Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003577g0010 Nicotiana tabacum HOM05D006566 ORTHO05D004366 3.2e-125 451.8 240 100.0
Nitab4.5_0000026g0410 Nicotiana tabacum HOM05D006566 ORTHO05D004366 2.9e-118 428.7 240 95.8
Solyc12g027740.3 Solanum lycopersicum HOM05D006566 ORTHO05D004366 1.0e-83 313.9 313 61.3
CAN.G1932.4 Capsicum annuum HOM05D006566 ORTHO05D004366 3.1e-83 312.4 361 56.0
Sopen12g012820 Solanum pennellii HOM05D006566 ORTHO05D004366 5.8e-82 308.1 345 56.8
GSVIVG01007834001 Vitis vinifera HOM05D006566 ORTHO05D004366 2.7e-71 272.7 284 58.5
QL10p013685 Quercus lobata HOM05D006566 ORTHO05D004366 4.0e-67 258.8 318 52.5
Actinidia34964 Actinidia chinensis HOM05D006566 ORTHO05D004366 6.4e-65 251.5 337 50.1
MSTRG.23070 Avicennia marina HOM05D006566 ORTHO05D004366 1.1e-64 250.8 354 48.6
Manes.06G099800 Manihot esculenta HOM05D006566 ORTHO05D004366 1.7e-62 243.4 352 47.2
Atru.chr9.2391 Acer truncatum HOM05D006566 ORTHO05D004366 3.0e-62 242.7 331 47.1
Sabra15G0094200 Salix brachista HOM05D006566 ORTHO05D004366 1.5e-61 240.4 340 47.4
Lsat_1_v5_gn_5_18061 Lactuca sativa HOM05D006566 ORTHO05D004366 1.9e-61 240.0 348 47.7
CSS0042495 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 5.6e-61 238.4 343 47.2
SGA_v2.0_scaffold56G20079 Striga asiatica HOM05D006566 ORTHO05D004366 5.6e-61 238.4 333 48.3
Actinidia19077 Actinidia chinensis HOM05D006566 ORTHO05D004366 9.6e-61 237.7 299 52.2
COL.COLO4_21450 Corchorus olitorius HOM05D006566 ORTHO05D004366 9.6e-61 237.7 315 49.8
Potri.015G070100 Populus trichocarpa HOM05D006566 ORTHO05D004366 1.2e-60 237.3 341 46.9
vmacro16583 Vaccinium macrocarpon HOM05D006566 ORTHO05D004366 1.2e-60 237.3 326 50.3
Nn3g17040 Nelumbo nucifera HOM05D006566 ORTHO05D004366 6.2e-60 235.0 372 44.1
Sed0021978 Sechium edule HOM05D006566 ORTHO05D004366 1.4e-59 233.8 354 45.5
CiPaw.12G022600 Carya illinoinensis HOM05D006566 ORTHO05D004366 2.4e-59 233.0 381 42.8
Migut.I00099 Erythranthe guttata HOM05D006566 ORTHO05D004366 8.9e-59 231.1 332 47.6
CsaV3_1G008150 Cucumis sativus L. HOM05D006566 ORTHO05D004366 2.0e-58 229.9 365 44.1
ECA246G4585 Erigeron canadensis HOM05D006566 ORTHO05D004366 2.0e-58 229.9 317 47.9
TAR374G0618 Trochodendron aralioides HOM05D006566 ORTHO05D004366 4.4e-58 228.8 361 43.8
CANSAT80G0898 Cannabis sativa HOM05D006566 ORTHO05D004366 5.8e-58 228.4 363 44.4
Cc04_g16230 Coffea canephora HOM05D006566 ORTHO05D004366 7.6e-58 228.0 350 45.1
Eucgr.K02884 Eucalyptus grandis HOM05D006566 ORTHO05D004366 8.4e-57 224.6 366 42.3
