Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003542g0040 Nicotiana tabacum HOM05D000029 ORTHO05D029037 2.4e-59 231.9 112 100.0
Lj5A133G90 Lonicera japonica HOM05D000029 ORTHO05D004317 1.1e-24 116.7 58 93.1
Atru.chr9.1809 Acer truncatum HOM05D000029 ORTHO05D004317 3.3e-24 115.2 59 89.8
CAN.G993.16 Capsicum annuum HOM05D000029 ORTHO05D004317 3.3e-24 115.2 59 88.1
Dinv11127 Davidia involucrata HOM05D000029 ORTHO05D004317 7.4e-24 114.0 59 86.4
Nitab4.5_0000003g0890 Nicotiana tabacum HOM05D000029 ORTHO05D004317 7.4e-24 114.0 59 88.1
Oeu063273.1 Olea europaea HOM05D000029 ORTHO05D004317 7.4e-24 114.0 59 86.4
PGSC0003DMG400027071 Solanum tuberosum HOM05D000029 ORTHO05D004317 7.4e-24 114.0 59 89.8
Nitab4.5_0004177g0010 Nicotiana tabacum HOM05D000029 ORTHO05D004317 9.7e-24 113.6 59 88.1
Solyc06g071810.1 Solanum lycopersicum HOM05D000029 ORTHO05D004317 9.7e-24 113.6 59 88.1
CANSAT80G0665 Cannabis sativa HOM05D000029 ORTHO05D004317 2.2e-23 112.5 59 89.8
Potri.015G086800 Populus trichocarpa HOM05D000029 ORTHO05D004317 2.8e-23 112.1 59 84.7
Lalb_Chr08g0236871 Lupinus albus HOM05D000029 ORTHO05D004317 3.7e-23 111.7 59 88.1
FvH4_5g06700 Fragaria vesca HOM05D000029 ORTHO05D004317 4.8e-23 111.3 59 86.4
FAN08G3040 Fragaria x ananassa HOM05D000029 ORTHO05D004317 4.8e-23 111.3 59 86.4
FAN18G0676 Fragaria x ananassa HOM05D000029 ORTHO05D004317 4.8e-23 111.3 59 86.4
PGSC0003DMG400015157 Solanum tuberosum HOM05D000029 ORTHO05D004317 4.8e-23 111.3 59 88.1
CAN.G126.94 Capsicum annuum HOM05D000029 ORTHO05D004317 6.3e-23 110.9 59 88.1
Ciclev10023893m.g Citrus clementina HOM05D000029 ORTHO05D004317 6.3e-23 110.9 59 86.4
Lalb_Chr23g0273431 Lupinus albus HOM05D000029 ORTHO05D004317 6.3e-23 110.9 59 88.1
ClCG06G017540 Citrullus lanatus HOM05D000029 ORTHO05D004317 8.2e-23 110.5 59 83.1
CsaV3_1G000910 Cucumis sativus L. HOM05D000029 ORTHO05D004317 8.2e-23 110.5 59 83.1
Sed0026149 Sechium edule HOM05D000029 ORTHO05D004317 8.2e-23 110.5 59 83.1
Solyc03g111800.2 Solanum lycopersicum HOM05D000029 ORTHO05D004317 8.2e-23 110.5 59 86.4
Sopen03g030900 Solanum pennellii HOM05D000029 ORTHO05D004317 8.2e-23 110.5 59 86.4
Dinv38500 Davidia involucrata HOM05D000029 ORTHO05D004317 1.1e-22 110.2 59 86.4
FAN04G2376 Fragaria x ananassa HOM05D000029 ORTHO05D004317 1.1e-22 110.2 59 84.7
FAN13G0854 Fragaria x ananassa HOM05D000029 ORTHO05D004317 1.1e-22 110.2 59 84.7
vmacro16688 Vaccinium macrocarpon HOM05D000029 ORTHO05D004317 1.1e-22 110.2 59 83.1
HanXRQChr02g0035371 Helianthus annuus HOM05D000029 ORTHO05D004317 1.4e-22 109.8 59 84.7
Sabra15G0109500 Salix brachista HOM05D000029 ORTHO05D004317 1.4e-22 109.8 59 83.1
Ca_16112_v3 Cicer arietinum L. HOM05D000029 ORTHO05D004317 1.8e-22 109.4 59 84.7
Cc04_g10890 Coffea canephora HOM05D000029 ORTHO05D004317 1.8e-22 109.4 59 86.4
