Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000800g0060 Nicotiana tabacum HOM05D002165 ORTHO05D001531 2.0e-36 155.2 75 100.0
Nitab4.5_0003573g0030 Nicotiana tabacum HOM05D002165 ORTHO05D001531 2.0e-36 155.2 75 100.0
Nitab4.5_0003573g0040 Nicotiana tabacum HOM05D002165 ORTHO05D001531 2.0e-36 155.2 75 100.0
Nitab4.5_0003573g0050 Nicotiana tabacum HOM05D002165 ORTHO05D001531 1.1e-31 139.4 74 91.9
Nitab4.5_0002516g0010 Nicotiana tabacum HOM05D002165 ORTHO05D001531 4.7e-22 107.5 74 73.0
Nitab4.5_0005662g0010 Nicotiana tabacum HOM05D002165 ORTHO05D001531 4.7e-22 107.5 74 74.3
Peaxi162Scf00194g00002 Petunia axillaris HOM05D002165 ORTHO05D001531 4.7e-22 107.5 71 76.1
Solyc01g101260.2 Solanum lycopersicum HOM05D002165 ORTHO05D001531 6.7e-21 103.6 72 69.4
Sopen01g044710 Solanum pennellii HOM05D002165 ORTHO05D001531 6.7e-21 103.6 72 69.4
CAN.G1248.15 Capsicum annuum HOM05D002165 ORTHO05D001531 2.0e-20 102.1 71 70.4
Cc02_g35880 Coffea canephora HOM05D002165 ORTHO05D001531 5.9e-17 90.5 66 69.7
DCAR_001884 Daucus carota HOM05D002165 ORTHO05D001531 8.5e-16 86.7 70 60.0
PGSC0003DMG400018282 Solanum tuberosum HOM05D002165 ORTHO05D001531 8.5e-16 86.7 76 60.5
Migut.N00975 Erythranthe guttata HOM05D002165 ORTHO05D001531 7.2e-15 83.6 75 60.0
Migut.B00883 Erythranthe guttata HOM05D002165 ORTHO05D001531 1.6e-14 82.4 70 61.4
DCAR_001887 Daucus carota HOM05D002165 ORTHO05D001531 4.7e-14 80.9 69 56.5
DCAR_002292 Daucus carota HOM05D002165 ORTHO05D001531 1.0e-13 79.7 69 55.1
Oeu061905.1 Olea europaea HOM05D002165 ORTHO05D001531 4.0e-13 77.8 70 57.1
DCAR_001886 Daucus carota HOM05D002165 ORTHO05D001531 4.4e-12 74.3 72 52.8
Lsat_1_v5_gn_7_63581 Lactuca sativa HOM05D002165 ORTHO05D001531 4.4e-12 74.3 72 56.9
Oeu000103.1 Olea europaea HOM05D008018 ORTHO05D001531 4.4e-12 74.3 71 59.2
DCAR_001885 Daucus carota HOM05D002165 ORTHO05D001531 7.5e-12 73.6 70 52.9
DCAR_002291 Daucus carota HOM05D002165 ORTHO05D001531 7.5e-12 73.6 72 52.8
Lsat_1_v5_gn_7_63540 Lactuca sativa HOM05D002165 ORTHO05D001531 2.2e-11 72.0 76 56.6
Lsat_1_v5_gn_7_63880 Lactuca sativa HOM05D002165 ORTHO05D001531 2.2e-11 72.0 75 53.3
CSS0027376 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 3.7e-11 71.2 61 57.4
Oeu062787.1 Olea europaea HOM05D002165 ORTHO05D001531 4.8e-11 70.9 70 58.6
FAN05G4164 Fragaria x ananassa HOM05D002165 ORTHO05D001531 6.3e-11 70.5 61 60.7
Prupe.6G304300 Prunus persica HOM05D002165 ORTHO05D001531 1.1e-10 69.7 61 62.3
ECA240G1387 Erigeron canadensis HOM05D002165 ORTHO05D001531 1.4e-10 69.3 69 53.6
FAN02G1676 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.4e-10 69.3 61 59.0
