Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 4.1e-159 564.7 290 100.0
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.4e-135 485.7 318 82.4
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 1.5e-129 466.5 298 83.6
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 8.7e-125 450.7 299 79.3
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 1.8e-117 426.4 300 75.7
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.9e-116 422.9 300 74.3
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.7e-107 392.1 302 71.2
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 1.1e-106 390.6 291 72.5
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 3.1e-106 389.0 299 69.2
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 4.1e-106 388.7 299 68.9
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 5.9e-105 384.8 299 68.9
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 1.0e-93 347.4 302 61.9
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 4.4e-92 342.0 244 69.3
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 7.4e-92 341.3 290 62.8
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 1.3e-91 340.5 303 61.1
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 2.4e-90 336.3 301 61.1
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 3.4e-89 332.4 283 61.8
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 5.9e-89 331.6 277 63.5
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 2.9e-88 329.3 253 66.8
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 3.8e-88 328.9 311 58.5
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 3.8e-88 328.9 249 65.9
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 6.5e-88 328.2 277 61.7
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 8.5e-88 327.8 259 64.5
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 8.5e-88 327.8 280 62.1
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 1.9e-87 326.6 274 60.6
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.5e-87 326.2 240 67.5
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.5e-87 326.2 240 67.5
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 2.5e-87 326.2 240 67.5
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 3.2e-87 325.9 255 65.5
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 5.5e-87 325.1 274 63.1
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 5.5e-87 325.1 277 62.5
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 1.6e-86 323.6 279 60.9
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 1.6e-86 323.6 273 63.0
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 2.1e-86 323.2 236 66.9
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 2.1e-86 323.2 270 61.9
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.7e-86 322.8 293 60.4
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 3.6e-86 322.4 290 59.3
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 7.9e-86 321.2 279 60.2
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 1.0e-85 320.9 244 65.6
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 1.4e-85 320.5 244 66.0
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.4e-85 320.5 282 58.5
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 1.4e-85 320.5 279 60.2
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 1.8e-85 320.1 241 66.8
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 1.8e-85 320.1 288 56.9
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 1.8e-85 320.1 278 59.7
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 3.0e-85 319.3 288 60.1
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 3.0e-85 319.3 288 60.1
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 6.7e-85 318.2 281 60.5
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 1.1e-84 317.4 296 57.8
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 1.5e-84 317.0 245 64.5
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 2.0e-84 316.6 282 59.9
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 2.0e-84 316.6 275 61.8
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.3e-84 315.8 254 63.0
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 4.4e-84 315.5 283 59.0
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 5.7e-84 315.1 295 58.3
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 5.7e-84 315.1 245 63.7
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 7.4e-84 314.7 279 60.2
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 9.7e-84 314.3 254 62.2
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 9.7e-84 314.3 270 60.7
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.3e-83 313.9 289 60.6
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 2.2e-83 313.2 269 59.9
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 4.8e-83 312.0 296 58.1
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 4.8e-83 312.0 275 60.0
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 4.8e-83 312.0 261 61.3
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 6.3e-83 311.6 223 68.6
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 6.3e-83 311.6 269 61.0
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 8.2e-83 311.2 293 55.6
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 8.2e-83 311.2 287 58.2
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.1e-82 310.8 240 65.4
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 1.1e-82 310.8 287 58.2
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.4e-82 310.5 273 59.7
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 1.4e-82 310.5 286 58.0
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 1.4e-82 310.5 286 58.0
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 1.4e-82 310.5 250 63.2
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 1.4e-82 310.5 280 58.6
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.8e-82 310.1 283 57.2
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 1.8e-82 310.1 286 57.3
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 2.4e-82 309.7 278 59.0
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 2.4e-82 309.7 287 57.1
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 2.4e-82 309.7 251 62.5
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 2.4e-82 309.7 311 57.2
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 5.3e-82 308.5 273 60.8
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 5.3e-82 308.5 269 60.6
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 5.3e-82 308.5 273 60.1
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 9.1e-82 307.8 292 57.2
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 9.1e-82 307.8 231 65.8
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.2e-81 307.4 291 55.7
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 1.6e-81 307.0 287 57.8
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 2.0e-81 306.6 284 58.1
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 2.0e-81 306.6 282 60.3