Eucgr.B00174 Eucalyptus grandis HOM05D000029 ORTHO05D004317 1.8e-22 109.4 60 80.0
Peaxi162Scf00089g00111 Petunia axillaris HOM05D000029 ORTHO05D004317 1.8e-22 109.4 59 84.7
Prupe.5G161700 Prunus persica HOM05D000029 ORTHO05D004317 1.8e-22 109.4 59 83.1
RcHm_v2.0_Chr7g0191951 Rosa chinensis HOM05D000029 ORTHO05D004317 1.8e-22 109.4 59 84.7
Haze_07630 Corylus avellana HOM05D000029 ORTHO05D004317 2.4e-22 109.0 59 83.1
MELO3C026243.2 Cucumis melo HOM05D000029 ORTHO05D004317 2.4e-22 109.0 59 81.4
Hma1.2p1_2431F.1_g322035 Hydrangea macrophylla HOM05D000029 ORTHO05D004317 3.1e-22 108.6 59 83.1
Cpa.g.sc4.22 Carica papaya HOM05D000029 ORTHO05D004317 4.1e-22 108.2 59 83.1
Cfa009515 Carpinus fangiana HOM05D000029 ORTHO05D004317 4.1e-22 108.2 59 83.1
QL10p005929 Quercus lobata HOM05D000029 ORTHO05D004317 4.1e-22 108.2 59 81.4
QL10p005937 Quercus lobata HOM05D000029 ORTHO05D004317 4.1e-22 108.2 59 81.4
CiPaw.12G033500 Carya illinoinensis HOM05D000029 ORTHO05D004317 5.3e-22 107.8 59 81.4
Ciclev10019677m.g Citrus clementina HOM05D000029 ORTHO05D004317 5.3e-22 107.8 103 54.4
SalBow5G1793 Salvia bowleyana HOM05D000029 ORTHO05D004317 5.3e-22 107.8 58 84.5
Ciclev10020580m.g Citrus clementina HOM05D000029 ORTHO05D004317 7.0e-22 107.5 59 86.4
Migut.D02032 Erythranthe guttata HOM05D000029 ORTHO05D004317 7.0e-22 107.5 59 81.4
Peaxi162Scf00763g00048 Petunia axillaris HOM05D000029 ORTHO05D004317 7.0e-22 107.5 59 81.4
RcHm_v2.0_Chr7g0191971 Rosa chinensis HOM05D000029 ORTHO05D004317 7.0e-22 107.5 59 83.1
Ciclev10019280m.g Citrus clementina HOM05D000029 ORTHO05D004317 9.1e-22 107.1 59 83.1
Ciclev10023696m.g Citrus clementina HOM05D000029 ORTHO05D004317 9.1e-22 107.1 59 83.1
SGA_v2.0_scaffold7G04171 Striga asiatica HOM05D000029 ORTHO05D004317 9.1e-22 107.1 58 82.8
EL10Ac7g18030 Beta vulgaris HOM05D000029 ORTHO05D004317 1.2e-21 106.7 58 81.0
CiPaw.11G014500 Carya illinoinensis HOM05D000029 ORTHO05D004317 1.6e-21 106.3 59 81.4
Ciclev10023722m.g Citrus clementina HOM05D000029 ORTHO05D004317 1.6e-21 106.3 59 81.4
Manes.06G112200 Manihot esculenta HOM05D000029 ORTHO05D004317 1.6e-21 106.3 59 81.4
PSO063G4241 Papaver somniferum HOM05D000029 ORTHO05D004317 1.6e-21 106.3 59 83.1
PSO067G0057 Papaver somniferum HOM05D000029 ORTHO05D004317 1.6e-21 106.3 59 83.1
Phvul.009G171200 Phaseolus vulgaris HOM05D000029 ORTHO05D004317 1.6e-21 106.3 59 81.4
CSS0019012 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D004317 2.0e-21 105.9 59 83.1
MD14G1167300 Malus domestica HOM05D000029 ORTHO05D004317 2.0e-21 105.9 59 86.4
AUR62001233 Chenopodium quinoa HOM05D000029 ORTHO05D004317 2.6e-21 105.5 63 77.8
Glyma.04G190400 Glycine max HOM05D000029 ORTHO05D004317 2.6e-21 105.5 59 81.4