FAN09G0584 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.4e-10 69.3 61 59.0
Cpa.g.sc48.225 Carica papaya HOM05D002165 ORTHO05D001531 2.4e-10 68.6 62 58.1
ECA240G3242 Erigeron canadensis HOM05D002165 ORTHO05D001531 3.1e-10 68.2 76 53.9
FvH4_6g08530 Fragaria vesca HOM05D002165 ORTHO05D001531 4.1e-10 67.8 61 59.0
FAN14G5435 Fragaria x ananassa HOM05D002165 ORTHO05D001531 4.1e-10 67.8 61 59.0
MD04G1186400 Malus domestica HOM05D002165 ORTHO05D001531 4.1e-10 67.8 66 59.1
ECA240G0021 Erigeron canadensis HOM05D002165 ORTHO05D001531 7.0e-10 67.0 69 50.7
Actinidia17737 Actinidia chinensis HOM05D002165 ORTHO05D001531 1.2e-09 66.2 69 58.0
Lsat_1_v5_gn_7_63620 Lactuca sativa HOM05D002165 ORTHO05D001531 1.6e-09 65.9 69 53.6
Prupe.6G304200 Prunus persica HOM05D002165 ORTHO05D001531 1.6e-09 65.9 61 60.7
ECA240G3359 Erigeron canadensis HOM05D002165 ORTHO05D001531 2.7e-09 65.1 65 52.3
CARHR186860 Cardamine hirsuta HOM05D002165 ORTHO05D001531 4.5e-09 64.3 65 52.3
Ca_10205_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 4.5e-09 64.3 64 59.4
RcHm_v2.0_Chr1g0321401 Rosa chinensis HOM05D002165 ORTHO05D001531 4.5e-09 64.3 60 58.3
Lsat_1_v5_gn_9_85041 Lactuca sativa HOM05D002165 ORTHO05D001531 5.9e-09 63.9 69 44.9
Lalb_Chr07g0181571 Lupinus albus HOM05D002165 ORTHO05D001531 1.0e-08 63.2 70 54.3
ECA236G1383 Erigeron canadensis HOM05D002165 ORTHO05D001531 1.3e-08 62.8 69 46.4
Psat4g020920 Pisum sativum HOM05D002165 ORTHO05D001531 1.7e-08 62.4 70 54.3
CSS0044388 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 2.9e-08 61.6 73 49.3
Thhalv10005460m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 5.0e-08 60.8 65 49.2
Lj1g0006603 Lotus japonicus HOM05D008018 ORTHO05D001531 5.0e-08 60.8 64 48.4
Lalb_Chr02g0147531 Lupinus albus HOM05D008018 ORTHO05D001531 5.0e-08 60.8 66 57.6
Lalb_Chr12g0200511 Lupinus albus HOM05D002165 ORTHO05D001531 5.0e-08 60.8 70 50.0
AL6G38560 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 6.5e-08 60.5 65 49.2
Carub.0006s2437 Capsella rubella HOM05D002165 ORTHO05D001531 6.5e-08 60.5 65 49.2
Ciclev10013220m.g Citrus clementina HOM05D002165 ORTHO05D001531 6.5e-08 60.5 68 54.4
Lalb_Chr21g0310051 Lupinus albus HOM05D008018 ORTHO05D001531 6.5e-08 60.5 64 51.6
Lsat_1_v5_gn_9_84961 Lactuca sativa HOM05D002165 ORTHO05D001531 8.5e-08 60.1 68 42.6
Lj5g0006453 Lotus japonicus HOM05D008018 ORTHO05D001531 8.5e-08 60.1 64 57.8
Lj5g0009947 Lotus japonicus HOM05D008018 ORTHO05D001531 8.5e-08 60.1 64 57.8
Oeu062782.1 Olea europaea HOM05D002165 ORTHO05D001531 8.5e-08 60.1 70 50.0
Phvul.003G124200 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 8.5e-08 60.1 64 54.7
