Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.7e-77 292.0 150 100.0
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.8e-58 228.8 162 76.5
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.1e-57 226.9 162 75.3
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.4e-57 226.5 181 70.2
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 1.2e-45 186.8 162 66.0
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 1.7e-44 183.0 160 64.4
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 3.3e-43 178.7 142 67.6
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 3.3e-43 178.7 142 67.6
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 6.7e-28 127.9 150 48.7
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 2.5e-27 125.9 147 49.7
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 4.3e-27 125.2 145 47.6
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 5.6e-27 124.8 142 49.3
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 2.1e-26 122.9 146 47.9
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 8.2e-26 120.9 141 50.4
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 1.8e-25 119.8 167 44.3
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 1.8e-25 119.8 143 46.2
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 2.4e-25 119.4 177 41.8
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 9.0e-25 117.5 149 44.3
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 1.2e-24 117.1 144 45.8
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 2.0e-24 116.3 158 43.7
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 2.0e-24 116.3 149 46.3
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.6e-24 115.9 161 41.6
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 3.4e-24 115.5 148 44.6
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 3.4e-24 115.5 73 74.0
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 3.4e-24 115.5 147 45.6
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 4.5e-24 115.2 161 41.0
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 4.5e-24 115.2 150 46.0
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 7.6e-24 114.4 156 40.4
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 7.6e-24 114.4 147 48.3
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 1.0e-23 114.0 141 45.4
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 1.0e-23 114.0 145 46.2
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 1.0e-23 114.0 147 44.2
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 1.3e-23 113.6 152 44.7
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 1.3e-23 113.6 144 45.1
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 1.7e-23 113.2 174 40.2
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 1.7e-23 113.2 155 43.9
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 1.7e-23 113.2 149 43.6
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.7e-23 113.2 75 74.7
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 2.2e-23 112.8 143 45.5
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 2.2e-23 112.8 145 44.1
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 2.9e-23 112.5 147 44.2
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 3.8e-23 112.1 149 42.3
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 3.8e-23 112.1 78 69.2
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 3.8e-23 112.1 155 42.6
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 4.9e-23 111.7 149 43.0
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 4.9e-23 111.7 149 43.0
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 4.9e-23 111.7 149 43.0
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 4.9e-23 111.7 144 45.8
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 6.5e-23 111.3 171 41.5
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 6.5e-23 111.3 100 59.0
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 8.4e-23 110.9 145 44.1
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 8.4e-23 110.9 155 40.6
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 8.4e-23 110.9 132 44.7
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 1.1e-22 110.5 148 43.2
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 1.4e-22 110.2 146 43.2
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.9e-22 109.8 141 45.4
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 2.5e-22 109.4 85 64.7
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 2.5e-22 109.4 148 43.9
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 3.2e-22 109.0 146 43.2
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 4.2e-22 108.6 154 44.2
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 7.1e-22 107.8 151 42.4
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 7.1e-22 107.8 145 42.8
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 7.1e-22 107.8 141 44.7
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 7.1e-22 107.8 141 44.7
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 7.1e-22 107.8 147 42.9
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 9.3e-22 107.5 67 76.1
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 9.3e-22 107.5 144 43.1
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 1.2e-21 107.1 174 37.9
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.6e-21 106.7 158 40.5
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.6e-21 106.7 141 44.0
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 2.1e-21 106.3 157 39.5
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 2.1e-21 106.3 144 43.1
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 4.6e-21 105.1 69 75.4
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 1.0e-20 104.0 149 42.3
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 1.3e-20 103.6 144 43.8
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 1.8e-20 103.2 145 42.1
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 1.8e-20 103.2 145 42.1
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 1.8e-20 103.2 156 39.7
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 5.1e-20 101.7 68 67.6
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 6.7e-20 101.3 143 41.3
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 8.7e-20 100.9 73 65.8
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-19 100.5 127 43.3
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 1.9e-19 99.8 127 42.5
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 1.9e-19 99.8 144 41.0
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 3.3e-19 99.0 148 41.9
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.3e-19 99.0 125 43.2
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 3.3e-19 99.0 101 51.5
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.3e-19 98.6 127 41.7
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 5.7e-19 98.2 67 68.7
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 7.4e-19 97.8 92 58.7
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 2.2e-18 96.3 54 81.5
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 2.8e-18 95.9 60 71.7
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 6.3e-18 94.7 105 50.5
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 1.1e-17 94.0 177 39.0
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 1.8e-17 93.2 60 71.7
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 1.8e-17 93.2 72 59.7
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 3.1e-17 92.4 60 70.0
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 4.1e-17 92.0 119 43.7
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 6.9e-17 91.3 59 72.9
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 9.0e-17 90.9 53 81.1
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.0e-16 89.7 67 61.2
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 2.0e-16 89.7 61 70.5
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 7.6e-16 87.8 61 72.1
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 2.2e-15 86.3 51 74.5
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 5.0e-15 85.1 139 38.1
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 1.1e-14 84.0 50 74.0
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 5.5e-14 81.6 59 62.7
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 1.0e-12 77.4 119 40.3
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 3.0e-12 75.9 120 44.2
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 5.1e-12 75.1 172 32.0
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 8.8e-12 74.3 53 62.3
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 4.3e-11 72.0 51 60.8
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 1.3e-10 70.5 44 70.5
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 2.2e-10 69.7 53 56.6
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.8e-10 68.6 114 38.6
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 1.8e-09 66.6 119 37.0
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 1.2e-08 63.9 78 44.9
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 1.2e-08 63.9 73 46.6


User provided reference genes

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