Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003611g0070 Nicotiana tabacum HOM05D004721 ORTHO05D005765 7.2e-164 580.5 288 100.0
Peaxi162Scf01112g00011 Petunia axillaris HOM05D004721 ORTHO05D005765 4.9e-88 328.6 266 61.7
TWI34G1838 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 5.2e-61 238.8 287 42.2
TWI77G0152 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 3.3e-60 236.1 275 43.6
TWI77G0224 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 3.3e-60 236.1 275 43.6
TWI77G0506 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 3.3e-60 236.1 275 43.6
TWI77G0992 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 3.3e-60 236.1 275 43.6
Nitab4.5_0015623g0010 Nicotiana tabacum HOM05D004721 ORTHO05D005765 2.8e-59 233.0 272 43.4
Nitab4.5_0005441g0050 Nicotiana tabacum HOM05D004721 ORTHO05D005765 1.3e-56 224.2 273 42.5
Peaxi162Scf01049g00011 Petunia axillaris HOM05D004721 ORTHO05D005765 1.1e-55 221.1 275 39.6
Manes.04G087050 Manihot esculenta HOM05D004721 ORTHO05D005765 1.4e-53 214.2 290 39.0
CiPaw.06G132800 Carya illinoinensis HOM05D004721 ORTHO05D005765 2.3e-53 213.4 289 39.8
MD05G1061200 Malus domestica HOM05D004721 ORTHO05D005765 2.0e-52 210.3 290 39.3
Gohir.A03G196800 Gossypium hirsutum HOM05D004721 ORTHO05D005765 7.5e-52 208.4 285 40.7
Gorai.005G246000 Gossypium raimondii HOM05D004721 ORTHO05D005765 1.7e-51 207.2 285 41.1
Lj9A377G93 Lonicera japonica HOM05D004721 ORTHO05D005765 1.7e-51 207.2 291 40.2
MD10G1068900 Malus domestica HOM05D004721 ORTHO05D005765 2.2e-51 206.8 272 41.2
QL11p045210 Quercus lobata HOM05D004721 ORTHO05D005765 2.8e-51 206.5 289 39.1
Potri.009G120600 Populus trichocarpa HOM05D004721 ORTHO05D005765 4.8e-51 205.7 289 38.8
Sabra09G0092900 Salix brachista HOM05D004721 ORTHO05D005765 4.8e-51 205.7 290 38.3
Eucgr.G01697 Eucalyptus grandis HOM05D004721 ORTHO05D005765 6.3e-51 205.3 268 39.9
Peaxi162Scf00016g00435 Petunia axillaris HOM05D004721 ORTHO05D005765 6.3e-51 205.3 279 37.6
TAR628G0727 Trochodendron aralioides HOM05D004721 ORTHO05D005765 6.3e-51 205.3 271 40.2
Aqoxy6G01195 Aquilegia oxysepala HOM05D004721 ORTHO05D005765 8.2e-51 204.9 270 39.6
AT4G39120 Arabidopsis thaliana HOM05D004721 ORTHO05D005765 1.1e-50 204.5 292 38.4
GSVIVG01023826001 Vitis vinifera HOM05D004721 ORTHO05D005765 1.4e-50 204.1 287 38.7
AL7G11060 Arabidopsis lyrata HOM05D004721 ORTHO05D005765 1.8e-50 203.8 292 38.4
Prupe.8G090900 Prunus persica HOM05D004721 ORTHO05D005765 1.8e-50 203.8 269 40.1
PSO339G6113 Papaver somniferum HOM05D004721 ORTHO05D005765 2.4e-50 203.4 268 39.2
