Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 3.2e-273 944.5 478 100.0
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 5.4e-233 810.8 466 90.3
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 1.6e-184 649.8 410 84.4
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 2.0e-182 642.9 410 83.7
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 7.0e-180 634.4 439 77.2
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 1.5e-150 537.0 412 70.4
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 3.4e-150 535.8 410 69.3
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 2.3e-146 523.1 394 70.8
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 3.0e-146 522.7 413 68.3
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 1.1e-145 520.8 409 68.2
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 2.5e-145 519.6 416 67.5
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 5.2e-143 511.9 416 66.8
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 1.5e-142 510.4 412 66.7
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 2.0e-142 510.0 413 66.3
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 9.9e-142 507.7 411 67.4
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 9.9e-142 507.7 411 67.4
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 2.2e-141 506.5 416 68.3
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 2.9e-141 506.1 415 67.5
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 4.9e-141 505.4 412 67.0
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 4.1e-140 502.3 413 65.6
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 2.7e-139 499.6 444 62.8
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 1.0e-138 497.7 417 66.2
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 1.7e-138 496.9 408 65.9
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 3.9e-138 495.7 420 64.5
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 6.6e-138 495.0 382 68.8
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 1.5e-137 493.8 403 66.5
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.9e-137 493.4 419 64.4
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 4.3e-137 492.3 430 63.3
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 9.6e-137 491.1 410 65.9
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 1.1e-135 487.6 420 64.3
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 1.8e-135 486.9 411 64.2
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 3.1e-135 486.1 399 66.4
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 4.0e-135 485.7 411 64.2
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 5.2e-135 485.3 413 63.9
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 8.9e-135 484.6 411 65.2
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 8.9e-135 484.6 423 64.1
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 1.2e-134 484.2 414 64.5
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 1.2e-134 484.2 408 64.5
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 2.0e-134 483.4 416 63.7
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 2.6e-134 483.0 411 64.5
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 3.4e-134 482.6 438 62.3
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 3.4e-134 482.6 375 68.3
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 3.4e-134 482.6 409 65.3
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 9.9e-134 481.1 415 64.3
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 2.2e-133 479.9 400 66.0
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.9e-133 478.8 393 68.2
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 4.9e-133 478.8 407 64.9
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 8.4e-133 478.0 390 66.4
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 1.1e-132 477.6 399 64.2
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.4e-132 477.2 392 67.3
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 1.9e-132 476.9 409 63.6
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.4e-132 476.5 379 69.1
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 2.4e-132 476.5 495 56.0
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 4.2e-132 475.7 427 63.0
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 2.7e-131 473.0 415 63.4
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 4.6e-131 472.2 400 65.2
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 7.8e-131 471.5 406 64.5
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 2.3e-130 469.9 417 61.9
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 3.0e-130 469.5 410 65.4
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 3.9e-130 469.2 417 61.9
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 3.9e-130 469.2 421 62.2
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 3.9e-130 469.2 377 66.8
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 8.7e-130 468.0 400 64.2
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 8.7e-130 468.0 437 62.9
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.1e-129 467.6 410 65.1
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.5e-129 467.2 392 67.3
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 1.9e-129 466.8 380 66.6
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 1.9e-129 466.8 479 56.2
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 7.3e-129 464.9 426 61.5
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.6e-128 463.8 400 64.5
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 4.8e-128 462.2 419 63.7
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.0e-127 459.1 398 63.8
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 4.0e-127 459.1 398 63.8
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 3.4e-126 456.1 405 64.4
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 7.6e-126 454.9 395 64.8
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 1.3e-125 454.1 376 64.6
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 1.7e-125 453.8 377 63.9
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 1.1e-124 451.1 374 64.2
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 1.4e-124 450.7 410 62.0
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 3.2e-124 449.5 377 67.1
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.6e-123 447.2 374 65.2
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.6e-123 447.2 377 64.7
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 2.1e-123 446.8 375 62.7
