Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 9.1e-73 277.3 200 100.0
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 2.2e-63 246.1 200 93.0
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 1.1e-57 227.3 201 78.6
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 3.1e-57 225.7 201 78.1
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 7.0e-57 224.6 201 78.1
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 3.6e-45 185.7 201 73.6
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 3.8e-39 165.6 204 55.9
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 9.5e-38 161.0 200 64.0
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 6.1e-37 158.3 200 54.5
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 4.0e-36 155.6 205 49.8
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 8.9e-36 154.5 205 49.8
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 5.8e-35 151.8 201 59.2
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 2.2e-34 149.8 190 50.5
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 8.3e-34 147.9 158 51.3
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 1.8e-33 146.7 193 47.7
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 3.5e-32 142.5 199 43.2
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 6.0e-32 141.7 197 48.7
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 1.3e-31 140.6 156 52.6
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 3.0e-31 139.4 193 56.5
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 2.5e-30 136.3 155 69.0
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 3.3e-30 136.0 157 51.6
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 4.3e-30 135.6 185 44.3
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 5.6e-30 135.2 200 42.5
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 5.6e-30 135.2 195 43.6
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 9.5e-30 134.4 151 52.3
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 9.5e-30 134.4 151 53.0
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 1.2e-29 134.0 159 48.4
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 1.2e-29 134.0 180 60.0
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 1.6e-29 133.7 173 46.2
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 1.6e-29 133.7 187 43.9
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 2.8e-29 132.9 157 49.7
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 2.8e-29 132.9 150 50.7
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 2.8e-29 132.9 159 52.2
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 3.6e-29 132.5 157 48.4
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 3.6e-29 132.5 201 44.3
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 4.7e-29 132.1 200 44.0
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 1.1e-28 131.0 159 61.6
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 1.1e-28 131.0 173 50.3
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 1.1e-28 131.0 168 46.4
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 1.1e-28 131.0 157 47.8
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 1.4e-28 130.6 178 64.0
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 1.8e-28 130.2 159 67.3
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 4.0e-28 129.0 181 45.9
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 8.9e-28 127.9 200 48.5
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 8.9e-28 127.9 202 48.5
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 8.9e-28 127.9 202 48.0
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 1.5e-27 127.1 201 41.8
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 2.6e-27 126.3 159 46.5
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 2.6e-27 126.3 191 52.9
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 7.5e-27 124.8 200 52.0
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 2.9e-26 122.9 195 41.5
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 3.7e-26 122.5 257 37.4
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 4.9e-26 122.1 199 51.8
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 4.9e-26 122.1 201 41.3
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 4.9e-26 122.1 201 41.3
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 8.3e-26 121.3 200 40.5
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 1.1e-25 120.9 152 68.4
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 1.1e-25 120.9 152 68.4
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 1.1e-25 120.9 201 39.8
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 1.1e-25 120.9 159 45.9
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 1.4e-25 120.6 198 40.9
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 1.4e-25 120.6 159 55.3
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 1.9e-25 120.2 159 45.9
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 2.4e-25 119.8 201 40.8
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 2.4e-25 119.8 184 41.8
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 5.4e-25 118.6 159 45.3
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 1.2e-24 117.5 159 44.7
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 1.2e-24 117.5 152 47.4
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 1.2e-24 117.5 204 54.9
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 2.0e-24 116.7 153 45.8
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 3.5e-24 115.9 179 42.5
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 3.5e-24 115.9 158 46.2
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 6.0e-24 115.2 172 59.3
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 1.3e-23 114.0 157 44.6
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 1.7e-23 113.6 181 40.3
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 1.7e-23 113.6 181 40.3
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.7e-23 113.6 188 41.0
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 3.0e-23 112.8 197 39.1
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 3.9e-23 112.5 153 49.7
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 6.6e-23 111.7 154 45.5
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 1.1e-22 110.9 159 43.4
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 1.9e-22 110.2 149 45.6
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 3.3e-22 109.4 154 45.5
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.6e-22 108.6 188 41.0
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 1.6e-21 107.1 200 54.5
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 2.1e-21 106.7 159 46.5
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 2.1e-21 106.7 181 44.2
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 6.2e-21 105.1 205 52.7
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 6.2e-21 105.1 159 62.3
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 8.1e-21 104.8 176 40.3
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 1.1e-20 104.4 156 42.9
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 1.1e-20 104.4 196 54.6
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 1.4e-20 104.0 181 43.6
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 4.0e-20 102.4 181 43.1
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 5.2e-20 102.1 218 36.2
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 6.8e-20 101.7 159 55.3
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 1.2e-19 100.9 201 48.3
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 1.2e-19 100.9 204 42.2
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.5e-19 100.5 153 42.5
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.5e-19 100.5 177 39.5
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.5e-19 100.5 177 39.5
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 2.0e-19 100.1 159 61.0
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 7.5e-19 98.2 151 47.0
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 3.7e-18 95.9 201 53.7
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 4.9e-18 95.5 124 59.7
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 6.4e-18 95.1 156 37.8
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 4.1e-17 92.4 109 50.5
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 7.1e-17 91.7 149 38.9
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 1.6e-16 90.5 210 33.8
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 7.8e-16 88.2 158 51.9
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 7.8e-16 88.2 159 36.5
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 8.6e-15 84.7 189 37.0
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 1.1e-14 84.3 150 60.0
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 1.9e-14 83.6 203 50.2
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 2.5e-14 83.2 186 33.9
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 5.6e-14 82.0 94 56.4
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 5.6e-14 82.0 94 56.4
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 9.5e-14 81.3 200 43.0
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 1.2e-13 80.9 159 44.0
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 2.1e-13 80.1 158 48.1
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 4.0e-12 75.9 108 47.2
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 4.0e-12 75.9 112 46.4
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 4.4e-11 72.4 67 56.7
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.7e-10 70.5 57 66.7
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 1.7e-10 70.5 111 44.1
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 2.2e-10 70.1 162 35.2
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 2.9e-10 69.7 151 48.3
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 2.4e-09 66.6 156 50.0
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 4.1e-09 65.9 151 29.1
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 5.4e-09 65.5 102 74.5
Lj3P401T12 Lonicera japonica HOM05D005061 ORTHO05D006001 1.2e-08 64.3 42 66.7
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 2.1e-08 63.5 102 42.2
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 2.7e-08 63.2 61 50.8
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 3.5e-08 62.8 102 64.7
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 1.7e-07 60.5 64 60.9
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 1.1e-06 57.8 51 54.9
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 3.3e-06 56.2 51 60.8


User provided reference genes

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