Thhalv10025644m.g Eutrema salsugineum HOM05D004721 ORTHO05D005765 4.1e-50 202.6 287 37.6
HanXRQChr03g0069331 Helianthus annuus HOM05D004721 ORTHO05D005765 4.1e-50 202.6 273 39.6
HPP92_022533 Vanilla planifolia HOM05D004721 ORTHO05D005765 4.1e-50 202.6 266 39.5
arahy.Tifrunner.gnm1.ann1.IE0TZZ Arachis hypogaea HOM05D004721 ORTHO05D005765 5.3e-50 202.2 263 39.9
Gohir.D02G218100 Gossypium hirsutum HOM05D004721 ORTHO05D005765 5.3e-50 202.2 285 40.7
Sc08g0000660 Simmondsia chinensis HOM05D004721 ORTHO05D005765 5.3e-50 202.2 282 38.7
Lsat_1_v5_gn_9_107961 Lactuca sativa HOM05D004721 ORTHO05D005765 7.0e-50 201.8 268 38.8
arahy.Tifrunner.gnm1.ann1.VA1NMQ Arachis hypogaea HOM05D004721 ORTHO05D005765 9.1e-50 201.4 266 39.8
CANSAT11G2513 Cannabis sativa HOM05D004721 ORTHO05D005765 9.1e-50 201.4 266 39.1
Cpa.g.sc106.2 Carica papaya HOM05D004721 ORTHO05D005765 9.1e-50 201.4 276 40.2
Duzib052G1174 Durio zibethinus HOM05D004721 ORTHO05D005765 9.1e-50 201.4 284 39.4
Ciclev10028779m.g Citrus clementina HOM05D004721 ORTHO05D005765 1.2e-49 201.1 280 37.9
Glyma.06G009800 Glycine max HOM05D004721 ORTHO05D005765 1.2e-49 201.1 271 39.5
Thecc.02G080400 Theobroma cacao HOM05D004721 ORTHO05D005765 1.2e-49 201.1 285 38.2
CSS0049052 Camellia sinensis var. sinensis HOM05D004721 ORTHO05D005765 1.6e-49 200.7 291 39.2
Sp7g36700 Schrenkiella parvula HOM05D004721 ORTHO05D005765 2.0e-49 200.3 281 37.4
TAR628G0683 Trochodendron aralioides HOM05D004721 ORTHO05D005765 2.0e-49 200.3 287 37.6
arahy.Tifrunner.gnm1.ann1.0UP1AG Arachis hypogaea HOM05D004721 ORTHO05D005765 3.5e-49 199.5 263 39.5
Cfa005049 Carpinus fangiana HOM05D004721 ORTHO05D005765 3.5e-49 199.5 285 37.2
arahy.Tifrunner.gnm1.ann1.P63ZP0 Arachis hypogaea HOM05D004721 ORTHO05D005765 5.9e-49 198.7 266 39.1
Dinv23488 Davidia involucrata HOM05D004721 ORTHO05D005765 5.9e-49 198.7 286 38.5
CARHR247630 Cardamine hirsuta HOM05D004721 ORTHO05D005765 7.7e-49 198.4 279 36.9
Lj5A193T104 Lonicera japonica HOM05D004721 ORTHO05D005765 1.3e-48 197.6 287 37.3
Nitab4.5_0005796g0050 Nicotiana tabacum HOM05D004721 ORTHO05D005765 1.3e-48 197.6 270 37.0
Zm00001eb333360 Zea mays HOM05D004721 ORTHO05D005765 1.3e-48 197.6 263 39.5
Actinidia00549 Actinidia chinensis HOM05D004721 ORTHO05D005765 1.7e-48 197.2 290 38.3
CSS0047334 Camellia sinensis var. sinensis HOM05D004721 ORTHO05D005765 1.7e-48 197.2 291 38.8
RcHm_v2.0_Chr6g0265981 Rosa chinensis HOM05D004721 ORTHO05D005765 1.7e-48 197.2 273 39.2
Aa31LG6G16140 Aethionema arabicum HOM05D004721 ORTHO05D005765 2.9e-48 196.4 272 37.1