HanXRQChr16g0497561 Helianthus annuus HOM05D000029 ORTHO05D004317 2.6e-21 105.5 59 83.1
HanXRQChr09g0272651 Helianthus annuus HOM05D000029 ORTHO05D004317 3.5e-21 105.1 58 81.0
Lsat_1_v5_gn_4_78640 Lactuca sativa HOM05D000029 ORTHO05D004317 3.5e-21 105.1 58 84.5
Psat5g118160 Pisum sativum HOM05D000029 ORTHO05D004317 3.5e-21 105.1 59 84.7
Lsat_1_v5_gn_1_28600 Lactuca sativa HOM05D000029 ORTHO05D004317 4.5e-21 104.8 68 73.5
Lj9P440T34 Lonicera japonica HOM05D000029 ORTHO05D004317 4.5e-21 104.8 59 81.4
SGA_v2.0_scaffold90G27804 Striga asiatica HOM05D000029 ORTHO05D004317 4.5e-21 104.8 59 81.4
TAR629G0904 Trochodendron aralioides HOM05D000029 ORTHO05D004317 4.5e-21 104.8 59 78.0
MSTRG.9700 Avicennia marina HOM05D000029 ORTHO05D004317 5.9e-21 104.4 59 79.7
COL.COLO4_19805 Corchorus olitorius HOM05D000029 ORTHO05D004317 5.9e-21 104.4 59 81.4
ECA232G0521 Erigeron canadensis HOM05D000029 ORTHO05D004317 5.9e-21 104.4 58 82.8
Glyma.06G175100 Glycine max HOM05D000029 ORTHO05D004317 5.9e-21 104.4 59 79.7
MBI06_g04696_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D004317 5.9e-21 104.4 59 76.3
TAR371G0353 Trochodendron aralioides HOM05D000029 ORTHO05D004317 5.9e-21 104.4 59 79.7
Oeu044818.1 Olea europaea HOM05D000029 ORTHO05D004317 7.7e-21 104.0 58 79.3
Potri.012G090500 Populus trichocarpa HOM05D000029 ORTHO05D004317 1.0e-20 103.6 59 78.0
THA.LOC104801545 Tarenaya hassleriana HOM05D000029 ORTHO05D004317 1.0e-20 103.6 59 81.4
Thecc.03G118500 Theobroma cacao HOM05D000029 ORTHO05D004317 1.0e-20 103.6 59 79.7
Aqoxy5G03652 Aquilegia oxysepala HOM05D000029 ORTHO05D004317 1.3e-20 103.2 59 78.0
DCAR_007458 Daucus carota HOM05D000029 ORTHO05D004317 1.3e-20 103.2 59 79.7
Lj1g0006775 Lotus japonicus HOM05D000029 ORTHO05D004317 1.3e-20 103.2 59 79.7
Manes.14G057400 Manihot esculenta HOM05D000029 ORTHO05D004317 1.3e-20 103.2 59 76.3
Nn3g16641 Nelumbo nucifera HOM05D000029 ORTHO05D004317 1.3e-20 103.2 59 79.7
TWI39G0879 Tripterygium wilfordii HOM05D000029 ORTHO05D004317 1.3e-20 103.2 59 76.3
arahy.Tifrunner.gnm1.ann1.CIB6XC Arachis hypogaea HOM05D000029 ORTHO05D004317 1.7e-20 102.8 59 81.4
Duzib068G0968 Durio zibethinus HOM05D000029 ORTHO05D004317 1.7e-20 102.8 59 79.7
ECA247G3208 Erigeron canadensis HOM05D000029 ORTHO05D004317 1.7e-20 102.8 59 79.7
Rhsim12G0170100 Rhododendron simsii HOM05D000041 ORTHO05D004317 1.7e-20 102.8 59 79.7
Ciclev10023971m.g Citrus clementina HOM05D000029 ORTHO05D004317 2.2e-20 102.4 61 77.0
HanXRQChr04g0100951 Helianthus annuus HOM05D000029 ORTHO05D004317 2.2e-20 102.4 59 79.7
Rhsim12G0170000 Rhododendron simsii HOM05D000029 ORTHO05D004317 2.2e-20 102.4 58 81.0
Sc22g0004230 Simmondsia chinensis HOM05D000029 ORTHO05D004317 2.2e-20 102.4 59 74.6
VMungo1309G0045 Vigna mungo HOM05D000029 ORTHO05D004317 2.2e-20 102.4 59 76.3