HanXRQChr14g0438811 Helianthus annuus HOM05D006566 ORTHO05D004366 1.1e-56 224.2 354 44.4
PGR044G1407 Punica granatum HOM05D006566 ORTHO05D004366 1.9e-56 223.4 340 46.2
unitig_749.g13457 Utricularia gibba HOM05D006566 ORTHO05D004366 7.1e-56 221.5 334 46.4
RcHm_v2.0_Chr7g0179841 Rosa chinensis HOM05D006566 ORTHO05D004366 2.1e-55 219.9 348 45.7
Aqoxy3G00871 Aquilegia oxysepala HOM05D006566 ORTHO05D004366 3.5e-55 219.2 339 45.1
BcaC07g39293 Brassica carinata HOM05D006566 ORTHO05D004366 1.7e-54 216.9 303 48.2
Cpa.g.sc35.28 Carica papaya HOM05D006566 ORTHO05D004366 1.7e-54 216.9 336 46.1
Thecc.03G002700 Theobroma cacao HOM05D006566 ORTHO05D004366 1.7e-54 216.9 351 44.4
MD06G1182300 Malus domestica HOM05D006566 ORTHO05D004366 2.3e-54 216.5 340 44.1
Psat4g055720 Pisum sativum HOM05D006566 ORTHO05D004366 3.0e-54 216.1 365 43.3
FAN04G3214 Fragaria x ananassa HOM05D006566 ORTHO05D004366 3.9e-54 215.7 346 45.1
Ca_21878_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 5.1e-54 215.3 344 43.6
Ca_21886_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 5.1e-54 215.3 344 43.6
VMungo1215G1614 Vigna mungo HOM05D006566 ORTHO05D004366 8.7e-54 214.5 344 43.9
FAN13G1045 Fragaria x ananassa HOM05D006566 ORTHO05D004366 2.5e-53 213.0 343 45.2
BcaC07g39294 Brassica carinata HOM05D006566 ORTHO05D004366 3.3e-53 212.6 316 46.2
BolC8t49939H Brassica oleracea HOM05D006566 ORTHO05D004366 3.3e-53 212.6 316 46.2
Gohir.D08G106700 Gossypium hirsutum HOM05D006566 ORTHO05D004366 3.3e-53 212.6 349 43.8
THA.LOC104821469 Tarenaya hassleriana HOM05D006566 ORTHO05D004366 3.3e-53 212.6 331 43.8
Gorai.004G113800 Gossypium raimondii HOM05D006566 ORTHO05D004366 4.3e-53 212.2 345 44.1
CSS0033214 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 7.3e-53 211.5 325 44.6
Prupe.5G180400 Prunus persica HOM05D006566 ORTHO05D004366 7.3e-53 211.5 364 41.8
FvH4_5g16290 Fragaria vesca HOM05D006566 ORTHO05D004366 1.3e-52 210.7 348 43.7
FAN08G1664 Fragaria x ananassa HOM05D006566 ORTHO05D004366 2.8e-52 209.5 345 44.6
FAN18G1223 Fragaria x ananassa HOM05D006566 ORTHO05D004366 2.8e-52 209.5 348 43.4
MD14G1188300 Malus domestica HOM05D006566 ORTHO05D004366 6.2e-52 208.4 356 42.4
Glyma.17G093800 Glycine max HOM05D006566 ORTHO05D004366 1.1e-51 207.6 313 46.6
TPR.G38369 Trifolium pratense HOM05D006566 ORTHO05D004366 1.8e-51 206.8 373 41.8
C08p23010 Brassica napus HOM05D006566 ORTHO05D004366 2.4e-51 206.5 324 44.1
Glyma.05G033200 Glycine max HOM05D006566 ORTHO05D004366 3.1e-51 206.1 319 45.5
Cfa019059 Carpinus fangiana HOM05D006566 ORTHO05D004366 1.2e-50 204.1 351 41.9
