Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 5.0e-268 927.2 458 100.0
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.2e-178 629.4 429 75.8
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 1.6e-109 400.6 461 50.1
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 4.0e-100 369.4 540 43.5
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 6.4e-90 335.5 456 46.7
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 8.4e-90 335.1 456 46.7
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.1e-64 250.8 569 33.9
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.0e-63 248.4 534 35.0
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 1.4e-55 221.5 561 30.3
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 8.8e-55 218.8 587 29.8
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.6e-54 217.2 561 30.3
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 2.9e-50 203.8 584 29.5
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 1.7e-37 161.4 392 32.9
Nitab4.5_0000317g0090 Nicotiana tabacum HOM05D020480 ORTHO05D003486 6.6e-26 122.9 378 29.1
Nitab4.5_0003485g0040 Nicotiana tabacum HOM05D020480 ORTHO05D003486 7.2e-25 119.4 451 25.5
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 1.2e-24 118.6 439 27.8
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 9.8e-22 109.0 356 26.1
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 2.2e-21 107.8 360 27.5
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 3.1e-20 104.0 360 26.9
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 9.2e-20 102.4 481 22.9
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 2.9e-18 97.4 284 28.2
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 6.1e-16 89.7 213 30.0
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.0e-15 89.0 434 24.7
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.4e-15 88.6 380 26.1
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 1.8e-15 88.2 378 26.7
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 3.0e-15 87.4 437 23.8
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 4.0e-15 87.0 312 27.2
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 6.8e-15 86.3 114 41.2
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 8.9e-15 85.9 120 39.2
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 8.9e-15 85.9 374 25.7
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 8.9e-15 85.9 111 40.5
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 1.3e-13 82.0 432 22.9
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 1.7e-13 81.6 388 25.3
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 3.7e-13 80.5 113 37.2
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 4.9e-13 80.1 451 22.8
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 8.3e-13 79.3 416 22.8
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 8.3e-13 79.3 124 33.9
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 8.3e-13 79.3 131 32.8
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 8.3e-13 79.3 112 33.9
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.1e-12 79.0 114 39.5
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 1.4e-12 78.6 112 38.4
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 1.4e-12 78.6 112 33.9
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 4.1e-12 77.0 109 35.8
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 4.1e-12 77.0 404 24.0
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 4.1e-12 77.0 114 36.8
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 5.4e-12 76.6 109 39.4
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 5.4e-12 76.6 380 26.3
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 7.0e-12 76.3 126 34.1
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 9.2e-12 75.9 111 36.0
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 9.2e-12 75.9 120 35.0
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 1.2e-11 75.5 376 24.2
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 1.2e-11 75.5 405 24.7
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 1.2e-11 75.5 399 22.1
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 1.2e-11 75.5 389 24.2
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 2.0e-11 74.7 111 36.9
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 2.0e-11 74.7 391 25.1
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.7e-11 74.3 415 23.4
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 2.7e-11 74.3 405 25.2
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 3.5e-11 73.9 326 25.2
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 3.5e-11 73.9 119 31.1
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 7.8e-11 72.8 121 33.1
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 7.8e-11 72.8 119 36.1
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 1.3e-10 72.0 123 34.1
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 1.7e-10 71.6 423 25.1
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.3e-10 71.2 390 24.9
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.0e-10 70.9 402 23.6
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 3.0e-10 70.9 129 30.2
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 3.9e-10 70.5 117 30.8
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 5.0e-10 70.1 111 31.5
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 5.0e-10 70.1 110 34.5
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 6.6e-10 69.7 392 22.4
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 6.6e-10 69.7 117 32.5
Cc10_g13660 Coffea canephora HOM05D006236 ORTHO05D003486 6.6e-10 69.7 107 36.4
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 8.6e-10 69.3 399 23.8
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 8.6e-10 69.3 386 24.4
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 8.6e-10 69.3 128 33.6
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 8.6e-10 69.3 112 33.9
unitig_899.g14422 Utricularia gibba HOM05D006236 ORTHO05D003486 8.6e-10 69.3 64 43.8
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.1e-09 68.9 111 35.1
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 1.1e-09 68.9 131 31.3
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 1.1e-09 68.9 131 32.8
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 2.5e-09 67.8 109 33.9
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 2.5e-09 67.8 109 33.9
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 4.3e-09 67.0 111 36.0
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 5.6e-09 66.6 434 24.0
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 5.6e-09 66.6 109 33.9
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 7.3e-09 66.2 111 33.3
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 7.3e-09 66.2 109 33.9
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 9.5e-09 65.9 111 33.3
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 9.5e-09 65.9 113 33.6
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 9.5e-09 65.9 111 32.4
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.2e-08 65.5 110 32.7
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 2.1e-08 64.7 111 36.0
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 2.8e-08 64.3 111 33.3
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.8e-08 64.3 111 36.0
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.8e-08 64.3 111 36.0
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 3.6e-08 63.9 111 36.9
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 4.7e-08 63.5 110 35.5
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 4.7e-08 63.5 349 23.8
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 6.2e-08 63.2 110 34.5
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 6.2e-08 63.2 110 34.5
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 6.2e-08 63.2 110 35.5
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 6.2e-08 63.2 110 34.5
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 6.2e-08 63.2 416 23.8
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.4e-07 62.0 111 34.2
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 1.4e-07 62.0 111 33.3
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 1.4e-07 62.0 111 36.0
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.8e-07 61.6 113 31.9
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 1.8e-07 61.6 111 35.1
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 1.8e-07 61.6 108 34.3
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.3e-07 61.2 111 34.2
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 3.1e-07 60.8 389 22.1
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 3.1e-07 60.8 369 23.3
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 4.0e-07 60.5 439 23.0
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 5.2e-07 60.1 110 30.9
Sc04g0006040 Simmondsia chinensis HOM05D065149 ORTHO05D023414 5.2e-07 60.1 84 34.5
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 6.8e-07 59.7 112 34.8
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 8.9e-07 59.3 113 29.2
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 8.9e-07 59.3 113 29.2
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.2e-06 58.9 214 25.7
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 1.2e-06 58.9 131 26.7
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.2e-06 58.9 110 32.7
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 1.2e-06 58.9 108 30.6
TAR381G0115 Trochodendron aralioides HOM05D006236 ORTHO05D003486 1.5e-06 58.5 378 24.1
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 2.0e-06 58.2 112 29.5
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.0e-06 58.2 112 29.5
DCAR_014364 Daucus carota HOM05D006236 ORTHO05D003486 2.0e-06 58.2 58 44.8
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 2.6e-06 57.8 122 27.0
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 2.6e-06 57.8 109 33.9
Sc02g0004710 Simmondsia chinensis HOM05D065149 ORTHO05D023414 2.6e-06 57.8 62 38.7
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 3.4e-06 57.4 112 26.8
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.4e-06 57.4 214 26.2
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 4.4e-06 57.0 48 54.2
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 5.8e-06 56.6 97 34.0
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 5.8e-06 56.6 109 32.1
SEGI_27702 Sequoiadendron giganteum HOM05D002377 ORTHO05D003486 5.8e-06 56.6 109 32.1
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 9.8e-06 55.8 114 28.9
Peaxi162Scf00066g00424 Petunia axillaris HOM05D020480 ORTHO05D003486 9.8e-06 55.8 174 31.6


User provided reference genes

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