Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.6e-95 352.1 177 100.0
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 6.5e-91 337.4 169 100.0
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 4.4e-87 324.7 177 91.5
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 5.7e-87 324.3 176 91.5
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 5.7e-87 324.3 176 91.5
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 2.2e-86 322.4 169 94.7
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 1.7e-83 312.8 169 91.7
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 1.7e-83 312.8 177 89.8
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 2.5e-82 308.9 177 88.1
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 7.2e-82 307.4 177 86.4
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 9.5e-82 307.0 175 87.4
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 1.6e-81 306.2 177 84.7
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 1.6e-81 306.2 176 88.1
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 2.1e-81 305.8 177 87.0
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 2.8e-81 305.4 175 86.9
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 4.7e-81 304.7 177 85.3
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 8.0e-81 303.9 177 86.4
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 8.0e-81 303.9 177 84.7
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.3e-80 302.4 180 85.6
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.8e-80 300.8 177 85.9
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.8e-80 300.8 177 85.9
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 6.8e-80 300.8 178 84.3
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 1.2e-79 300.1 168 88.7
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 1.5e-79 299.7 180 82.8
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.5e-79 299.7 177 85.9
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 2.6e-79 298.9 181 82.9
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 3.4e-79 298.5 177 83.6
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 4.4e-79 298.1 169 87.6
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 7.5e-79 297.4 176 84.7
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 9.8e-79 297.0 177 84.7
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 9.8e-79 297.0 181 84.5
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 9.8e-79 297.0 169 87.6
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 1.7e-78 296.2 176 84.7
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 2.2e-78 295.8 182 81.3
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 3.7e-78 295.0 180 81.7
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 3.7e-78 295.0 180 82.8
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 3.7e-78 295.0 181 84.0
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 3.7e-78 295.0 181 84.0
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 4.9e-78 294.7 177 83.1
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 1.1e-77 293.5 179 82.1
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 1.8e-77 292.7 200 77.0
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 1.8e-77 292.7 178 83.1
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.4e-77 292.4 177 83.6
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.2e-77 292.0 177 82.5
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 1.2e-76 290.0 176 81.8
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 1.6e-76 289.7 177 81.4
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 2.0e-76 289.3 179 81.6
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 3.5e-76 288.5 180 82.2
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 3.5e-76 288.5 184 78.8
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 4.5e-76 288.1 163 89.0
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 5.9e-76 287.7 179 81.6
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 5.9e-76 287.7 180 82.2
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 5.9e-76 287.7 176 80.1
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 1.3e-75 286.6 179 81.0
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 5.0e-75 284.6 179 81.0
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 8.6e-75 283.9 180 80.6
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 1.1e-74 283.5 175 81.1
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 1.5e-74 283.1 155 91.0
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 3.3e-74 282.0 161 85.1
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 3.3e-74 282.0 159 86.8
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 3.3e-74 282.0 175 80.6
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 1.6e-73 279.6 175 80.6
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 1.6e-73 279.6 161 85.1
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 2.1e-73 279.3 175 82.3
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 2.1e-73 279.3 183 78.1
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 2.8e-73 278.9 187 77.5
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 2.8e-73 278.9 179 77.7
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.6e-73 278.5 159 86.8
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 3.6e-73 278.5 173 80.3
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 4.7e-73 278.1 161 83.9
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 1.0e-72 276.9 175 81.7
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.0e-72 276.9 159 86.2
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 1.0e-72 276.9 176 77.3
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.4e-72 276.6 166 83.1
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 1.4e-72 276.6 180 76.7
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 2.3e-72 275.8 180 77.8
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 6.8e-72 274.2 189 74.6
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 6.8e-72 274.2 158 84.8
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 8.9e-72 273.9 172 79.7
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 1.5e-71 273.1 167 80.2
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 2.0e-71 272.7 169 82.8
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 2.0e-71 272.7 158 85.4
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 2.6e-71 272.3 175 78.3
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 4.4e-71 271.6 159 84.9
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 4.4e-71 271.6 159 84.9
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 5.8e-71 271.2 160 83.8
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 5.8e-71 271.2 180 75.0
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 5.8e-71 271.2 177 75.1
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 7.5e-71 270.8 160 83.8
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 9.8e-71 270.4 169 82.2
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 1.3e-70 270.0 169 79.9
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 1.7e-70 269.6 159 84.9
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.7e-70 269.6 177 75.1
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 3.7e-70 268.5 160 82.5
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 8.3e-70 267.3 162 80.9
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 1.1e-69 266.9 175 76.6
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 1.4e-69 266.5 159 81.1
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 5.4e-69 264.6 145 91.0
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 7.0e-69 264.2 159 81.8
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 2.0e-68 262.7 145 90.3
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 6.0e-68 261.2 137 97.1
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 3.0e-67 258.8 176 72.2
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.9e-66 256.1 148 87.8
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 1.9e-66 256.1 145 86.2
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 3.3e-66 255.4 171 76.0
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 2.1e-65 252.7 146 85.6
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.8e-65 252.3 184 71.2
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.8e-65 252.3 142 87.3
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 3.6e-65 251.9 137 91.2
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 4.7e-65 251.5 172 75.0
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 8.0e-65 250.8 173 74.6
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 1.4e-64 250.0 158 79.1
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 8.9e-64 247.3 139 85.6
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 5.8e-63 244.6 167 75.4
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 2.4e-61 239.2 154 76.0
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 5.4e-61 238.0 177 72.3
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 4.4e-55 218.4 162 69.8
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 4.4e-55 218.4 164 61.6
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 6.4e-54 214.5 135 81.5
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 7.1e-53 211.1 155 72.3
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 2.7e-52 209.1 175 56.0
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 3.3e-50 202.2 109 92.7
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 1.1e-48 197.2 117 81.2
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 2.4e-48 196.1 117 87.2
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 3.4e-47 192.2 109 84.4
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 7.6e-47 191.0 143 69.9
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 4.9e-46 188.3 126 77.0
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 9.6e-42 174.1 113 77.9
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 2.0e-39 166.4 150 55.3
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 1.7e-38 163.3 111 73.0
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.2e-36 157.1 127 65.4
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 2.1e-36 156.4 100 77.0
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.5e-34 150.2 77 92.2
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 1.6e-33 146.7 185 49.7
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.4e-32 143.7 119 64.7
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.8e-32 143.3 119 65.5
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 5.8e-31 138.3 82 82.9
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 4.9e-30 135.2 93 73.1
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.4e-30 134.8 77 81.8
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.4e-29 132.9 77 84.4
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.2e-29 132.5 68 91.2
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.5e-28 129.0 154 50.0
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 1.1e-24 117.5 120 60.0
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 5.3e-24 115.2 64 90.6
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.0e-19 100.9 77 67.5
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 3.3e-18 95.9 66 71.2
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 7.4e-18 94.7 52 86.5
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 4.1e-16 89.0 58 72.4
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 2.0e-15 86.7 58 74.1


User provided reference genes

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