Lalb_Chr07g0182501 Lupinus albus HOM05D006566 ORTHO05D004366 1.2e-50 204.1 344 42.7
arahy.Tifrunner.gnm1.ann1.0W0WAG Arachis hypogaea HOM05D006566 ORTHO05D004366 2.0e-50 203.4 362 41.4
ClCG01G014160 Citrullus lanatus HOM05D006566 ORTHO05D004366 2.6e-50 203.0 365 42.2
arahy.Tifrunner.gnm1.ann1.1VUR4R Arachis hypogaea HOM05D006566 ORTHO05D004366 1.7e-49 200.3 368 40.8
BcaB01g00844 Brassica carinata HOM05D006566 ORTHO05D004366 2.9e-49 199.5 331 43.5
Phvul.003G196400 Phaseolus vulgaris HOM05D006566 ORTHO05D004366 2.9e-49 199.5 356 41.9
A06p19570 Brassica napus HOM05D006566 ORTHO05D004366 3.8e-49 199.1 312 45.2
PSO161G0080 Papaver somniferum HOM05D006566 ORTHO05D004366 4.9e-49 198.7 373 39.1
Aa31LG4G16730 Aethionema arabicum HOM05D006566 ORTHO05D004366 6.4e-49 198.4 341 43.4
AT3G48120 Arabidopsis thaliana HOM05D006566 ORTHO05D004366 1.1e-48 197.6 335 43.6
Carub.0005s1423 Capsella rubella HOM05D006566 ORTHO05D004366 1.4e-48 197.2 337 42.7
Sp5g13910 Schrenkiella parvula HOM05D006566 ORTHO05D004366 1.9e-48 196.8 331 44.1
Lj4g0023975 Lotus japonicus HOM05D006566 ORTHO05D004366 4.2e-48 195.7 358 41.3
MELO3C002232.2 Cucumis melo HOM05D006566 ORTHO05D004366 2.1e-47 193.4 366 40.2
Rhsim12G0161000 Rhododendron simsii HOM05D006566 ORTHO05D004366 7.9e-47 191.4 313 44.7
CARHR156850 Cardamine hirsuta HOM05D006566 ORTHO05D004366 1.0e-46 191.0 341 41.3
Medtr4g106550 Medicago truncatula HOM05D006566 ORTHO05D004366 2.3e-46 189.9 378 38.6
Ah.11g046290 Amaranthus hybridus HOM05D006566 ORTHO05D004366 1.1e-45 187.6 379 38.5
AL5G27450 Arabidopsis lyrata HOM05D006566 ORTHO05D004366 3.3e-45 186.0 330 40.9
Oeu005686.3 Olea europaea HOM05D006566 ORTHO05D004366 3.3e-45 186.0 285 46.7
Thhalv10010547m.g Eutrema salsugineum HOM05D006566 ORTHO05D004366 4.8e-44 182.2 327 40.7
MBI16_g07135_MAGBIO Magnolia biondii HOM05D006566 ORTHO05D004366 1.1e-43 181.0 365 38.9
EL10Ac5g10849 Beta vulgaris HOM05D006566 ORTHO05D004366 9.0e-43 177.9 387 34.4
BraA06t25037Z Brassica rapa HOM05D006566 ORTHO05D004366 9.0e-43 177.9 301 43.5
Hma1.2p1_0572F.1_g181020 Hydrangea macrophylla HOM05D006566 ORTHO05D004366 7.6e-42 174.9 309 40.8
AUR62008294 Chenopodium quinoa HOM05D006566 ORTHO05D004366 1.7e-41 173.7 394 35.5
Sabra15G0095700 Salix brachista HOM05D006566 ORTHO05D004366 1.4e-40 170.6 149 63.1
Sabra15G0094500 Salix brachista HOM05D006566 ORTHO05D004366 7.1e-40 168.3 156 60.3
Zm00001eb156370 Zea mays HOM05D006566 ORTHO05D004366 4.6e-39 165.6 319 40.8
AUR62031056 Chenopodium quinoa HOM05D006566 ORTHO05D004366 2.5e-37 159.8 285 40.4