Dinv30952 Davidia involucrata HOM05D002165 ORTHO05D001531 1.1e-07 59.7 51 56.9
Lalb_Chr13g0299051 Lupinus albus HOM05D002165 ORTHO05D001531 1.1e-07 59.7 73 47.9
RcHm_v2.0_Chr3g0458591 Rosa chinensis HOM05D002165 ORTHO05D001531 1.1e-07 59.7 62 56.5
Ciclev10013222m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.5e-07 59.3 68 54.4
Aqoxy5G02840 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 1.9e-07 58.9 62 53.2
Lsat_1_v5_gn_9_85080 Lactuca sativa HOM05D002165 ORTHO05D001531 1.9e-07 58.9 69 49.3
Oeu062790.1 Olea europaea HOM05D002165 ORTHO05D001531 1.9e-07 58.9 71 52.1
Psat6g153800 Pisum sativum HOM05D008018 ORTHO05D001531 1.9e-07 58.9 63 54.0
ECA236G2737 Erigeron canadensis HOM05D002165 ORTHO05D001531 2.5e-07 58.5 69 42.0
Rhsim11G0104900 Rhododendron simsii HOM05D002165 ORTHO05D001531 2.5e-07 58.5 62 48.4
Ca_10202_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 3.2e-07 58.2 63 52.4
Ca_10203_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 3.2e-07 58.2 63 52.4
ECA240G0866 Erigeron canadensis HOM05D002165 ORTHO05D001531 3.2e-07 58.2 71 49.3
MELO3C025017.2 Cucumis melo HOM05D002165 ORTHO05D001531 4.2e-07 57.8 65 53.8
MD13G1137300 Malus domestica HOM05D002165 ORTHO05D001531 4.2e-07 57.8 65 53.8
Psat2g102520 Pisum sativum HOM05D008018 ORTHO05D001531 4.2e-07 57.8 63 54.0
Sed0022046 Sechium edule HOM05D002165 ORTHO05D001531 4.2e-07 57.8 62 54.8
Eucgr.H01321 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.5e-07 57.4 62 53.2
Glyma.20G091900 Glycine max HOM05D008018 ORTHO05D001531 5.5e-07 57.4 65 56.9
MD16G1133300 Malus domestica HOM05D002165 ORTHO05D001531 5.5e-07 57.4 65 53.8
Psat6g153880 Pisum sativum HOM05D008018 ORTHO05D001531 5.5e-07 57.4 63 50.8
arahy.Tifrunner.gnm1.ann1.RMBA11 Arachis hypogaea HOM05D008018 ORTHO05D001531 7.2e-07 57.0 64 54.7
TWI12G1307 Tripterygium wilfordii HOM05D002165 ORTHO05D001531 7.2e-07 57.0 71 52.1
Atru.chr12.1534 Acer truncatum HOM05D002165 ORTHO05D001531 9.4e-07 56.6 70 48.6
Atru.chr12.1536 Acer truncatum HOM05D002165 ORTHO05D001531 9.4e-07 56.6 70 48.6
Actinidia22854 Actinidia chinensis HOM05D049884 ORTHO05D055390 9.4e-07 56.6 54 61.1
Aa31LG11G9930 Aethionema arabicum HOM05D002165 ORTHO05D001531 9.4e-07 56.6 65 47.7
BcaNung03907 Brassica carinata HOM05D002165 ORTHO05D001531 9.4e-07 56.6 65 50.8
A06p36950 Brassica napus HOM05D002165 ORTHO05D001531 9.4e-07 56.6 65 50.8
BraA06t26620Z Brassica rapa HOM05D002165 ORTHO05D001531 9.4e-07 56.6 65 50.8
Medtr0187s0030 Medicago truncatula HOM05D008018 ORTHO05D001531 9.4e-07 56.6 62 53.2
Medtr0187s0060 Medicago truncatula HOM05D008018 ORTHO05D001531 9.4e-07 56.6 62 53.2