Ciclev10019853m.g Citrus clementina HOM05D000029 ORTHO05D004317 2.9e-20 102.1 61 77.0
HanXRQChr16g0497571 Helianthus annuus HOM05D000029 ORTHO05D029037 2.9e-20 102.1 59 79.7
PGR044G2134 Punica granatum HOM05D000029 ORTHO05D004317 2.9e-20 102.1 59 81.4
Ciclev10022278m.g Citrus clementina HOM05D000029 ORTHO05D004317 3.8e-20 101.7 59 79.7
Aa31LG5G5160 Aethionema arabicum HOM05D000029 ORTHO05D004317 5.0e-20 101.3 59 81.4
Ah.15g095490 Amaranthus hybridus HOM05D000029 ORTHO05D004317 5.0e-20 101.3 58 81.0
MSTRG.11513 Avicennia marina HOM05D000041 ORTHO05D004317 5.0e-20 101.3 59 76.3
Duzib205G0333 Durio zibethinus HOM05D000029 ORTHO05D004317 6.5e-20 100.9 59 76.3
HanXRQChr05g0145501 Helianthus annuus HOM05D000029 ORTHO05D004317 6.5e-20 100.9 58 79.3
AT2G31880 Arabidopsis thaliana HOM05D000029 ORTHO05D004317 8.5e-20 100.5 59 78.0
Eucgr.K02774 Eucalyptus grandis HOM05D000029 ORTHO05D004317 8.5e-20 100.5 59 74.6
Eucgr.K02775 Eucalyptus grandis HOM05D000029 ORTHO05D004317 8.5e-20 100.5 59 74.6
Eucgr.L02485 Eucalyptus grandis HOM05D000029 ORTHO05D004317 8.5e-20 100.5 59 74.6
TAR374G0353 Trochodendron aralioides HOM05D000029 ORTHO05D004317 8.5e-20 100.5 58 77.6
AL4G27170 Arabidopsis lyrata HOM05D000029 ORTHO05D004317 1.1e-19 100.1 59 78.0
Gohir.D03G102500 Gossypium hirsutum HOM05D000029 ORTHO05D004317 1.1e-19 100.1 59 76.3
Gorai.003G108000 Gossypium raimondii HOM05D000029 ORTHO05D004317 1.1e-19 100.1 59 76.3
Oeu056958.1 Olea europaea HOM05D000029 ORTHO05D004317 1.1e-19 100.1 59 76.3
BcaB01g04010 Brassica carinata HOM05D000029 ORTHO05D004317 1.9e-19 99.4 59 78.0
BcaB06g28572 Brassica carinata HOM05D000029 ORTHO05D004317 1.9e-19 99.4 59 76.3
A03p17930 Brassica napus HOM05D000029 ORTHO05D004317 1.9e-19 99.4 59 78.0
C03p21000 Brassica napus HOM05D000029 ORTHO05D004317 1.9e-19 99.4 59 78.0
BolC3t14480H Brassica oleracea HOM05D000029 ORTHO05D004317 1.9e-19 99.4 59 78.0
BraA03t11057Z Brassica rapa HOM05D000029 ORTHO05D004317 1.9e-19 99.4 59 78.0
Ciclev10021254m.g Citrus clementina HOM05D000029 ORTHO05D004317 1.9e-19 99.4 82 61.0
Thhalv10016374m.g Eutrema salsugineum HOM05D000029 ORTHO05D004317 1.9e-19 99.4 59 78.0
Migut.O00198 Erythranthe guttata HOM05D000029 ORTHO05D004317 2.5e-19 99.0 59 76.3
Ciclev10023129m.g Citrus clementina HOM05D000029 ORTHO05D029037 3.2e-19 98.6 58 77.6
TPR.G35171 Trifolium pratense HOM05D000029 ORTHO05D004317 4.2e-19 98.2 59 78.0
TPR.G24763 Trifolium pratense HOM05D000029 ORTHO05D004317 5.5e-19 97.8 59 78.0
Ciclev10021753m.g Citrus clementina HOM05D000094 ORTHO05D004317 7.2e-19 97.4 59 79.7
Nn4g22532 Nelumbo nucifera HOM05D000029 ORTHO05D004317 7.2e-19 97.4 59 78.0
ECA247G2690 Erigeron canadensis HOM05D000041 ORTHO05D004317 9.4e-19 97.1 59 72.9
BcaC02g07960 Brassica carinata HOM05D000029 ORTHO05D004317 1.6e-18 96.3 59 74.6