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 3.5e-123 446.0 376 63.0
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 6.0e-123 445.3 349 67.6
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 1.0e-122 444.5 376 62.8
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 1.7e-122 443.7 421 60.3
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 3.0e-122 443.0 375 65.1
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 3.0e-122 443.0 414 59.9
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 1.1e-121 441.0 378 62.2
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 1.1e-121 441.0 378 62.2
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 1.1e-121 441.0 370 63.0
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 4.3e-121 439.1 404 60.6
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 4.8e-120 435.6 408 59.8
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 4.8e-120 435.6 411 61.6
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 4.8e-120 435.6 413 59.3
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 9.0e-119 431.4 376 62.2
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 4.5e-118 429.1 372 62.4
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 1.0e-114 417.9 411 58.4
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 3.0e-114 416.4 353 64.0
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 1.3e-112 411.0 386 61.4
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 1.3e-112 411.0 391 60.6
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 2.4e-111 406.8 430 56.0
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 5.8e-110 402.1 479 48.9
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 6.5e-109 398.7 331 66.2
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 4.2e-108 396.0 371 56.9
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 1.2e-107 394.4 336 63.7
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.6e-107 392.5 371 56.6
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 1.3e-106 391.0 371 56.6
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 1.1e-105 387.9 430 52.8
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.1e-105 387.9 371 56.3
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 1.1e-103 381.3 377 58.9
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.4e-103 380.9 378 55.8
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.8e-103 380.6 408 53.2
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 5.3e-103 379.0 379 56.7
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.9e-101 373.2 383 55.6
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 4.6e-99 365.9 420 52.1
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 2.4e-95 353.6 331 59.2
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 2.0e-94 350.5 306 63.4
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 4.5e-94 349.4 389 53.0
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.1e-92 344.7 392 54.3
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 2.1e-91 340.5 359 56.3
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 3.3e-89 333.2 343 55.4
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 2.8e-88 330.1 340 53.5
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 3.1e-87 326.6 340 52.6
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 5.9e-86 322.4 228 70.6
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 9.4e-84 315.1 345 53.6
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 2.3e-82 310.5 276 60.5
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 4.4e-81 306.2 340 52.4
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.2e-78 298.1 378 48.7
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 3.0e-74 283.5 301 53.5
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 5.2e-74 282.7 262 59.2
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 6.5e-69 265.8 296 52.0
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 2.9e-61 240.4 277 50.5
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 6.1e-59 232.6 280 52.5
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 2.3e-58 230.7 121 91.7
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 3.4e-57 226.9 238 50.8
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 6.3e-56 222.6 252 52.4
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 3.8e-53 213.4 206 58.3
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 1.6e-51 208.0 253 51.4
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 1.8e-47 194.5 195 54.9
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 3.3e-44 183.7 370 34.1
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 3.6e-35 153.7 129 65.9
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 1.9e-31 141.4 160 53.8
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 3.9e-29 133.7 111 69.4
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 6.6e-29 132.9 161 52.8
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 2.0e-25 121.3 86 73.3
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 4.6e-22 110.2 102 54.9
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 3.9e-21 107.1 167 43.7
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 1.1e-20 105.5 166 43.4
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.9e-20 104.8 58 89.7
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 2.4e-18 97.8 75 68.0
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 5.2e-18 96.7 78 66.7
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 4.4e-17 93.6 51 84.3
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 6.4e-16 89.7 143 41.3
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.9e-15 88.2 51 82.4
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 9.3e-15 85.9 51 80.4
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.7e-14 84.3 66 69.7
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 3.5e-14 84.0 55 74.5
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 7.8e-14 82.8 85 58.8
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 6.6e-13 79.7 51 76.5
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.1e-12 79.0 68 57.4
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 1.3e-11 75.5 79 51.9
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 1.7e-08 65.1 41 65.9
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 5.4e-07 60.1 69 59.4
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 9.3e-07 59.3 91 44.0
CDE02G0679 Ceratophyllum demersum HOM05D042044 ORTHO05D004670 1.6e-06 58.5 65 50.8


User provided reference genes

Program Settings