Hund02706 Selenicereus undatus HOM05D006566 ORTHO05D004366 5.6e-37 158.7 393 33.3
Os01g0687600 Oryza sativa ssp. japonica HOM05D006566 ORTHO05D004366 5.3e-35 152.1 348 35.9
Peaxi162Scf00496g00038 Petunia axillaris HOM05D006566 ORTHO05D004366 9.0e-35 151.4 92 84.8
DCAR_026101 Daucus carota HOM05D006566 ORTHO05D004366 1.5e-34 150.6 123 62.6
Dinv13130 Davidia involucrata HOM05D006566 ORTHO05D004366 9.3e-32 141.4 270 41.1
SalBow5G4198 Salvia bowleyana HOM05D006566 ORTHO05D004366 1.6e-31 140.6 121 62.8
Haze_07429 Corylus avellana HOM05D006566 ORTHO05D004366 5.1e-30 135.6 183 46.4
ATR0712G004 Amborella trichopoda HOM05D006566 ORTHO05D004366 6.7e-30 135.2 378 33.1
arahy.Tifrunner.gnm1.ann1.JH7UH9 Arachis hypogaea HOM05D006566 ORTHO05D004366 5.7e-29 132.1 111 59.5
CDE06G0758 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 5.7e-29 132.1 148 52.0
Lj5P120T28 Lonicera japonica HOM05D006566 ORTHO05D004366 9.3e-24 114.8 92 71.7
Sc04g0002180 Simmondsia chinensis HOM05D006566 ORTHO05D004366 3.0e-22 109.8 284 35.2
SEGI_22753 Sequoiadendron giganteum HOM05D006566 ORTHO05D004366 3.9e-22 109.4 195 38.5
Ciclev10023573m.g Citrus clementina HOM05D006566 ORTHO05D004366 6.7e-22 108.6 174 43.7
arahy.Tifrunner.gnm1.ann1.SD125V Arachis hypogaea HOM05D006566 ORTHO05D004366 1.5e-21 107.5 97 55.7
Mapoly0207s0010 Marchantia polymorpha HOM05D006566 ORTHO05D004366 5.7e-21 105.5 190 36.3
HPP92_021882 Vanilla planifolia HOM05D006566 ORTHO05D004366 1.3e-20 104.4 288 35.8
Gohir.A08G095200 Gossypium hirsutum HOM05D006566 ORTHO05D004366 4.8e-20 102.4 251 37.1
CDE06G1032 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 1.8e-19 100.5 105 64.8
Lj5A120T53 Lonicera japonica HOM05D006566 ORTHO05D004366 2.4e-19 100.1 89 57.3
Nn2g10835 Nelumbo nucifera HOM05D006566 ORTHO05D004366 9.1e-19 98.2 77 74.0
arahy.Tifrunner.gnm1.ann1.USZI6Q Arachis hypogaea HOM05D006566 ORTHO05D004366 1.2e-18 97.8 106 50.9
Pp3c10_4330 Physcomitrium patens HOM05D006566 ORTHO05D004366 1.7e-17 94.0 176 36.4
Nn8g38961 Nelumbo nucifera HOM05D006566 ORTHO05D004366 2.9e-17 93.2 77 72.7
SMO367G0338 Selaginella moellendorffii HOM05D013869 ORTHO05D015602 1.9e-16 90.5 147 40.1
arahy.Tifrunner.gnm1.ann1.P21766 Arachis hypogaea HOM05D008215 ORTHO05D004366 1.4e-14 84.3 115 45.2
AagrBONN_evm.TU.Sc2ySwM_344.1183 Anthoceros agrestis HOM05D006566 ORTHO05D004366 2.0e-13 80.5 398 25.4
arahy.Tifrunner.gnm1.ann1.N3K4CS Arachis hypogaea HOM05D008215 ORTHO05D004366 9.7e-13 78.2 102 46.1
arahy.Tifrunner.gnm1.ann1.281UCZ Arachis hypogaea HOM05D008215 ORTHO05D004366 1.7e-12 77.4 112 42.9
