Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 5.8e-140 500.7 230 100.0
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 2.6e-124 448.7 230 90.0
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.3e-123 446.4 230 89.6
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.7e-123 446.0 230 88.7
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 6.4e-123 444.1 230 88.7
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 3.8e-107 391.7 230 73.9
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 8.5e-107 390.6 231 74.9
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 1.9e-106 389.4 232 74.1
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.9e-106 389.4 230 72.6
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 4.6e-105 384.8 231 72.7
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.4e-104 383.3 231 72.3
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.4e-104 383.3 231 72.3
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 8.8e-104 380.6 230 71.3
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 1.1e-103 380.2 227 70.5
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 1.1e-103 380.2 230 73.5
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 1.9e-103 379.4 230 70.9
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 5.7e-103 377.9 230 70.0
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.3e-102 376.7 230 72.6
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.3e-102 376.7 230 72.6
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 1.3e-102 376.7 232 72.4
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 2.2e-102 375.9 229 70.7
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 4.8e-102 374.8 230 70.0
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 4.8e-102 374.8 230 70.0
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 4.8e-102 374.8 230 71.7
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.2e-102 374.0 230 72.2
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 1.1e-101 373.6 230 70.9
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 1.8e-101 372.9 232 71.1
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.8e-101 372.9 228 71.1
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 3.1e-101 372.1 230 68.7
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 9.1e-101 370.5 233 68.7
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 1.2e-100 370.2 231 68.8
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 1.5e-100 369.8 234 70.9
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 2.0e-100 369.4 230 69.1
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 5.9e-100 367.9 227 69.6
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 5.9e-100 367.9 232 69.0
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 5.9e-100 367.9 234 70.5
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 7.7e-100 367.5 234 70.5
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 7.7e-100 367.5 234 70.5
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 7.7e-100 367.5 234 70.5
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 7.7e-100 367.5 235 68.5
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 1.0e-99 367.1 229 68.6
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 1.7e-99 366.3 234 70.1
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 1.7e-99 366.3 234 70.5
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 1.7e-99 366.3 230 67.4
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 3.8e-99 365.2 230 70.0
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 5.0e-99 364.8 236 69.1
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 5.0e-99 364.8 234 70.1
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 5.0e-99 364.8 233 67.8
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 1.1e-98 363.6 233 67.8
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 1.1e-98 363.6 231 69.7
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 1.4e-98 363.2 230 68.3
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 1.9e-98 362.8 228 68.0
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 4.2e-98 361.7 230 68.3
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 5.5e-98 361.3 235 67.2
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 7.2e-98 360.9 265 61.1
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 7.2e-98 360.9 233 67.0
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 7.2e-98 360.9 233 67.8
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 9.4e-98 360.5 232 69.0
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 4.7e-97 358.2 230 67.8
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 4.7e-97 358.2 230 67.4
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 6.1e-97 357.8 237 67.1
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 6.1e-97 357.8 226 69.0
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 6.1e-97 357.8 237 65.0
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 7.9e-97 357.5 232 68.1
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 1.8e-96 356.3 233 66.5
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 2.3e-96 355.9 230 67.8
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 3.0e-96 355.5 228 66.7
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 6.7e-96 354.4 230 67.8
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.7e-94 349.7 228 64.9
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 2.2e-94 349.4 228 67.1
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 3.7e-94 348.6 234 65.8
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 3.7e-94 348.6 227 64.3
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 6.3e-94 347.8 232 67.2
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 6.3e-94 347.8 228 64.5
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 8.2e-94 347.4 228 68.4
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 8.2e-94 347.4 218 67.9
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 8.2e-94 347.4 227 65.2
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 1.1e-93 347.1 233 65.7
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 4.1e-93 345.1 233 66.5
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 7.0e-93 344.4 229 64.2
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 9.1e-93 344.0 229 64.6
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 9.1e-93 344.0 229 64.6
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 9.1e-93 344.0 229 64.6
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 1.5e-92 343.2 229 64.2
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 2.6e-92 342.4 229 64.6
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 2.6e-92 342.4 229 64.2
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 4.5e-92 341.7 232 65.9
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 4.5e-92 341.7 227 63.9
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 4.5e-92 341.7 227 64.8
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 7.7e-92 340.9 231 62.8
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 6.5e-91 337.8 229 62.0
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 8.5e-91 337.4 229 62.9
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 8.5e-91 337.4 241 64.7
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 8.5e-91 337.4 227 62.6
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.1e-90 337.0 227 62.1
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.4e-90 336.7 227 62.6
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 5.5e-90 334.7 277 56.7
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 1.2e-89 333.6 229 62.0
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 1.6e-89 333.2 231 61.9
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 1.6e-89 333.2 229 61.6
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 3.6e-89 332.0 231 64.1
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 8.0e-89 330.9 191 77.5
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 1.8e-88 329.7 231 61.0
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 8.8e-88 327.4 224 66.5
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 2.0e-87 326.2 229 62.0
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 2.8e-86 322.4 231 61.5
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.8e-86 322.4 174 77.6
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 7.0e-85 317.8 230 65.2
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 4.5e-84 315.1 230 64.8
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 1.2e-79 300.4 228 58.3
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 8.2e-78 294.3 194 66.0
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 9.1e-77 290.8 201 72.1
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 1.2e-76 290.4 254 56.7
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.6e-76 290.0 256 55.9
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 3.8e-75 285.4 223 61.0
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.1e-74 283.9 218 57.8
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 7.5e-71 271.2 231 56.3
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 2.8e-65 252.7 232 50.4
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 8.9e-64 247.7 152 69.7
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 1.2e-63 247.3 137 77.4
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.2e-60 237.3 230 48.3
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 2.9e-59 232.6 160 63.1
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 6.6e-59 231.5 230 47.4
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 1.1e-58 230.7 134 75.4
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.4e-56 223.8 155 62.6
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 2.3e-56 223.0 143 69.9
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 4.0e-56 222.2 229 45.0
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 1.0e-51 207.6 160 55.6
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 1.3e-51 207.2 99 89.9
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 1.5e-50 203.8 183 50.3
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 8.0e-49 198.0 143 61.5
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 4.9e-46 188.7 98 80.6
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 2.3e-43 179.9 227 44.9
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 6.6e-43 178.3 120 66.7
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 7.3e-34 148.3 75 82.7
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 2.8e-33 146.4 91 69.2
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 1.4e-32 144.1 99 62.6
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 3.4e-31 139.4 99 60.6
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 7.6e-31 138.3 75 77.3
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 2.5e-26 123.2 98 52.0
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.8e-24 117.1 102 51.0
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.0e-23 113.6 75 68.0
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.5e-18 97.4 52 78.8


User provided reference genes

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