Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.9e-157 558.5 280 100.0
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.0e-134 482.6 249 96.4
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 6.4e-117 424.5 250 84.0
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 2.4e-116 422.5 256 84.0
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 4.6e-115 418.3 258 82.2
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 2.0e-102 376.3 257 77.0
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 4.5e-102 375.2 258 73.6
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 9.3e-100 367.5 246 74.8
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 1.2e-99 367.1 244 76.2
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 3.0e-98 362.5 246 74.4
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 5.7e-97 358.2 253 72.7
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 1.3e-96 357.1 256 71.1
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 1.6e-96 356.7 251 72.9
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 2.8e-96 355.9 253 73.1
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 3.7e-96 355.5 250 73.2
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 1.8e-95 353.2 258 73.6
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 3.1e-95 352.4 260 69.2
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 4.1e-95 352.1 250 75.6
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 4.1e-95 352.1 247 72.1
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 5.3e-95 351.7 250 71.6
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 9.0e-95 350.9 283 64.3
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 9.0e-95 350.9 250 72.0
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 3.4e-94 349.0 257 71.2
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 4.5e-94 348.6 254 71.3
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 7.7e-94 347.8 257 71.6
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 1.7e-93 346.7 248 72.2
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 2.9e-93 345.9 254 71.7
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 5.0e-93 345.1 259 70.3
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 8.5e-93 344.4 248 71.8
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 1.1e-92 344.0 257 68.9
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 1.9e-92 343.2 255 69.0
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 5.5e-92 341.7 262 69.1
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 7.2e-92 341.3 260 66.5
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 1.2e-91 340.5 255 69.4
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 1.6e-91 340.1 261 68.6
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 2.7e-91 339.3 255 68.2
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 4.6e-91 338.6 250 68.4
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 6.1e-91 338.2 255 68.6
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 6.1e-91 338.2 264 67.8
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 6.1e-91 338.2 202 84.2
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 7.9e-91 337.8 251 70.9
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.8e-90 336.7 246 69.9
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 1.8e-90 336.7 262 69.1
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 1.8e-90 336.7 251 68.1
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 1.8e-90 336.7 202 83.7
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 3.0e-90 335.9 264 67.0
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 3.0e-90 335.9 245 71.0
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 3.9e-90 335.5 256 68.0
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 5.1e-90 335.1 256 68.0
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 5.1e-90 335.1 256 68.0
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 8.8e-90 334.3 264 66.3
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 8.8e-90 334.3 246 69.9
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 1.5e-89 333.6 264 67.8
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 1.5e-89 333.6 264 65.9
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 1.5e-89 333.6 264 67.4
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 1.5e-89 333.6 264 65.9
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 2.0e-89 333.2 264 67.4
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 2.0e-89 333.2 264 67.4
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 2.0e-89 333.2 264 67.4
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 2.0e-89 333.2 264 65.9
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 2.5e-89 332.8 265 67.2
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 3.3e-89 332.4 245 69.0
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 4.3e-89 332.0 264 65.5
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 4.3e-89 332.0 264 65.5
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 7.4e-89 331.3 258 67.8
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 9.7e-89 330.9 286 63.3
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 1.3e-88 330.5 259 66.4
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 1.3e-88 330.5 245 69.0
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 1.3e-88 330.5 249 68.3
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.7e-88 330.1 258 65.9
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 1.7e-88 330.1 250 68.0
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 3.7e-88 328.9 264 65.9
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 8.2e-88 327.8 250 69.6
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 3.1e-87 325.9 248 64.5
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 4.1e-87 325.5 251 67.3
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 6.9e-87 324.7 243 65.4
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 6.9e-87 324.7 244 68.9
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 9.1e-87 324.3 250 68.8
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.5e-86 323.6 250 68.8
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.0e-86 323.2 253 66.4
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.0e-86 323.2 253 66.4
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 2.0e-86 323.2 253 66.4
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 2.0e-86 323.2 253 67.2
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 2.6e-86 322.8 237 66.2
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 3.4e-86 322.4 241 70.1
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 7.7e-86 321.2 246 64.2
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 1.0e-85 320.9 249 63.9
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 1.0e-85 320.9 244 68.4
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 1.7e-85 320.1 246 63.8
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 1.7e-85 320.1 243 64.6
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 1.7e-85 320.1 229 71.6
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 2.2e-85 319.7 251 65.3
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 2.2e-85 319.7 252 64.7
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 2.9e-85 319.3 274 59.5
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 5.0e-85 318.5 253 66.4
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 1.1e-84 317.4 251 64.9
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 1.1e-84 317.4 279 61.6
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.1e-84 317.4 248 64.1
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 2.5e-84 316.2 244 66.4
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.6e-83 312.4 250 64.0
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 4.7e-83 312.0 263 64.6
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.0e-82 310.8 248 64.5
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 1.8e-82 310.1 205 77.1
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 1.8e-82 310.1 249 65.5
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 3.3e-81 305.8 248 63.7
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 4.4e-81 305.4 252 61.5
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 4.8e-80 302.0 186 81.2
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 4.8e-80 302.0 186 80.1
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 9.4e-76 287.7 186 77.4
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 3.0e-74 282.7 245 58.0
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 3.9e-74 282.3 255 56.1
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 1.7e-72 276.9 186 71.5
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 7.0e-71 271.6 168 81.0
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 7.0e-71 271.6 200 69.5
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 9.1e-71 271.2 182 70.3
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 4.5e-70 268.9 251 53.0
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 6.5e-69 265.0 261 53.3
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 4.2e-68 262.3 261 52.1
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 3.0e-66 256.1 159 81.1
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.3e-64 250.8 205 65.4
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 5.4e-55 218.8 149 75.2
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 3.0e-50 203.0 137 74.5
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 4.9e-48 195.7 159 64.2
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 5.4e-47 192.2 251 42.6
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.7e-45 187.2 196 46.4
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 2.9e-45 186.4 197 46.7
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 2.6e-41 173.3 134 64.2
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 5.8e-41 172.2 288 36.8
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 1.1e-39 167.9 111 77.5
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.9e-39 167.2 150 56.7
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 2.4e-39 166.8 114 69.3
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 7.8e-38 161.8 113 71.7
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 8.6e-37 158.3 108 70.4
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 3.1e-34 149.8 272 33.8
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 1.5e-33 147.5 111 66.7
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.3e-32 144.4 103 68.0
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 2.8e-27 126.7 110 60.9
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 1.2e-22 111.3 84 67.9
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 1.1e-20 104.8 75 69.3
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 2.3e-13 80.5 67 58.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 2.3e-13 80.5 67 58.2
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 7.3e-12 75.5 220 26.4
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.3e-11 74.7 59 61.0
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 5.3e-10 69.3 39 79.5
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 5.8e-09 65.9 189 28.0


User provided reference genes

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