A04p24590 Brassica napus HOM05D000029 ORTHO05D004317 1.6e-18 96.3 59 74.6
C04p61460 Brassica napus HOM05D000029 ORTHO05D004317 1.6e-18 96.3 59 74.6
C04p61470 Brassica napus HOM05D000029 ORTHO05D004317 1.6e-18 96.3 59 74.6
BolC4t27631H Brassica oleracea HOM05D000029 ORTHO05D004317 1.6e-18 96.3 59 74.6
BolC4t27632H Brassica oleracea HOM05D000029 ORTHO05D004317 1.6e-18 96.3 59 74.6
BraA04t17978Z Brassica rapa HOM05D000029 ORTHO05D004317 1.6e-18 96.3 59 74.6
CARHR125590 Cardamine hirsuta HOM05D000029 ORTHO05D004317 2.7e-18 95.5 59 74.6
Carub.0004s1318 Capsella rubella HOM05D000029 ORTHO05D004317 3.6e-18 95.1 59 74.6
CDE09G0024 Ceratophyllum demersum HOM05D000029 ORTHO05D004317 1.4e-17 93.2 59 72.9
Sp4g14230 Schrenkiella parvula HOM05D000029 ORTHO05D004317 1.4e-17 93.2 59 72.9
Gohir.D12G189500 Gossypium hirsutum HOM05D000029 ORTHO05D004317 1.8e-17 92.8 59 71.2
Gorai.008G203300 Gossypium raimondii HOM05D000029 ORTHO05D004317 1.8e-17 92.8 59 71.2
Gohir.A12G186500 Gossypium hirsutum HOM05D000029 ORTHO05D004317 3.0e-17 92.0 59 71.2
A04p24580 Brassica napus HOM05D000029 ORTHO05D004317 4.0e-17 91.7 59 71.2
Nitab4.5_0000510g0090 Nicotiana tabacum HOM05D000029 ORTHO05D004317 2.6e-16 89.0 43 95.3
Sabra12G0065300 Salix brachista HOM05D000029 ORTHO05D004317 3.3e-16 88.6 51 70.6
Cfa019285 Carpinus fangiana HOM05D000029 ORTHO05D004317 5.7e-16 87.8 59 69.5
COL.COLO4_05418 Corchorus olitorius HOM05D000029 ORTHO05D004317 5.7e-16 87.8 59 69.5
ATR0199G026 Amborella trichopoda HOM05D000029 ORTHO05D004317 6.3e-15 84.3 59 64.4
Medtr3g075440 Medicago truncatula HOM05D000029 ORTHO05D004317 6.3e-15 84.3 59 69.5
Oeu046501.1 Olea europaea HOM05D000094 ORTHO05D004317 3.1e-14 82.0 66 60.6
Ciclev10019897m.g Citrus clementina HOM05D000029 ORTHO05D004317 7.0e-14 80.9 58 63.8
Zm00001eb380860 Zea mays HOM05D000029 ORTHO05D004317 5.9e-13 77.8 59 59.3
SEGI_05779 Sequoiadendron giganteum HOM05D000029 ORTHO05D004317 8.5e-12 73.9 58 51.7
Cc02_g32040 Coffea canephora HOM05D000094 ORTHO05D004317 1.5e-11 73.2 55 60.0
Os06g0288100 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D004317 1.6e-10 69.7 46 65.2
Mapoly0115s0067 Marchantia polymorpha HOM05D000094 ORTHO05D004317 2.3e-09 65.9 54 55.6
HPP92_024526 Vanilla planifolia HOM05D000094 ORTHO05D004317 2.6e-08 62.4 58 48.3
Pp3c10_16000 Physcomitrium patens HOM05D000029 ORTHO05D004317 1.8e-06 56.2 53 50.9
Pp3c14_17190 Physcomitrium patens HOM05D000029 ORTHO05D004317 1.8e-06 56.2 53 50.9
Aa31LG4G2660 Aethionema arabicum HOM05D000094 ORTHO05D000455 7.0e-06 54.3 67 38.8
arahy.Tifrunner.gnm1.ann1.RX41GD Arachis hypogaea HOM05D000029 ORTHO05D003419 7.0e-06 54.3 61 45.9
Zm00001eb142560 Zea mays HOM05D000094 ORTHO05D006987 9.1e-06 53.9 62 37.1


User provided reference genes

Program Settings