.1e-104 384.8 529 48.2
Hma1.2p1_0362F.1_g136590 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 1.0e-102 378.3 276 68.5
Hma1.2p1_0362F.1_g136580 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 6.1e-100 369.0 289 65.4
SEGI_31782 Sequoiadendron giganteum HOM05D006146 ORTHO05D007924 3.3e-98 363.2 558 37.6
CSS0015893 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 1.4e-96 357.8 272 65.8
CSS0031746 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 3.3e-90 336.7 530 42.6
CSS0011042 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 8.5e-86 322.0 272 61.8
QL08p015836 Quercus lobata HOM05D006146 ORTHO05D007924 6.1e-84 315.8 320 54.7
CSS0030843 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 2.4e-80 303.9 437 44.4
Hund10973 Selenicereus undatus HOM05D006146 ORTHO05D007924 5.5e-77 292.7 340 49.1
FAN09G2516 Fragaria x ananassa HOM05D006146 ORTHO05D007924 2.4e-72 277.3 215 66.0
Cpa.g.sc120.50 Carica papaya HOM05D006146 ORTHO05D007924 1.2e-66 258.5 214 64.0
Hund10972 Selenicereus undatus HOM05D006146 ORTHO05D007924 2.8e-65 253.8 214 60.3
AagrBONN_evm.TU.Sc2ySwM_228.96 Anthoceros agrestis HOM05D006146 ORTHO05D007924 8.6e-62 242.3 377 35.0
Mapoly0184s0019 Marchantia polymorpha HOM05D006146 ORTHO05D007924 5.2e-59 233.0 574 29.6
SMO347G0184 Selaginella moellendorffii HOM05D006146 ORTHO05D007924 1.5e-58 231.5 529 34.8
Pp3c20_14730 Physcomitrium patens HOM05D006146 ORTHO05D007924 1.3e-57 228.4 583 29.0
Zm00001eb225170 Zea mays HOM05D006146 ORTHO05D007924 1.2e-42 178.7 162 58.0
Zm00001eb032720 Zea mays HOM05D006146 ORTHO05D007924 9.2e-32 142.5 173 48.0
Haze_20655 Corylus avellana HOM05D006146 ORTHO05D007924 3.9e-22 110.5 210 38.6
CBR_g38983 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-20 104.8 482 29.7
Thecc.05G011800 Theobroma cacao HOM05D006146 ORTHO05D007924 2.8e-20 104.4 79 63.3
QL07p034801 Quercus lobata HOM05D006146 ORTHO05D007924 4.5e-18 97.1 186 34.4
Rhsim01G0279400 Rhododendron simsii HOM05D000036 ORTHO05D005472 1.2e-15 89.0 74 52.7
Rhsim05G0215400 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.9e-14 84.0 71 50.7
Rhsim05G0219400 Rhododendron simsii HOM05D006146 ORTHO05D007924 4.6e-07 60.5 58 48.3


User provided reference genes

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