Lj1g0012947 Lotus japonicus HOM05D004721 ORTHO05D005765 2.9e-48 196.4 263 40.3
Nn5g29707 Nelumbo nucifera HOM05D004721 ORTHO05D005765 2.9e-48 196.4 288 38.5
Atru.chr5.3082 Acer truncatum HOM05D004721 ORTHO05D005765 3.8e-48 196.1 284 37.7
BcaB03g12244 Brassica carinata HOM05D004721 ORTHO05D005765 3.8e-48 196.1 279 37.3
Haze_02333 Corylus avellana HOM05D004721 ORTHO05D005765 3.8e-48 196.1 279 37.6
Lalb_Chr08g0246691 Lupinus albus HOM05D004721 ORTHO05D005765 3.8e-48 196.1 268 38.4
vmacro02078 Vaccinium macrocarpon HOM05D004721 ORTHO05D005765 3.8e-48 196.1 289 39.4
BraA08t34333Z Brassica rapa HOM05D004721 ORTHO05D005765 5.0e-48 195.7 270 38.1
Os07g0191000 Oryza sativa ssp. japonica HOM05D004721 ORTHO05D005765 5.0e-48 195.7 264 39.4
TPR.G32188 Trifolium pratense HOM05D004721 ORTHO05D005765 6.5e-48 195.3 263 39.5
TWI31G1285 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 6.5e-48 195.3 292 36.0
Carub.0007s0100 Capsella rubella HOM05D004721 ORTHO05D005765 8.5e-48 194.9 273 37.7
FvH4_2g09630 Fragaria vesca HOM05D004721 ORTHO05D005765 8.5e-48 194.9 271 38.7
Glyma.04G009800 Glycine max HOM05D004721 ORTHO05D005765 8.5e-48 194.9 268 38.4
CAN.G1544.7 Capsicum annuum HOM05D004721 ORTHO05D005765 1.9e-47 193.7 273 35.9
Migut.B00208 Erythranthe guttata HOM05D004721 ORTHO05D005765 1.9e-47 193.7 295 36.3
FAN15G0894 Fragaria x ananassa HOM05D004721 ORTHO05D005765 1.9e-47 193.7 289 37.4
FAN24G2181 Fragaria x ananassa HOM05D004721 ORTHO05D005765 1.9e-47 193.7 271 38.7
MBI10_g00756_MAGBIO Magnolia biondii HOM05D004721 ORTHO05D005765 1.9e-47 193.7 288 37.2
SalBow6G3984 Salvia bowleyana HOM05D004721 ORTHO05D005765 2.5e-47 193.4 267 36.0
VMungo1309G2240 Vigna mungo HOM05D004721 ORTHO05D005765 2.5e-47 193.4 268 38.1
Nitab4.5_0000632g0120 Nicotiana tabacum HOM05D004721 ORTHO05D005765 3.2e-47 193.0 219 42.9
Oeu020727.1 Olea europaea HOM05D004721 ORTHO05D005765 3.2e-47 193.0 272 37.9
Sopen01g052120 Solanum pennellii HOM05D004721 ORTHO05D005765 3.2e-47 193.0 270 37.0
PGSC0003DMG400030950 Solanum tuberosum HOM05D004721 ORTHO05D005765 4.2e-47 192.6 270 36.7
BcaC01g00283 Brassica carinata HOM05D004721 ORTHO05D005765 5.5e-47 192.2 281 36.3
C03p77610 Brassica napus HOM05D004721 ORTHO05D005765 5.5e-47 192.2 281 36.3
BolC3t20019H Brassica oleracea HOM05D004721 ORTHO05D005765 5.5e-47 192.2 281 36.3
ClCG11G004130 Citrullus lanatus HOM05D004721 ORTHO05D005765 5.5e-47 192.2 288 37.2
THA.LOC104807751 Tarenaya hassleriana HOM05D004721 ORTHO05D005765 5.5e-47 192.2 274 37.2
