Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.1e-170 603.2 291 100.0
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.1e-150 535.8 287 92.3
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 5.3e-138 494.6 282 86.5
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 9.0e-138 493.8 282 86.5
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 4.9e-128 461.5 271 81.2
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 6.4e-128 461.1 271 81.5
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 3.9e-125 451.8 275 77.5
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 4.8e-123 444.9 287 76.0
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 7.6e-121 437.6 247 86.2
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.7e-120 436.4 265 80.4
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 4.9e-120 434.9 272 78.3
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 1.4e-119 433.3 291 72.5
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 1.4e-119 433.3 266 77.4
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 9.3e-119 430.6 272 73.9
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 1.2e-118 430.3 272 74.6
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 1.6e-118 429.9 263 77.9
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 2.1e-118 429.5 265 80.0
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 8.7e-117 424.1 276 72.5
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 1.1e-116 423.7 284 71.8
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.5e-116 423.3 266 76.3
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.9e-116 422.9 276 72.5
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 1.9e-116 422.9 275 73.5
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 1.9e-116 422.9 266 77.4
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.5e-116 422.5 266 75.9
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 2.5e-116 422.5 267 74.9
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 1.3e-115 420.2 270 75.6
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 2.2e-115 419.5 275 72.0
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.2e-115 419.5 275 72.0
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.2e-115 419.5 268 73.5
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 2.8e-115 419.1 286 71.3
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 4.8e-115 418.3 270 74.1
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 8.2e-115 417.5 268 72.8
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 2.4e-114 416.0 270 74.4
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 5.3e-114 414.8 274 72.3
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 6.9e-114 414.5 268 73.1
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 6.9e-114 414.5 275 70.5
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.5e-113 413.3 316 65.2
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.0e-113 412.9 267 73.8
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.6e-113 412.5 268 72.8
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 3.4e-113 412.1 265 73.6
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 3.4e-113 412.1 265 73.6
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 5.9e-113 411.4 289 69.6
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 7.7e-113 411.0 270 73.0
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 7.7e-113 411.0 247 78.1
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 7.7e-113 411.0 272 71.3
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 7.7e-113 411.0 263 74.5
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.3e-112 410.2 267 74.2
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 1.3e-112 410.2 271 71.6
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 2.2e-112 409.5 303 67.3
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.1e-111 407.1 270 72.6
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 1.9e-111 406.4 267 73.0
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 1.9e-111 406.4 271 72.3
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 2.5e-111 406.0 263 73.8
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.2e-111 405.6 275 69.5
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 7.2e-111 404.4 269 72.1
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 3.6e-110 402.1 268 71.3
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 6.1e-110 401.4 268 71.3
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 1.0e-109 400.6 274 70.4
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 2.3e-109 399.4 270 72.2
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 3.0e-109 399.1 261 73.6
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 5.7e-108 394.8 273 71.4
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 2.2e-107 392.9 270 71.1
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 2.8e-107 392.5 326 62.6
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 3.7e-107 392.1 261 72.0
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 3.7e-107 392.1 261 70.1
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 6.3e-107 391.3 263 71.9
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 6.3e-107 391.3 276 69.6
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 8.2e-107 391.0 266 70.7
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 2.4e-106 389.4 262 71.4
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 3.1e-106 389.0 318 61.0
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 3.1e-106 389.0 263 71.1
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 3.1e-106 389.0 271 68.3
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 6.9e-106 387.9 273 68.5
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 2.0e-105 386.3 263 71.1
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 3.4e-105 385.6 273 70.0
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 3.4e-105 385.6 271 70.5
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 3.4e-105 385.6 292 65.8
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 3.4e-105 385.6 292 65.8
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 1.0e-104 384.0 291 65.3
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 1.3e-104 383.6 271 70.1
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 2.2e-104 382.9 270 70.4
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 2.9e-104 382.5 270 70.4
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 7.2e-103 377.9 271 69.4
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 7.2e-103 377.9 247 71.7
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 1.2e-102 377.1 253 70.4
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 2.1e-102 376.3 256 68.8
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 2.1e-102 376.3 265 70.9
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 3.6e-102 375.6 271 68.6
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 3.6e-102 375.6 252 71.0
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.3e-99 367.1 265 67.5
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 2.0e-97 359.8 260 68.5
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 2.6e-97 359.4 266 64.7
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 4.5e-97 358.6 267 66.7
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 1.6e-94 350.1 215 77.7
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 3.6e-94 349.0 256 67.2
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 6.1e-94 348.2 277 64.6
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 1.4e-93 347.1 267 64.4
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 7.4e-92 341.3 211 73.9
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 5.9e-89 331.6 289 58.8
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 2.9e-88 329.3 304 57.9
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 3.8e-88 328.9 248 64.1
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.1e-87 327.4 290 57.2
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 2.5e-87 326.2 275 61.1
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 4.2e-87 325.5 231 68.8
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 3.0e-85 319.3 295 58.6
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 2.6e-84 316.2 260 60.8
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 1.7e-83 313.5 260 60.0
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 6.3e-83 311.6 285 57.5
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 9.1e-82 307.8 267 58.8
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 4.5e-81 305.4 288 58.3
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.3e-80 303.9 284 60.6
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 2.9e-80 302.8 284 60.2
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.5e-79 299.7 284 59.5
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 5.5e-79 298.5 200 70.5
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.2e-78 297.4 275 54.5
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.1e-78 296.6 290 58.6
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 8.0e-78 294.7 288 57.6
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 8.8e-77 291.2 250 58.8
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 3.4e-76 289.3 279 55.6
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 4.1e-74 282.3 303 54.8
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 3.8e-72 275.8 337 49.0
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.9e-71 273.5 198 64.1
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 6.8e-69 265.0 193 66.3
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 5.9e-65 251.9 269 49.8
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 3.6e-62 242.7 147 80.3
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 5.8e-60 235.3 258 47.7
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 6.6e-56 221.9 256 46.9
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 4.3e-55 219.2 266 45.9
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 2.8e-54 216.5 242 50.8
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 3.6e-54 216.1 135 74.1
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.0e-52 210.3 276 43.5
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 1.1e-50 204.5 150 69.3
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 2.5e-47 193.4 252 40.5
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 3.6e-46 189.5 161 57.8
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 6.2e-46 188.7 210 44.8
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 1.1e-45 188.0 114 79.8
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 4.9e-43 179.1 261 42.5
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.9e-39 167.2 287 35.5
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 3.1e-37 159.8 208 42.8
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 9.9e-36 154.8 223 39.0
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 3.2e-34 149.8 206 43.7
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 6.0e-33 145.6 242 37.6
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 1.3e-30 137.9 89 74.2
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 6.2e-30 135.6 281 31.3
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 4.6e-25 119.4 77 74.0
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 4.6e-25 119.4 77 74.0
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 1.0e-24 118.2 77 72.7
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 8.7e-24 115.2 380 25.8
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.1e-23 114.8 219 33.8
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.9e-23 114.0 215 33.5
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 9.6e-23 111.7 84 65.5
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 9.0e-21 105.1 311 28.9
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 7.6e-20 102.1 213 34.3
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.9e-18 97.4 164 36.0
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.4e-18 97.1 158 39.9
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 2.1e-17 94.0 114 39.5
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 2.1e-17 94.0 106 38.7
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 1.3e-16 91.3 63 69.8
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 3.9e-16 89.7 246 26.8
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 1.9e-07 60.8 80 47.5


User provided reference genes

Program Settings