Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 3.2e-75 285.0 148 100.0
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.8e-49 199.5 244 53.7
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 4.0e-41 171.8 239 48.1
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 2.0e-40 169.5 239 47.7
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 3.1e-38 162.2 108 77.8
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 7.8e-37 157.5 239 45.6
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 2.4e-30 136.0 233 45.1
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 6.2e-18 94.7 242 34.3
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 2.3e-17 92.8 103 50.5
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 3.4e-16 89.0 238 31.9
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 2.2e-15 86.3 108 50.0
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 6.4e-15 84.7 108 50.0
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.1e-14 84.0 103 46.6
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 1.2e-13 80.5 238 31.1
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 2.1e-13 79.7 108 45.4
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.7e-13 79.3 243 31.7
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 4.6e-13 78.6 249 31.7
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 1.0e-12 77.4 238 31.9
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 1.0e-12 77.4 111 45.9
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 6.6e-12 74.7 109 42.2
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 8.6e-12 74.3 110 40.0
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 1.9e-11 73.2 109 40.4
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 2.5e-11 72.8 106 49.1
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 4.3e-11 72.0 108 41.7
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 4.3e-11 72.0 108 41.7
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 4.3e-11 72.0 117 43.6
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 1.2e-10 70.5 181 32.0
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.1e-10 69.7 99 43.4
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 2.1e-10 69.7 108 40.7
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 2.1e-10 69.7 244 29.5
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 2.8e-10 69.3 117 41.0
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 3.6e-10 68.9 242 30.2
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 3.6e-10 68.9 103 46.6
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 6.2e-10 68.2 119 40.3
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 6.2e-10 68.2 110 43.6
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 8.1e-10 67.8 109 40.4
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 8.1e-10 67.8 109 40.4
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.1e-09 67.4 240 31.2
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.1e-09 67.4 240 31.2
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 1.1e-09 67.4 108 44.4
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.1e-09 67.4 108 42.6
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 1.4e-09 67.0 108 37.0
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.4e-09 67.0 206 32.5
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 1.4e-09 67.0 108 38.9
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.4e-09 67.0 238 30.3
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 1.8e-09 66.6 242 28.5
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.8e-09 66.6 240 31.2
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 2.4e-09 66.2 244 28.3
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 2.4e-09 66.2 109 40.4
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 2.4e-09 66.2 108 44.4
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 2.4e-09 66.2 108 44.4
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 2.4e-09 66.2 112 40.2
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 3.1e-09 65.9 105 42.9
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 5.2e-09 65.1 247 30.4
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 5.2e-09 65.1 249 30.5
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 5.2e-09 65.1 121 39.7
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 1.2e-08 63.9 108 42.6
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 1.2e-08 63.9 111 45.0
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.5e-08 63.5 239 28.5
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 1.5e-08 63.5 239 28.0
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.5e-08 63.5 107 46.7
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.0e-08 63.2 59 57.6
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 3.4e-08 62.4 239 29.7
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 3.4e-08 62.4 105 43.8
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 3.4e-08 62.4 238 29.4
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 4.4e-08 62.0 109 42.2
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 4.4e-08 62.0 238 28.6
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 5.8e-08 61.6 109 42.2
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 5.8e-08 61.6 111 40.5
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 7.6e-08 61.2 245 28.2
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 7.6e-08 61.2 105 43.8
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 2.2e-07 59.7 104 39.4
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.2e-07 59.7 55 58.2
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 2.9e-07 59.3 56 53.6
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 4.9e-07 58.5 146 34.2
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 8.4e-07 57.8 111 39.6
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 8.4e-07 57.8 89 40.4
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.1e-06 57.4 111 38.7
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 1.4e-06 57.0 104 39.4
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 1.4e-06 57.0 238 29.0
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.9e-06 56.6 104 39.4
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.9e-06 56.6 59 52.5
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 2.4e-06 56.2 109 42.2
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 2.4e-06 56.2 110 40.0
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 4.2e-06 55.5 111 39.6
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 7.1e-06 54.7 102 40.2
Migut.H01199 Erythranthe guttata HOM05D005346 ORTHO05D007051 7.1e-06 54.7 103 38.8
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 7.1e-06 54.7 103 41.7
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 9.2e-06 54.3 112 39.3


User provided reference genes

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