Psat5g005400 Pisum sativum HOM05D004721 ORTHO05D005765 7.2e-47 191.8 271 37.6
Cc02_g17240 Coffea canephora HOM05D004721 ORTHO05D005765 9.4e-47 191.4 285 37.9
ECA240G1659 Erigeron canadensis HOM05D004721 ORTHO05D005765 9.4e-47 191.4 283 36.0
Hund00240 Selenicereus undatus HOM05D004721 ORTHO05D005765 9.4e-47 191.4 288 36.5
SGA_v2.0_scaffold32G13194 Striga asiatica HOM05D004721 ORTHO05D005765 9.4e-47 191.4 286 36.0
Sed0009940 Sechium edule HOM05D004721 ORTHO05D005765 1.2e-46 191.0 273 37.0
EL10Ac9g21691 Beta vulgaris HOM05D004721 ORTHO05D005765 1.6e-46 190.7 269 38.7
A08p23810 Brassica napus HOM05D004721 ORTHO05D005765 1.6e-46 190.7 270 37.0
Phvul.009G005100 Phaseolus vulgaris HOM05D004721 ORTHO05D005765 1.6e-46 190.7 268 36.9
Solyc01g109930.4 Solanum lycopersicum HOM05D004721 ORTHO05D005765 2.7e-46 189.9 270 36.7
TWI75G0248 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 2.7e-46 189.9 286 36.7
ATR1158G041 Amborella trichopoda HOM05D004721 ORTHO05D005765 3.6e-46 189.5 259 38.2
CDE07G1572 Ceratophyllum demersum HOM05D004721 ORTHO05D005765 3.6e-46 189.5 287 35.5
Rhsim11G0180400 Rhododendron simsii HOM05D004721 ORTHO05D005765 1.0e-45 188.0 284 36.3
unitig_37.g12822 Utricularia gibba HOM05D004721 ORTHO05D005765 1.0e-45 188.0 278 36.3
CsaV3_2G015040 Cucumis sativus L. HOM05D004721 ORTHO05D005765 1.4e-45 187.6 269 38.3
Oeu046144.1 Olea europaea HOM05D004721 ORTHO05D005765 2.3e-45 186.8 269 35.7
AUR62011286 Chenopodium quinoa HOM05D004721 ORTHO05D005765 3.0e-45 186.4 288 36.5
MELO3C023324.2 Cucumis melo HOM05D004721 ORTHO05D005765 5.2e-45 185.7 289 37.7
Medtr3g117220 Medicago truncatula HOM05D004721 ORTHO05D005765 2.0e-44 183.7 244 39.3
Nn5g28946 Nelumbo nucifera HOM05D004721 ORTHO05D005765 1.3e-43 181.0 269 37.5
DCAR_030585 Daucus carota HOM05D004721 ORTHO05D005765 2.8e-43 179.9 273 34.4
Ah.01g019120 Amaranthus hybridus HOM05D004721 ORTHO05D005765 3.7e-43 179.5 288 34.4
DCAR_023012 Daucus carota HOM05D004721 ORTHO05D005765 4.1e-42 176.0 251 36.7
Dinv42038 Davidia involucrata HOM05D004721 ORTHO05D005765 4.1e-42 176.0 269 37.2
SMO356G0699 Selaginella moellendorffii HOM05D004721 ORTHO05D005765 1.7e-40 170.6 277 33.6
vmacro17459 Vaccinium macrocarpon HOM05D004721 ORTHO05D005765 8.5e-40 168.3 357 30.8
Pp3c14_5280 Physcomitrium patens HOM05D004721 ORTHO05D005765 4.2e-39 166.0 265 34.3
AagrBONN_evm.TU.Sc2ySwM_117.356 Anthoceros agrestis HOM05D004721 ORTHO05D005765 5.5e-39 165.6 282 35.1
EL10Ac4g09012 Beta vulgaris HOM05D004721 ORTHO05D005765 4.7e-38 162.5 300 30.7
AUR62024760 Chenopodium quinoa HOM05D004721 ORTHO05D005765 1.0e-37 161.4 266 33.5