arahy.Tifrunner.gnm1.ann1.8QJJ59 Arachis hypogaea HOM05D008215 ORTHO05D004366 2.8e-12 76.6 101 43.6
arahy.Tifrunner.gnm1.ann1.38ZYM9 Arachis hypogaea HOM05D008215 ORTHO05D004366 6.3e-12 75.5 75 54.7
arahy.Tifrunner.gnm1.ann1.UC8GQG Arachis hypogaea HOM05D008215 ORTHO05D004366 8.2e-12 75.1 101 42.6
arahy.Tifrunner.gnm1.ann1.696ALD Arachis hypogaea HOM05D008215 ORTHO05D004366 1.5e-10 70.9 126 41.3
arahy.Tifrunner.gnm1.ann1.YEU6LJ Arachis hypogaea HOM05D006566 ORTHO05D004366 4.5e-10 69.3 68 54.4
arahy.Tifrunner.gnm1.ann1.08U2RY Arachis hypogaea HOM05D008215 ORTHO05D004366 5.9e-10 68.9 112 40.2
arahy.Tifrunner.gnm1.ann1.01UHHT Arachis hypogaea HOM05D008215 ORTHO05D004366 1.0e-09 68.2 102 43.1
Oeu042970.1 Olea europaea HOM05D006566 ORTHO05D004366 2.2e-09 67.0 88 47.7
arahy.Tifrunner.gnm1.ann1.1P551D Arachis hypogaea HOM05D008215 ORTHO05D004366 8.5e-09 65.1 102 42.2
arahy.Tifrunner.gnm1.ann1.U9CRBQ Arachis hypogaea HOM05D008215 ORTHO05D004366 8.5e-09 65.1 102 42.2
arahy.Tifrunner.gnm1.ann1.0AYN0M Arachis hypogaea HOM05D008215 ORTHO05D004366 1.1e-08 64.7 102 42.2
arahy.Tifrunner.gnm1.ann1.J3W7RL Arachis hypogaea HOM05D008215 ORTHO05D004366 2.5e-08 63.5 102 41.2
arahy.Tifrunner.gnm1.ann1.P1RV09 Arachis hypogaea HOM05D008215 ORTHO05D004366 2.5e-08 63.5 102 41.2
arahy.Tifrunner.gnm1.ann1.P43TQX Arachis hypogaea HOM05D006566 ORTHO05D004366 2.5e-08 63.5 40 70.0
arahy.Tifrunner.gnm1.ann1.TAU4F3 Arachis hypogaea HOM05D008215 ORTHO05D004366 2.5e-08 63.5 99 42.4
arahy.Tifrunner.gnm1.ann1.1NHG9F Arachis hypogaea HOM05D008215 ORTHO05D004366 3.2e-08 63.2 102 40.2
arahy.Tifrunner.gnm1.ann1.KE1U92 Arachis hypogaea HOM05D008215 ORTHO05D004366 4.2e-08 62.8 102 40.2
arahy.Tifrunner.gnm1.ann1.3DHQ20 Arachis hypogaea HOM05D008215 ORTHO05D004366 5.5e-08 62.4 102 41.2
arahy.Tifrunner.gnm1.ann1.8PL5QC Arachis hypogaea HOM05D008215 ORTHO05D004366 7.2e-08 62.0 102 39.2
arahy.Tifrunner.gnm1.ann1.U6CLNF Arachis hypogaea HOM05D008215 ORTHO05D004366 9.4e-08 61.6 102 39.2
arahy.Tifrunner.gnm1.ann1.PJX35B Arachis hypogaea HOM05D008215 ORTHO05D004366 1.6e-07 60.8 102 39.2
arahy.Tifrunner.gnm1.ann1.8K6P1P Arachis hypogaea HOM05D008215 ORTHO05D004366 2.1e-07 60.5 91 41.8
arahy.Tifrunner.gnm1.ann1.15M8G9 Arachis hypogaea HOM05D008215 ORTHO05D004366 2.7e-07 60.1 102 39.2
arahy.Tifrunner.gnm1.ann1.N5TKCQ Arachis hypogaea HOM05D008215 ORTHO05D004366 1.4e-06 57.8 111 36.9
arahy.Tifrunner.gnm1.ann1.0B2DCJ Arachis hypogaea HOM05D008215 ORTHO05D004366 5.2e-06 55.8 56 53.6


User provided reference genes

Program Settings