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 2.6e-81 306.2 277 57.8
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 3.5e-81 305.8 287 56.4
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 5.9e-81 305.1 293 61.8
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 1.0e-80 304.3 303 55.1
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 1.3e-80 303.9 267 57.3
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.3e-80 303.9 219 71.2
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.7e-80 303.5 242 63.2
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 2.9e-80 302.8 286 56.6
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 6.5e-80 301.6 244 68.4
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 8.5e-80 301.2 291 54.3
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 8.5e-80 301.2 291 54.3
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 8.5e-80 301.2 223 66.4
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.1e-79 300.8 271 56.1
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 1.1e-79 300.8 257 62.3
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.1e-79 300.8 254 58.7
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 1.5e-79 300.4 257 58.4
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 2.5e-79 299.7 288 55.2
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 2.5e-79 299.7 243 62.6
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 4.2e-79 298.9 291 54.3
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 2.1e-78 296.6 269 56.5
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 3.0e-77 292.7 232 63.4
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 6.7e-77 291.6 252 59.1
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.2e-76 290.8 273 56.8
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 2.6e-76 289.7 230 61.3
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 5.7e-76 288.5 277 54.5
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 4.5e-73 278.9 338 47.0
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 5.9e-73 278.5 268 55.2
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 2.9e-72 276.2 292 53.4
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 6.5e-72 275.0 234 59.0
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 1.9e-71 273.5 234 57.3
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 5.5e-71 271.9 254 57.1
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 7.2e-71 271.6 272 56.2
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 1.6e-70 270.4 232 57.3
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 6.1e-70 268.5 284 53.9
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 5.2e-69 265.4 238 59.2
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 5.2e-69 265.4 229 59.8
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.2e-68 264.2 260 51.9
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 3.4e-68 262.7 283 52.3
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.0e-64 251.1 313 47.0
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 2.2e-64 250.0 258 52.3
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.9e-64 249.6 313 47.0
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 2.1e-62 243.4 263 53.6
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 3.3e-55 219.5 221 52.5
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 5.6e-55 218.8 270 44.1
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 2.1e-54 216.9 220 49.5
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 2.3e-53 213.4 304 38.5
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.2e-52 211.1 439 34.4
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 9.8e-52 208.0 173 60.1
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 2.9e-51 206.5 229 48.9
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 3.0e-48 196.4 248 43.5
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 5.6e-47 192.2 231 46.3
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 1.1e-42 177.9 127 66.1
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 1.1e-39 167.9 169 54.4
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 1.1e-39 167.9 130 63.8
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 6.8e-37 158.7 183 47.5
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 3.7e-35 152.9 113 62.8
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 8.6e-24 115.2 135 50.4
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 1.4e-21 107.8 93 50.5
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 2.9e-19 100.1 76 60.5
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 6.4e-19 99.0 74 68.9
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 1.1e-18 98.2 73 65.8
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 4.8e-14 82.8 85 47.1
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 7.6e-12 75.5 213 31.9
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 1.7e-11 74.3 59 62.7
FAN08G1341 Fragaria x ananassa HOM05D002234 ORTHO05D002254 7.1e-10 68.9 193 30.6
FvH4_5g22910 Fragaria vesca HOM05D002234 ORTHO05D002254 2.1e-09 67.4 193 30.1
ECA246G1777 Erigeron canadensis HOM05D002234 ORTHO05D002254 2.7e-09 67.0 198 28.3
FAN18G2745 Fragaria x ananassa HOM05D002234 ORTHO05D002254 6.0e-09 65.9 193 29.5
FAN18G4293 Fragaria x ananassa HOM05D002234 ORTHO05D002254 6.0e-09 65.9 193 29.5
CANSAT21G1663 Cannabis sativa HOM05D002234 ORTHO05D002254 7.9e-09 65.5 193 29.0
FAN04G0881 Fragaria x ananassa HOM05D002234 ORTHO05D002254 7.9e-09 65.5 194 29.9
CSS0050044 Camellia sinensis var. sinensis HOM05D002234 ORTHO05D002254 2.3e-08 63.9 190 31.1
Gohir.A05G174100 Gossypium hirsutum HOM05D002234 ORTHO05D002254 3.0e-08 63.5 223 28.3
Gohir.D05G177100 Gossypium hirsutum HOM05D002234 ORTHO05D002254 3.0e-08 63.5 223 28.3
Gorai.009G182500 Gossypium raimondii HOM05D002234 ORTHO05D002254 3.0e-08 63.5 223 28.3
Hund11194 Selenicereus undatus HOM05D002234 ORTHO05D002254 5.1e-08 62.8 199 29.6
Manes.16G002400 Manihot esculenta HOM05D002234 ORTHO05D002254 1.1e-07 61.6 195 27.7
Gorai.006G217700 Gossypium raimondii HOM05D002234 ORTHO05D002254 1.5e-07 61.2 190 26.8
Thecc.03G308900 Theobroma cacao HOM05D002234 ORTHO05D002254 5.6e-07 59.3 197 27.9
Glyma.15G112500 Glycine max HOM05D002234 ORTHO05D002254 9.6e-07 58.5 293 24.6
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 1.6e-06 57.8 42 61.9
Hund14366 Selenicereus undatus HOM05D002234 ORTHO05D002254 1.6e-06 57.8 193 27.5
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 1.6e-06 57.8 41 70.7
Aqoxy3G02205 Aquilegia oxysepala HOM05D002234 ORTHO05D002254 2.1e-06 57.4 194 27.8
TAR623G1365 Trochodendron aralioides HOM05D004474 ORTHO05D414940 2.1e-06 57.4 40 72.5
Zm00001eb024700 Zea mays HOM05D002234 ORTHO05D002254 6.2e-06 55.8 195 25.1
vmacro14194 Vaccinium macrocarpon HOM05D002234 ORTHO05D002254 8.1e-06 55.5 192 27.6


User provided reference genes

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