Nitab4.5_0003234g0080 Nicotiana tabacum HOM05D004721 ORTHO05D005765 1.0e-37 161.4 270 34.1
Mapoly0009s0236 Marchantia polymorpha HOM05D004721 ORTHO05D005765 7.5e-36 155.2 258 35.7
Cre17.g723550 Chlamydomonas reinhardtii HOM05D004721 ORTHO05D005765 1.3e-35 154.5 267 31.8
AUR62016772 Chenopodium quinoa HOM05D004721 ORTHO05D005765 8.3e-35 151.8 278 32.7
PGR042G3536 Punica granatum HOM05D004721 ORTHO05D005765 9.2e-34 148.3 221 36.7
MCO05G057 Micromonas commoda HOM05D004721 ORTHO05D005765 2.7e-33 146.7 260 32.3
PRCOL_00005559 Prasinoderma coloniale HOM05D004721 ORTHO05D005765 5.9e-33 145.6 257 32.7
Nitab4.5_0002361g0020 Nicotiana tabacum HOM05D004721 ORTHO05D005765 6.6e-32 142.1 271 30.3
Pp3c7_6620 Physcomitrium patens HOM05D004721 ORTHO05D005765 3.3e-31 139.8 277 31.4
Sopen01g041380 Solanum pennellii HOM05D004721 ORTHO05D005765 3.6e-30 136.3 240 34.2
Cfa005051 Carpinus fangiana HOM05D004721 ORTHO05D005765 2.3e-29 133.7 281 30.6
Pp3c11_19670 Physcomitrium patens HOM05D004721 ORTHO05D005765 3.0e-29 133.3 272 28.3
CBR_g50245 Chara braunii HOM05D004721 ORTHO05D005765 3.4e-28 129.8 285 30.5
PGSC0003DMG400022510 Solanum tuberosum HOM05D004721 ORTHO05D005765 9.2e-26 121.7 117 48.7
AUR62038677 Chenopodium quinoa HOM05D004721 ORTHO05D005765 1.0e-24 118.2 244 27.5
Cfa005052 Carpinus fangiana HOM05D004721 ORTHO05D005765 1.7e-24 117.5 173 36.4
SHI05562 Sapria himalayana HOM05D004721 ORTHO05D005765 5.2e-21 105.9 265 28.3
AUR62040957 Chenopodium quinoa HOM05D004721 ORTHO05D005765 2.0e-20 104.0 226 28.3
A01p00240 Brassica napus HOM05D004721 ORTHO05D005765 2.9e-19 100.1 139 38.1
BraA01t00031Z Brassica rapa HOM05D004721 ORTHO05D005765 2.9e-19 100.1 139 38.1
Ca_28938_v3 Cicer arietinum L. HOM05D004721 ORTHO05D005765 1.2e-17 94.7 203 30.0
Haze_27473 Corylus avellana HOM05D004721 ORTHO05D005765 1.7e-16 90.9 265 27.5
Cc02_g17260 Coffea canephora HOM05D004721 ORTHO05D005765 1.2e-14 84.7 137 36.5
Actinidia33624 Actinidia chinensis HOM05D004721 ORTHO05D005765 9.2e-10 68.6 93 35.5
Os09g0322900 Oryza sativa ssp. japonica HOM05D004721 ORTHO05D005765 1.0e-08 65.1 70 45.7
CSS0042553 Camellia sinensis var. sinensis HOM05D004721 ORTHO05D005765 8.6e-08 62.0 103 33.0
C01p00350 Brassica napus HOM05D004721 ORTHO05D005765 4.7e-06 56.2 90 34.4
BolC1t00041H Brassica oleracea HOM05D004721 ORTHO05D005765 4.7e-06 56.2 90 34.4
CAN.G134.160 Capsicum annuum HOM05D004721 ORTHO05D000001 4.7e-06 56.2 89 29.2


User provided reference genes

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