Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 7.6e-204 714.1 525 100.0
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.4e-188 662.1 526 92.2
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 1.6e-153 547.0 533 76.4
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 1.3e-134 484.2 535 64.3
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 3.0e-131 473.0 535 63.6
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 2.6e-127 459.9 538 63.4
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 3.4e-127 459.5 538 62.8
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 1.1e-114 417.9 547 61.4
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 3.8e-110 402.9 549 59.4
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 1.1e-109 401.4 548 59.1
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 1.6e-108 397.5 542 66.1
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 4.3e-106 389.4 575 55.5
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 4.3e-106 389.4 544 58.3
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 4.3e-106 389.4 546 59.9
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 5.6e-106 389.0 545 55.0
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 7.3e-106 388.7 545 57.8
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 2.8e-105 386.7 538 58.9
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 3.6e-105 386.3 547 56.5
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 1.1e-104 384.8 543 61.9
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.1e-104 384.8 543 59.1
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 1.4e-104 384.4 590 54.4
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.8e-104 384.0 547 57.0
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 6.9e-104 382.1 544 64.3
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 2.0e-103 380.6 549 56.5
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 7.6e-103 378.6 540 59.3
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 4.9e-102 375.9 553 61.1
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 8.4e-102 375.2 577 56.7
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 1.1e-101 374.8 544 58.8
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.4e-101 374.4 577 56.7
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 1.9e-101 374.0 545 58.9
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 4.2e-101 372.9 550 57.6
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 4.2e-101 372.9 550 58.9
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 5.4e-101 372.5 545 58.3
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 1.2e-100 371.3 551 57.7
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 1.6e-100 370.9 544 58.3
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 2.7e-100 370.2 557 59.1
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 3.5e-100 369.8 543 63.0
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 3.5e-100 369.8 544 53.1
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 6.0e-100 369.0 555 57.1
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 6.0e-100 369.0 535 59.6
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 6.0e-100 369.0 552 62.9
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 7.9e-100 368.6 545 64.2
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 1.0e-99 368.2 543 58.7
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 3.0e-99 366.7 550 55.1
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 5.1e-99 365.9 535 55.9
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 6.7e-99 365.5 536 61.0
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 6.7e-99 365.5 536 61.0
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 1.1e-98 364.8 539 58.6
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 5.6e-98 362.5 545 56.1
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 5.6e-98 362.5 558 54.1
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 7.4e-98 362.1 547 61.1
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 7.4e-98 362.1 548 57.7
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 1.3e-97 361.3 544 58.8
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 1.3e-97 361.3 545 55.6
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 8.1e-97 358.6 582 47.9
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.8e-96 357.5 551 57.0
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 5.3e-96 355.9 551 58.1
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 5.3e-96 355.9 540 50.2
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 2.0e-95 354.0 554 55.2
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 7.6e-95 352.1 549 63.4
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 1.3e-94 351.3 546 57.9
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 1.7e-94 350.9 575 59.3
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 3.8e-94 349.7 554 57.4
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 6.4e-94 349.0 567 53.8
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 1.1e-93 348.2 547 57.4
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 1.9e-93 347.4 551 56.4
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 9.3e-93 345.1 560 54.1
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 1.2e-92 344.7 543 56.0
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 1.6e-92 344.4 518 60.0
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 2.7e-92 343.6 567 50.8
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 1.3e-91 341.3 556 52.2
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 8.7e-91 338.6 545 57.4
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 4.3e-90 336.3 576 58.3
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 1.6e-89 334.3 553 53.3
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 2.1e-89 334.0 545 53.2
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 6.9e-88 328.9 545 55.2
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 5.8e-87 325.9 545 57.6
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 7.6e-87 325.5 549 58.5
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 7.6e-87 325.5 543 61.5
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 1.3e-86 324.7 545 57.4
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 6.5e-86 322.4 533 55.3
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.4e-85 321.2 545 56.5
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.4e-85 321.2 577 47.3
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 2.5e-85 320.5 546 53.8
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 9.3e-85 318.5 543 54.0
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 2.3e-83 313.9 545 54.3
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 3.3e-82 310.1 558 56.8
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 4.8e-81 306.2 596 50.8
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 4.8e-81 306.2 542 55.7
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 5.3e-80 302.8 550 56.2
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 1.2e-79 301.6 556 54.3
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 6.5e-78 295.8 557 52.8
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 1.4e-77 294.7 559 49.0
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 1.4e-77 294.7 540 58.5
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 5.5e-77 292.7 555 54.4
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 3.6e-76 290.0 557 50.3
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 6.1e-76 289.3 549 52.1
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.8e-75 287.7 555 51.9
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 3.9e-75 286.6 484 57.0
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 8.7e-75 285.4 538 50.0
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 1.1e-74 285.0 538 53.5
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 7.4e-74 282.3 555 50.3
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 3.7e-73 280.0 558 49.6
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 1.1e-72 278.5 588 52.0
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 1.4e-72 278.1 586 46.8
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 3.1e-72 276.9 557 47.9
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 6.9e-72 275.8 186 80.6
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 4.2e-69 266.5 572 46.9
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.2e-68 265.0 167 81.4
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.2e-68 265.0 164 82.9
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 2.1e-68 264.2 569 47.6
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 2.3e-67 260.8 186 73.7
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 9.7e-66 255.4 467 52.5
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 1.3e-65 255.0 384 46.4
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 1.2e-63 248.4 456 53.3
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 1.3e-62 245.0 594 49.0
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 1.9e-61 241.1 154 81.2
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 6.3e-57 226.1 500 48.2
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 4.5e-55 219.9 173 67.1
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.8e-54 216.9 478 53.6
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 6.5e-54 216.1 543 44.6
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 1.7e-49 201.4 165 69.1
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 1.8e-48 198.0 522 38.7
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 7.2e-45 186.0 114 85.1
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 4.4e-42 176.8 437 47.8
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 1.3e-38 165.2 283 54.4
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 2.2e-33 147.9 122 67.2
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 1.9e-29 134.8 109 72.5
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 1.6e-28 131.7 243 52.3
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 1.4e-27 128.6 109 67.0
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 1.8e-27 128.3 104 71.2
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.5e-26 125.2 121 63.6
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.0e-26 124.8 128 58.6
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 7.5e-26 122.9 74 81.1
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 4.9e-25 120.2 506 41.7
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 3.2e-24 117.5 81 67.9
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 4.1e-24 117.1 106 68.9
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 1.3e-17 95.5 147 41.5
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 4.1e-16 90.5 96 59.4
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.9e-14 84.0 64 67.2
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 2.8e-12 77.8 103 49.5
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 4.7e-12 77.0 73 67.1
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 4.7e-12 77.0 73 67.1
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.4e-11 75.5 46 82.6
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 8.9e-11 72.8 110 49.1
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 1.2e-10 72.4 75 58.7
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 9.9e-10 69.3 86 50.0
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 1.4e-08 65.5 58 63.8
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.6e-07 62.0 110 68.2
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 3.5e-07 60.8 158 34.2


User provided reference genes

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