Psat6g154000 Pisum sativum HOM05D008018 ORTHO05D001531 9.4e-07 56.6 63 50.8
Psat6g154040 Pisum sativum HOM05D008018 ORTHO05D001531 9.4e-07 56.6 63 50.8
Sed0005500 Sechium edule HOM05D002165 ORTHO05D001531 9.4e-07 56.6 62 54.8
Sed0026735 Sechium edule HOM05D002165 ORTHO05D001531 9.4e-07 56.6 65 52.3
arahy.Tifrunner.gnm1.ann1.1WI4WZ Arachis hypogaea HOM05D008018 ORTHO05D001531 1.2e-06 56.2 64 53.1
CSS0004014 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 1.2e-06 56.2 70 48.6
CsaV3_6G002670 Cucumis sativus L. HOM05D002165 ORTHO05D001531 1.2e-06 56.2 65 53.8
Prupe.4G278700 Prunus persica HOM05D002165 ORTHO05D001531 1.2e-06 56.2 71 47.9
BcaNung03681 Brassica carinata HOM05D002165 ORTHO05D001531 1.6e-06 55.8 65 50.8
C07p41550 Brassica napus HOM05D002165 ORTHO05D001531 1.6e-06 55.8 65 50.8
BolC7t44687H Brassica oleracea HOM05D002165 ORTHO05D001531 1.6e-06 55.8 65 50.8
ClCG00G002170 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.6e-06 55.8 65 50.8
ClCG08G002310 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.6e-06 55.8 65 50.8
ClCG08G002360 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.6e-06 55.8 65 50.8
Eucgr.H01325 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.6e-06 55.8 62 51.6
Eucgr.H01326 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.6e-06 55.8 62 51.6
Eucgr.H01327 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.6e-06 55.8 62 51.6
Eucgr.H01329 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.6e-06 55.8 62 51.6
PSO761G0534 Papaver somniferum HOM05D002165 ORTHO05D001531 1.6e-06 55.8 61 50.8
Glyma.17G042500 Glycine max HOM05D002165 ORTHO05D001531 2.1e-06 55.5 64 51.6
MD13G1137400 Malus domestica HOM05D002165 ORTHO05D001531 2.1e-06 55.5 65 52.3
THA.LOC104818754 Tarenaya hassleriana HOM05D002165 ORTHO05D001531 2.1e-06 55.5 61 52.5
TAR362G0276 Trochodendron aralioides HOM05D002165 ORTHO05D001531 2.1e-06 55.5 60 51.7
Dinv24517 Davidia involucrata HOM05D002165 ORTHO05D001531 2.7e-06 55.1 51 51.0
Gohir.D09G243000 Gossypium hirsutum HOM05D002165 ORTHO05D001531 2.7e-06 55.1 61 49.2
Gorai.006G266800 Gossypium raimondii HOM05D002165 ORTHO05D001531 2.7e-06 55.1 61 49.2
Psat6g155760 Pisum sativum HOM05D008018 ORTHO05D001531 2.7e-06 55.1 63 50.8
Sed0009609 Sechium edule HOM05D002165 ORTHO05D001531 2.7e-06 55.1 63 52.4
BcaC01g04301 Brassica carinata HOM05D002165 ORTHO05D001531 3.6e-06 54.7 62 51.6
C03p41790 Brassica napus HOM05D002165 ORTHO05D001531 3.6e-06 54.7 62 51.6
BolC3t16462H Brassica oleracea HOM05D002165 ORTHO05D001531 3.6e-06 54.7 62 51.6
Glyma.10G143300 Glycine max HOM05D008018 ORTHO05D001531 3.6e-06 54.7 65 50.8
