Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.2e-19 98.6 43 100.0
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 1.3e-16 88.6 43 93.0
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 1.3e-16 88.6 43 93.0
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.3e-16 88.6 43 93.0
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.3e-16 88.6 43 93.0
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 1.3e-16 88.6 43 93.0
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 1.3e-16 88.6 43 93.0
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.3e-16 88.6 43 93.0
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 1.7e-16 88.2 43 90.7
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 1.7e-16 88.2 43 90.7
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 1.7e-16 88.2 43 90.7
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.7e-16 88.2 43 93.0
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 1.7e-16 88.2 43 90.7
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 2.2e-16 87.8 43 90.7
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 2.9e-16 87.4 43 90.7
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 2.9e-16 87.4 43 90.7
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 3.7e-16 87.0 43 90.7
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 3.7e-16 87.0 43 90.7
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 3.7e-16 87.0 43 90.7
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 3.7e-16 87.0 43 90.7
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 3.7e-16 87.0 43 90.7
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 3.7e-16 87.0 43 90.7
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 4.9e-16 86.7 43 90.7
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 4.9e-16 86.7 43 90.7
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 4.9e-16 86.7 42 92.9
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 6.4e-16 86.3 43 90.7
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 6.4e-16 86.3 43 90.7
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 6.4e-16 86.3 43 86.0
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 6.4e-16 86.3 43 88.4
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 8.3e-16 85.9 43 88.4
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 8.3e-16 85.9 43 88.4
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 8.3e-16 85.9 43 88.4
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 8.3e-16 85.9 43 88.4
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 8.3e-16 85.9 43 88.4
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 1.1e-15 85.5 43 90.7
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 1.1e-15 85.5 43 90.7
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.1e-15 85.5 43 86.0
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 1.1e-15 85.5 43 90.7
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 1.1e-15 85.5 43 90.7
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 1.1e-15 85.5 43 90.7
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 1.1e-15 85.5 43 90.7
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 1.4e-15 85.1 43 88.4
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 1.4e-15 85.1 43 88.4
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 1.4e-15 85.1 43 88.4
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.4e-15 85.1 43 88.4
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.4e-15 85.1 43 88.4
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.4e-15 85.1 43 88.4
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 1.4e-15 85.1 43 88.4
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 1.4e-15 85.1 43 88.4
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 1.4e-15 85.1 43 88.4
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 1.4e-15 85.1 43 88.4
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 1.4e-15 85.1 43 88.4
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 1.9e-15 84.7 43 88.4
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 1.9e-15 84.7 43 86.0
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 1.9e-15 84.7 43 88.4
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 1.9e-15 84.7 43 86.0
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.4e-15 84.3 43 88.4
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 2.4e-15 84.3 43 88.4
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 2.4e-15 84.3 43 83.7
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 2.4e-15 84.3 43 83.7
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 3.2e-15 84.0 43 86.0
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 3.2e-15 84.0 44 90.9
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 3.2e-15 84.0 44 90.9
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 4.1e-15 83.6 43 88.4
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 4.1e-15 83.6 43 86.0
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 4.1e-15 83.6 43 88.4
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 4.1e-15 83.6 43 88.4
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 4.1e-15 83.6 43 88.4
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 4.1e-15 83.6 43 88.4
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 4.1e-15 83.6 43 88.4
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 4.1e-15 83.6 43 88.4
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 5.4e-15 83.2 43 86.0
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 7.1e-15 82.8 43 83.7
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 7.1e-15 82.8 43 83.7
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 7.1e-15 82.8 43 86.0
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 9.2e-15 82.4 43 83.7
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 9.2e-15 82.4 43 83.7
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 1.2e-14 82.0 43 88.4
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 1.2e-14 82.0 43 88.4
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 1.2e-14 82.0 43 88.4
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 1.2e-14 82.0 43 88.4
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.2e-14 82.0 43 86.0
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 1.2e-14 82.0 43 86.0
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 1.2e-14 82.0 43 86.0
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 1.2e-14 82.0 43 86.0
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 1.2e-14 82.0 42 85.7
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 2.1e-14 81.3 43 86.0
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 2.1e-14 81.3 43 86.0
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 2.1e-14 81.3 43 86.0
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 2.1e-14 81.3 43 86.0
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 2.1e-14 81.3 43 86.0
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 2.1e-14 81.3 43 86.0
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 2.1e-14 81.3 43 86.0
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 2.1e-14 81.3 43 86.0
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 2.1e-14 81.3 43 86.0
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 2.1e-14 81.3 43 86.0
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 2.1e-14 81.3 43 86.0
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 2.1e-14 81.3 43 86.0
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 2.1e-14 81.3 43 86.0
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 2.1e-14 81.3 43 86.0
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 2.1e-14 81.3 43 86.0
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 2.1e-14 81.3 43 86.0
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 2.1e-14 81.3 43 86.0
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 2.1e-14 81.3 43 86.0
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 2.7e-14 80.9 43 81.4
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 2.7e-14 80.9 43 83.7
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 2.7e-14 80.9 43 81.4
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 2.7e-14 80.9 43 81.4
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 3.5e-14 80.5 43 81.4
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 4.6e-14 80.1 43 83.7
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 4.6e-14 80.1 43 83.7
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 4.6e-14 80.1 43 83.7
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 6.0e-14 79.7 43 83.7
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 6.0e-14 79.7 43 81.4
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 6.0e-14 79.7 43 81.4
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 7.8e-14 79.3 43 83.7
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 7.8e-14 79.3 43 79.1
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 7.8e-14 79.3 43 79.1
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 1.0e-13 79.0 43 83.7
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 1.3e-13 78.6 43 83.7
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.3e-13 78.6 43 81.4
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 1.7e-13 78.2 43 79.1
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 2.3e-13 77.8 43 83.7
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 2.3e-13 77.8 43 83.7
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 2.3e-13 77.8 43 81.4
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.0e-13 77.4 43 79.1
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 3.0e-13 77.4 43 81.4
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 3.0e-13 77.4 43 79.1
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 3.9e-13 77.0 43 74.4
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 3.9e-13 77.0 43 81.4
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 5.1e-13 76.6 43 81.4
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 5.1e-13 76.6 43 81.4
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 6.6e-13 76.3 43 81.4
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 1.1e-12 75.5 43 79.1
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 1.5e-12 75.1 44 81.8
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 1.5e-12 75.1 43 74.4
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.9e-12 74.7 43 72.1
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 3.3e-12 73.9 43 76.7
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 7.3e-12 72.8 43 74.4
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 9.5e-12 72.4 43 72.1
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.4e-10 68.6 32 87.5
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 6.8e-10 66.2 40 75.0
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 4.4e-09 63.5 43 72.1
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.3e-08 62.0 77 44.2
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 1.9e-07 58.2 43 58.1
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 4.1e-07 57.0 43 60.5
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 1.2e-06 55.5 42 57.1


User provided reference genes

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