Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 6.1e-43 177.2 96 100.0
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 9.5e-28 126.7 82 86.6
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 6.2e-27 124.0 88 83.0
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 8.0e-27 123.6 82 85.4
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 2.3e-26 122.1 82 82.9
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 5.2e-26 120.9 83 84.3
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.7e-24 114.8 81 82.7
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.4e-23 112.1 81 79.0
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 4.1e-23 111.3 83 79.5
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 6.6e-21 104.0 106 64.2
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 9.5e-20 100.1 84 69.0
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 2.8e-19 98.6 80 72.5
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 6.2e-19 97.4 85 67.1
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 1.8e-18 95.9 102 63.7
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 4.0e-18 94.7 81 70.4
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 8.9e-18 93.6 81 69.1
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 3.4e-17 91.7 103 60.2
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.4e-17 91.7 80 68.8
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 4.4e-17 91.3 80 67.5
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 7.6e-17 90.5 82 61.0
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 7.6e-17 90.5 82 61.0
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 3.7e-16 88.2 80 63.8
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 1.9e-15 85.9 81 64.2
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 3.2e-15 85.1 82 57.3
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 1.6e-14 82.8 82 59.8
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 2.1e-14 82.4 82 56.1
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 2.7e-14 82.0 85 54.1
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 7.8e-14 80.5 81 58.0
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 1.0e-13 80.1 83 61.4
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 3.0e-13 78.6 85 56.5
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 3.0e-13 78.6 96 53.1
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 3.9e-13 78.2 89 53.9
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 3.9e-13 78.2 82 54.9
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 5.1e-13 77.8 87 54.0
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 5.1e-13 77.8 88 55.7
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 5.1e-13 77.8 97 51.5
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 6.6e-13 77.4 82 53.7
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 8.6e-13 77.0 94 52.1
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.1e-12 76.6 77 59.7
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 1.1e-12 76.6 96 52.1
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 2.5e-12 75.5 82 56.1
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 2.5e-12 75.5 82 53.7
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 2.5e-12 75.5 65 61.5
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 3.3e-12 75.1 85 55.3
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 4.3e-12 74.7 90 54.4
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 4.3e-12 74.7 90 54.4
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 4.3e-12 74.7 92 52.2
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 5.6e-12 74.3 81 55.6
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 7.3e-12 73.9 81 55.6
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 9.6e-12 73.6 83 55.4
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 1.2e-11 73.2 82 52.4
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 1.2e-11 73.2 97 52.6
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 1.6e-11 72.8 89 52.8
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.6e-11 72.8 90 52.2
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.6e-11 72.8 89 50.6
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 1.6e-11 72.8 87 54.0
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 1.6e-11 72.8 97 48.5
Oeu030957.1 Olea europaea HOM05D006325 ORTHO05D007878 1.6e-11 72.8 60 65.0
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 1.6e-11 72.8 81 56.8
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 2.1e-11 72.4 74 56.8
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.8e-11 72.0 90 53.3
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.8e-11 72.0 90 53.3
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 2.8e-11 72.0 89 46.1
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 2.8e-11 72.0 91 51.6
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 6.2e-11 70.9 79 55.7
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 6.2e-11 70.9 91 51.6
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 1.1e-10 70.1 75 53.3
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 1.1e-10 70.1 92 54.3
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 1.1e-10 70.1 75 53.3
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 1.1e-10 70.1 75 53.3
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 1.1e-10 70.1 64 62.5
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.1e-10 70.1 76 53.9
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 1.4e-10 69.7 45 75.6
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 1.8e-10 69.3 84 52.4
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 2.4e-10 68.9 92 50.0
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 2.4e-10 68.9 88 50.0
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 3.1e-10 68.6 92 50.0
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 3.1e-10 68.6 78 55.1
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 3.1e-10 68.6 76 53.9
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 4.0e-10 68.2 42 76.2
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 4.0e-10 68.2 82 48.8
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 4.0e-10 68.2 96 45.8
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 4.0e-10 68.2 92 50.0
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 5.2e-10 67.8 82 47.6
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 6.8e-10 67.4 85 51.8
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 6.8e-10 67.4 78 53.8
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 6.8e-10 67.4 90 51.1
ClCG03G006550 Citrullus lanatus HOM05D006325 ORTHO05D007878 8.9e-10 67.0 92 47.8
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 1.2e-09 66.6 65 56.9
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 1.5e-09 66.2 66 56.1
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 1.5e-09 66.2 89 49.4
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 3.4e-09 65.1 85 47.1
Oeu030955.1 Olea europaea HOM05D006325 ORTHO05D007878 3.4e-09 65.1 38 78.9
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 4.4e-09 64.7 78 51.3
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 5.8e-09 64.3 86 46.5
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 9.9e-09 63.5 47 63.8
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 9.9e-09 63.5 86 50.0
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 1.3e-08 63.2 46 60.9
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 1.3e-08 63.2 46 60.9
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 2.2e-08 62.4 82 43.9
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 3.8e-08 61.6 94 44.7
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 3.8e-08 61.6 46 58.7
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 6.4e-08 60.8 76 50.0
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 6.4e-08 60.8 85 49.4
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 6.4e-08 60.8 84 45.2
Medtr1437s0010 Medicago truncatula HOM05D006325 ORTHO05D007878 8.4e-08 60.5 46 56.5
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.1e-07 60.1 85 48.2
Manes.15G124400 Manihot esculenta HOM05D006325 ORTHO05D007878 1.1e-07 60.1 58 58.6
COL.COLO4_31021 Corchorus olitorius HOM05D006325 ORTHO05D007878 1.4e-07 59.7 91 49.5
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 5.4e-07 57.8 39 66.7
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 5.4e-07 57.8 52 59.6
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 9.3e-07 57.0 96 43.8
Gohir.A06G139600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.6e-06 56.2 96 40.6
Aa31LG6G3080 Aethionema arabicum HOM05D012071 ORTHO05D013970 2.7e-06 55.5 44 68.2
Gohir.D10G044600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.5e-06 55.1 47 63.8
Gorai.011G047600 Gossypium raimondii HOM05D006325 ORTHO05D007878 3.5e-06 55.1 47 63.8
Duzib160G0583 Durio zibethinus HOM05D006325 ORTHO05D007878 4.6e-06 54.7 69 50.7
Gorai.010G168000 Gossypium raimondii HOM05D006325 ORTHO05D007878 7.8e-06 53.9 96 39.6
MBI18_g11235_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 7.8e-06 53.9 82 47.6


User provided reference genes

Program Settings