Gohir.A09G242300 Gossypium hirsutum HOM05D002165 ORTHO05D001531 3.6e-06 54.7 61 49.2
Lalb_Chr06g0167291 Lupinus albus HOM05D008018 ORTHO05D001531 3.6e-06 54.7 66 51.5
Phvul.007G205200 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 3.6e-06 54.7 63 52.4
BcaC04g23632 Brassica carinata HOM05D002165 ORTHO05D001531 4.7e-06 54.3 65 49.2
A09p05720 Brassica napus HOM05D002165 ORTHO05D001531 4.7e-06 54.3 65 49.2
C09p06310 Brassica napus HOM05D002165 ORTHO05D001531 4.7e-06 54.3 65 49.2
BolC9t53551H Brassica oleracea HOM05D002165 ORTHO05D001531 4.7e-06 54.3 65 49.2
BraA09t36213Z Brassica rapa HOM05D002165 ORTHO05D001531 4.7e-06 54.3 65 49.2
COL.COLO4_05484 Corchorus olitorius HOM05D002165 ORTHO05D001531 4.7e-06 54.3 70 54.3
Lj6g0008561 Lotus japonicus HOM05D002165 ORTHO05D001531 4.7e-06 54.3 71 50.7
Phvul.007G205400 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 4.7e-06 54.3 68 52.9
Phvul.007G205600 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 4.7e-06 54.3 68 52.9
Psat3g015160 Pisum sativum HOM05D008018 ORTHO05D001531 4.7e-06 54.3 66 48.5
Potri.005G002500 Populus trichocarpa HOM05D002165 ORTHO05D001531 4.7e-06 54.3 67 49.3
Potri.005G002600 Populus trichocarpa HOM05D002165 ORTHO05D001531 4.7e-06 54.3 67 49.3
TAR633G1086 Trochodendron aralioides HOM05D002165 ORTHO05D001531 4.7e-06 54.3 63 47.6
BcaC03g17834 Brassica carinata HOM05D002165 ORTHO05D001531 6.1e-06 53.9 65 49.2
BcaNung06223 Brassica carinata HOM05D002165 ORTHO05D001531 6.1e-06 53.9 65 49.2
A02p39040 Brassica napus HOM05D002165 ORTHO05D001531 6.1e-06 53.9 65 49.2
C02p58650 Brassica napus HOM05D002165 ORTHO05D001531 6.1e-06 53.9 65 49.2
BolC2t11925H Brassica oleracea HOM05D002165 ORTHO05D001531 6.1e-06 53.9 65 49.2
BraA02t08873Z Brassica rapa HOM05D002165 ORTHO05D001531 6.1e-06 53.9 65 49.2
Carub.0003s0521 Capsella rubella HOM05D002165 ORTHO05D001531 6.1e-06 53.9 69 50.7
Glyma.10G143000 Glycine max HOM05D008018 ORTHO05D001531 6.1e-06 53.9 69 52.2
Glyma.10G143200 Glycine max HOM05D008018 ORTHO05D001531 6.1e-06 53.9 63 52.4
BcaB04g19717 Brassica carinata HOM05D002165 ORTHO05D001531 8.0e-06 53.5 66 48.5
BcaB07g29941 Brassica carinata HOM05D002165 ORTHO05D001531 8.0e-06 53.5 65 47.7
CsaV3_6G002630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 8.0e-06 53.5 66 51.5
Psat2g102400 Pisum sativum HOM05D008018 ORTHO05D001531 8.0e-06 53.5 63 50.8
Psat2g102480 Pisum sativum HOM05D008018 ORTHO05D001531 8.0e-06 53.5 63 50.8
Prupe.1G207900 Prunus persica HOM05D002165 ORTHO05D001531 8.0e-06 53.5 65 50.8


User provided reference genes

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