Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 3814.2 1914 100.0
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 3484.1 1907 92.9
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 3180.6 1897 85.2
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 3177.9 1897 85.1
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 3169.4 1900 84.5
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 3156.7 1900 84.4
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2077.8 1930 58.1
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2031.5 1934 56.9
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 1954.9 1934 56.0
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1835.1 1953 52.2
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 1802.3 1924 51.5
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1789.6 1934 51.2
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1788.5 1964 51.0
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1786.2 1954 51.1
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 1748.8 1938 51.1
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1746.5 1958 50.1
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1729.5 1926 51.5
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 1723.4 1975 49.6
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 1717.2 1932 50.7
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 1704.1 1945 48.7
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 1698.7 1930 50.1
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1692.2 1925 50.0
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1686.4 1934 49.8
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1682.2 1940 48.6
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 1681.8 1939 49.0
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1680.6 1948 48.8
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1679.5 1937 49.8
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 1674.8 1941 49.5
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1671.0 1930 49.0
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1654.4 1944 48.1
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1651.7 1956 49.0
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1648.3 1931 49.0
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1646.3 1940 49.2
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 1645.6 1960 48.4
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1639.4 1938 48.2
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1632.5 1962 48.6
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 1621.3 1960 48.4
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1619.4 1936 47.6
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1611.3 1960 47.3
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1610.5 1922 50.2
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1600.9 1943 48.1
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1596.6 1939 47.2
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1581.6 1939 47.0
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1577.4 1957 47.9
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1575.5 1959 46.4
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1568.9 1920 47.3
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1557.0 1946 45.8
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1556.6 1948 46.5
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1549.3 1946 46.2
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1548.9 1942 46.6
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1543.9 1942 46.2
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1525.4 1940 46.6
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1517.7 1930 46.5
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1509.2 1959 45.7
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1509.2 1923 45.9
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1508.8 1946 45.5
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1503.8 1901 47.2
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1501.1 1937 45.8
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1500.7 1949 45.5
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1498.0 1941 45.7
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1483.8 1939 45.1
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1481.1 1926 45.3
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1477.6 1970 45.0
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1460.3 1890 46.9
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1454.1 2012 44.9
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1444.5 1925 45.4
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1439.1 1967 44.7
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1427.5 1918 45.5
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1425.2 1849 45.1
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1424.8 1961 43.7
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1422.5 2001 43.1
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1412.5 1918 44.6
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1404.4 1954 43.6
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1367.4 1743 46.7
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1365.5 1918 43.5
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1364.7 1917 43.7
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1359.4 1914 43.3
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1354.3 1914 43.4
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1353.2 1745 46.8
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1352.0 1930 43.6
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1348.2 1919 42.6
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1347.0 1928 43.1
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1343.6 1935 43.5
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1339.7 1936 43.3
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1332.0 1936 43.0
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1331.2 1936 43.0
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1330.9 1936 43.0
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1322.4 1935 42.9
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 0.0e+00 1226.1 1698 44.2
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1220.3 1802 41.9
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1209.1 1753 42.7
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1157.9 2000 38.8
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1150.6 1390 48.0
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1122.5 1390 47.3
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 4.3e-297 1025.8 1942 35.7
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 3.2e-284 983.0 1960 34.7
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 3.4e-270 936.4 1215 44.4
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 5.3e-255 885.9 2050 32.6
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 7.7e-238 828.9 1675 34.1
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 1.5e-209 734.9 1430 35.3
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 6.4e-208 729.6 2093 30.1
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 1.2e-182 645.6 1910 30.0
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 1.5e-180 638.6 2061 28.6
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 1.5e-148 532.3 1900 26.4
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 3.1e-146 524.6 592 49.8
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 5.7e-132 477.2 1137 32.4
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.6e-126 459.1 1662 27.1
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 5.0e-120 437.6 434 53.9
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 1.4e-117 429.5 1219 28.8
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.3e-115 422.9 355 63.1
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 2.3e-104 385.6 314 59.2
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 8.6e-104 383.6 258 74.8
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 9.9e-92 343.6 304 54.6
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 2.3e-80 305.8 189 77.2
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.6e-78 298.5 210 69.0
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 1.5e-76 293.1 261 60.9
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 6.6e-72 277.7 186 70.4
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 4.3e-71 275.0 188 70.2
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 9.6e-71 273.9 505 36.8
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 4.8e-62 245.0 217 60.4
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 4.5e-52 211.8 309 41.1
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 1.0e-51 210.7 190 55.8
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 1.2e-49 203.8 180 57.2
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 4.1e-45 188.7 323 39.9
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 3.0e-32 146.0 291 33.3
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-32 145.2 584 25.2
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 4.4e-31 142.1 83 79.5
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 6.3e-30 138.3 226 36.7
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 1.0e-27 131.0 275 32.4
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 8.0e-25 121.3 67 85.1
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 1.8e-24 120.2 67 83.6
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 5.7e-23 115.2 65 87.7
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 4.8e-22 112.1 64 84.4
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 4.1e-21 109.0 325 25.8
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.7e-19 103.6 88 59.1
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 2.2e-19 103.2 145 44.8
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 8.5e-19 101.3 102 46.1
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 1.5e-18 100.5 62 71.0
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 1.5e-15 90.5 56 80.4
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 1.1e-13 84.3 128 42.2
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 5.4e-13 82.0 55 74.5
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 8.0e-09 68.2 68 52.9
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 1.2e-07 64.3 46 63.0


User provided reference genes

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