Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 3.3e-92 341.7 167 100.0
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 3.1e-74 282.0 152 90.8
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 1.3e-32 143.7 121 68.6
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 1.7e-19 100.1 106 50.9
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 3.1e-18 95.9 114 48.2
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 9.1e-18 94.4 110 50.0
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 2.6e-17 92.8 71 64.8
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 7.7e-17 91.3 122 45.1
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 1.0e-16 90.9 70 62.9
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.7e-16 90.1 71 60.6
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 3.8e-16 89.0 86 53.5
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 5.0e-16 88.6 75 60.0
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.9e-15 86.7 82 48.8
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.9e-15 86.7 121 43.0
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 2.5e-15 86.3 75 60.0
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 3.2e-15 85.9 66 62.1
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 3.2e-15 85.9 122 45.9
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 4.2e-15 85.5 76 51.3
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 5.5e-15 85.1 113 45.1
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 5.5e-15 85.1 114 43.9
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 9.4e-15 84.3 73 56.2
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 9.4e-15 84.3 117 43.6
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.2e-14 84.0 74 60.8
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.2e-14 84.0 74 60.8
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.2e-14 84.0 72 61.1
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 1.6e-14 83.6 74 55.4
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 2.1e-14 83.2 121 43.8
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 2.1e-14 83.2 72 55.6
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 2.7e-14 82.8 104 46.2
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 4.7e-14 82.0 64 57.8
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 8.0e-14 81.3 86 46.5
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 1.0e-13 80.9 76 56.6
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 1.0e-13 80.9 76 59.2
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 1.4e-13 80.5 119 42.9
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 1.4e-13 80.5 66 56.1
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 3.0e-13 79.3 68 63.2
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 3.0e-13 79.3 71 56.3
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 4.0e-13 79.0 69 56.5
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 5.2e-13 78.6 75 54.7
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 5.2e-13 78.6 68 63.2
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 5.2e-13 78.6 68 63.2
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 5.2e-13 78.6 96 54.2
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 5.2e-13 78.6 89 50.6
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 6.7e-13 78.2 94 52.1
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 6.7e-13 78.2 94 52.1
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 6.7e-13 78.2 70 55.7
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.2e-12 77.4 74 55.4
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 2.0e-12 76.6 95 50.5
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 2.0e-12 76.6 95 50.5
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 3.3e-12 75.9 87 50.6
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 4.4e-12 75.5 77 49.4
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 4.4e-12 75.5 83 51.8
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 7.5e-12 74.7 77 48.1
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 7.5e-12 74.7 92 44.6
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 9.7e-12 74.3 74 47.3
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 9.7e-12 74.3 68 57.4
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.3e-11 73.9 84 51.2
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.7e-11 73.6 72 54.2
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.7e-11 73.6 89 52.8
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 2.8e-11 72.8 62 59.7
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 6.3e-11 71.6 80 46.2
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 6.3e-11 71.6 70 52.9
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 8.2e-11 71.2 62 58.1
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.1e-10 70.9 75 50.7
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 1.4e-10 70.5 86 45.3
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 2.4e-10 69.7 64 54.7
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 4.1e-10 68.9 74 50.0
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 4.1e-10 68.9 74 48.6
arahy.Tifrunner.gnm1.ann1.14GY92 Arachis hypogaea HOM05D003796 ORTHO05D004486 5.3e-10 68.6 70 48.6
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 1.2e-09 67.4 74 48.6
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 1.2e-09 67.4 64 50.0
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 1.6e-09 67.0 70 50.0
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 2.0e-09 66.6 70 50.0
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 2.0e-09 66.6 60 55.0
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 2.0e-09 66.6 60 55.0
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 3.5e-09 65.9 74 47.3
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 3.5e-09 65.9 71 47.9
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.0e-08 64.3 73 47.9
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 1.0e-08 64.3 68 47.1
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.3e-08 63.9 43 69.8
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 1.7e-08 63.5 64 48.4
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 4.2e-07 58.9 49 57.1
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 1.6e-06 57.0 60 48.3
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 3.6e-06 55.8 60 51.7


User provided reference genes

Program Settings