Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.7e-232 808.9 394 100.0
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 4.1e-226 787.7 394 97.2
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 6.1e-222 773.9 394 95.4
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 8.3e-203 710.3 402 88.1
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 2.3e-197 692.2 366 92.1
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 8.8e-197 690.3 395 86.1
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 1.1e-194 683.3 366 91.3
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 3.3e-183 645.2 406 81.8
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 2.9e-171 605.5 404 73.8
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 3.8e-163 578.6 396 70.2
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 2.4e-162 575.9 403 71.5
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 2.4e-162 575.9 401 69.8
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 7.1e-162 574.3 412 68.7
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 1.3e-160 570.1 397 70.8
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 5.1e-160 568.2 405 69.4
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 6.6e-160 567.8 370 74.1
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 8.6e-160 567.4 402 68.2
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 8.6e-160 567.4 386 69.9
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 3.3e-159 565.5 387 71.8
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 9.6e-159 563.9 412 68.2
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 1.6e-158 563.1 403 68.7
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 2.8e-158 562.4 402 67.9
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.6e-158 562.0 403 68.5
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 3.6e-158 562.0 401 69.6
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 4.7e-158 561.6 399 69.7
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 4.7e-158 561.6 403 69.7
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 6.2e-158 561.2 403 69.2
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 8.1e-158 560.8 403 70.0
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 8.1e-158 560.8 377 71.1
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.1e-157 560.5 397 67.5
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.4e-157 560.1 403 68.5
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 1.4e-157 560.1 405 67.4
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 1.8e-157 559.7 395 71.1
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 2.4e-157 559.3 370 73.5
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.1e-157 558.9 403 68.5
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 4.0e-157 558.5 397 67.8
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 4.0e-157 558.5 401 69.3
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 5.2e-157 558.1 395 71.4
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 1.2e-156 557.0 400 68.5
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.5e-156 556.6 397 67.5
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 9.9e-156 553.9 370 72.2
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 1.3e-155 553.5 425 65.4
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 1.3e-155 553.5 376 70.2
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 8.4e-155 550.8 385 68.3
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 2.4e-154 549.3 396 67.2
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.2e-154 548.5 396 68.2
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 4.2e-154 548.5 371 72.8
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 9.3e-154 547.4 385 67.8
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 1.6e-153 546.6 403 67.0
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 7.8e-153 544.3 404 67.8
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 2.3e-152 542.7 407 66.3
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 3.0e-152 542.3 375 68.8
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 3.0e-152 542.3 375 68.8
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 3.9e-152 542.0 404 67.6
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 6.6e-152 541.2 401 65.6
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 1.1e-151 540.4 398 67.8
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 1.1e-151 540.4 378 68.8
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 1.1e-151 540.4 378 68.8
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 3.3e-151 538.9 398 67.6
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 3.3e-151 538.9 377 68.2
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 4.3e-151 538.5 397 65.5
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 4.3e-151 538.5 376 68.6
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 4.3e-151 538.5 392 66.3
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 5.6e-151 538.1 408 65.2
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 7.3e-151 537.7 380 68.4
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 1.6e-150 536.6 383 67.4
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 2.1e-150 536.2 395 66.8
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 2.1e-150 536.2 384 67.7
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 3.6e-150 535.4 410 66.1
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 3.6e-150 535.4 384 69.3
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 4.8e-150 535.0 389 66.1
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 6.2e-150 534.6 401 65.3
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 8.1e-150 534.3 396 65.2
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 1.1e-149 533.9 409 65.8
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 1.8e-149 533.1 386 67.4
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 5.3e-149 531.6 390 66.7
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 9.0e-149 530.8 384 66.1
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 9.0e-149 530.8 435 62.8
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 2.0e-148 529.6 379 67.3
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 5.8e-148 528.1 379 66.8
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 2.9e-147 525.8 395 65.8
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 3.8e-147 525.4 402 65.2
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 2.4e-146 522.7 377 68.2
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 2.4e-146 522.7 399 66.7
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 5.4e-146 521.5 374 67.4
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 9.3e-146 520.8 376 66.5
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 1.6e-145 520.0 383 66.3
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 3.5e-145 518.8 362 68.2
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 6.0e-145 518.1 396 65.2
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 5.1e-144 515.0 390 65.9
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.3e-142 510.4 380 65.8
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.5e-140 503.4 371 66.3
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 7.6e-140 501.1 366 65.8
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 4.2e-138 495.4 399 62.7
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 2.7e-137 492.7 378 65.1
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 3.0e-136 489.2 379 64.4
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 3.9e-136 488.8 434 57.6
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 5.1e-136 488.4 353 67.4
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 1.1e-135 487.3 378 62.4
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 1.3e-134 483.8 394 62.7
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 1.2e-132 477.2 329 69.6
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.1e-130 470.7 404 59.4
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.4e-130 470.3 404 59.4
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 3.5e-129 465.7 384 59.9
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 3.9e-128 462.2 362 62.7
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 4.3e-127 458.8 384 59.6
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 6.3e-126 454.9 378 59.3
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 2.6e-124 449.5 403 58.1
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 9.1e-117 424.5 366 55.2
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 3.8e-115 419.1 294 69.0
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 7.2e-114 414.8 294 68.0
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 1.6e-113 413.7 375 54.1
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 2.1e-113 413.3 379 55.4
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 2.7e-113 412.9 377 55.2
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.8e-112 410.2 289 68.2
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 3.0e-112 409.5 402 55.5
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 1.5e-111 407.1 599 41.6
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 8.2e-110 401.4 368 59.2
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 6.9e-109 398.3 366 54.1
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 1.6e-105 387.1 262 70.2
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 8.8e-104 381.3 259 67.6
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 5.7e-103 378.6 362 50.0
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 4.8e-102 375.6 241 75.1
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 8.2e-102 374.8 255 69.0
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 2.9e-99 366.3 271 68.3
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 1.1e-98 364.4 268 68.3
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 1.5e-98 364.0 251 67.3
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.2e-95 354.4 377 50.4
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 1.5e-95 354.0 240 66.7
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 2.0e-95 353.6 239 66.5
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 3.3e-95 352.8 250 67.2
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 1.6e-89 334.0 401 46.1
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 8.0e-89 331.6 243 67.1
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 2.1e-81 307.0 357 45.9
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 1.3e-78 297.7 192 70.8
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 8.9e-64 248.4 158 75.3
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.5e-63 247.7 277 50.9
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 9.2e-53 211.8 231 51.5
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.6e-52 211.1 209 50.7
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 2.0e-47 194.1 132 72.0
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 9.6e-42 175.3 156 55.1
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 2.4e-40 170.6 115 66.1
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 3.2e-37 160.2 131 62.6
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 5.4e-37 159.5 401 31.9
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 4.3e-34 149.8 106 65.1
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 4.0e-32 143.3 394 30.5
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 2.6e-31 140.6 296 33.1
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 2.7e-28 130.6 174 44.8
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 3.7e-25 120.2 97 56.7
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 2.6e-23 114.0 70 67.1
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 1.6e-20 104.8 399 27.8
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 2.1e-20 104.4 93 58.1
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 5.1e-19 99.8 93 55.9
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 5.6e-18 96.3 93 54.8
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 6.2e-17 92.8 76 57.9
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 1.6e-09 68.2 52 59.6
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 1.4e-08 65.1 54 53.7
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 2.4e-08 64.3 55 54.5
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 6.9e-08 62.8 59 55.9
MELO3C035473.2 Cucumis melo HOM05D040713 ORTHO05D005180 1.7e-06 58.2 43 67.4


User provided reference genes

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