Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.3e-168 595.5 302 100.0
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.0e-160 570.1 305 95.1
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 8.7e-128 460.7 311 79.1
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 1.1e-127 460.3 287 83.6
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.4e-125 453.4 309 78.3
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 2.5e-122 442.6 298 78.2
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 2.0e-116 422.9 307 76.5
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 6.3e-102 374.8 299 66.9
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 4.1e-101 372.1 302 66.2
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 4.5e-100 368.6 299 65.9
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 5.9e-100 368.2 307 66.1
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.7e-99 366.7 220 79.5
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.7e-99 366.7 220 79.5
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 1.5e-98 363.6 247 73.7
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 1.5e-98 363.6 252 74.6
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 3.2e-98 362.5 291 65.3
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 4.7e-97 358.6 289 67.5
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 6.1e-97 358.2 268 69.4
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 8.0e-97 357.8 258 70.9
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 1.5e-95 353.6 268 67.2
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 2.0e-95 353.2 228 76.3
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 2.0e-95 353.2 273 68.5
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 2.8e-94 349.4 237 73.8
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 9.1e-93 344.4 232 75.4
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 1.6e-92 343.6 213 77.5
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 2.0e-92 343.2 223 74.9
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 1.0e-91 340.9 261 68.2
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.0e-91 340.9 247 68.4
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 1.7e-91 340.1 256 64.5
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 5.0e-91 338.6 260 68.1
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 1.1e-90 337.4 264 65.9
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 1.1e-90 337.4 264 67.4
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 2.5e-90 336.3 277 63.2
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.2e-90 335.9 252 67.1
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 4.2e-90 335.5 236 71.6
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 4.2e-90 335.5 272 65.4
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 7.2e-90 334.7 250 66.8
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 7.2e-90 334.7 238 68.5
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 1.2e-89 334.0 255 66.3
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.2e-89 334.0 268 65.7
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 2.1e-89 333.2 283 62.9
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 2.1e-89 333.2 273 64.8
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.6e-89 332.4 250 66.4
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 6.1e-89 331.6 283 62.9
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 1.0e-88 330.9 242 67.4
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.0e-88 330.9 253 67.6
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 2.3e-88 329.7 275 63.6
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 2.3e-88 329.7 277 63.9
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 3.0e-88 329.3 260 65.4
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 5.2e-88 328.6 222 73.9
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 8.8e-88 327.8 214 74.8
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 1.5e-87 327.0 274 64.6
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 2.0e-87 326.6 281 64.1
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 3.4e-87 325.9 220 72.7
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 4.4e-87 325.5 237 69.2
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 7.5e-87 324.7 271 63.1
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 7.5e-87 324.7 271 63.1
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 7.5e-87 324.7 232 71.6
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 9.8e-87 324.3 272 64.7
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 1.3e-86 323.9 258 65.1
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 1.7e-86 323.6 267 63.3
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 1.7e-86 323.6 232 71.6
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.7e-86 323.6 232 71.6
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 2.2e-86 323.2 256 65.6
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 2.2e-86 323.2 266 63.5
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 2.8e-86 322.8 241 67.2
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 4.9e-86 322.0 268 63.1
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 4.9e-86 322.0 213 71.4
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 1.4e-85 320.5 277 62.8
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.4e-85 320.5 265 64.9
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 3.1e-85 319.3 275 62.9
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 4.1e-85 318.9 272 62.9
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 5.4e-85 318.5 261 64.0
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 7.0e-85 318.2 259 64.1
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 9.1e-85 317.8 235 68.9
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 9.1e-85 317.8 215 73.5
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.6e-84 317.0 236 67.4
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 2.7e-84 316.2 271 63.5
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 2.7e-84 316.2 218 72.9
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 3.5e-84 315.8 277 59.2
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 3.5e-84 315.8 229 68.1
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 4.5e-84 315.5 223 69.5
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 5.9e-84 315.1 259 63.7
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 5.9e-84 315.1 259 63.7
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 5.9e-84 315.1 221 68.3
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 1.3e-83 313.9 255 65.1
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 1.3e-83 313.9 257 65.0
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 1.3e-83 313.9 255 65.1
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.3e-83 313.9 255 65.1
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 1.3e-83 313.9 257 65.0
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 1.3e-83 313.9 229 69.4
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 2.3e-83 313.2 220 70.0
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 2.9e-83 312.8 259 63.3
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 3.8e-83 312.4 248 66.1
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 3.8e-83 312.4 274 60.9
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 6.6e-83 311.6 269 62.8
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 6.6e-83 311.6 258 62.0
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 8.6e-83 311.2 256 64.8
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 1.1e-82 310.8 259 62.9
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.9e-82 310.1 270 60.7
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 2.5e-82 309.7 269 62.5
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 2.5e-82 309.7 268 63.1
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 4.2e-82 308.9 277 57.4
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 5.6e-82 308.5 226 70.4
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 5.6e-82 308.5 212 73.1
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 7.2e-82 308.1 217 70.5
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 2.8e-81 306.2 214 72.4
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 2.8e-81 306.2 271 60.9
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 6.1e-81 305.1 215 68.8
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 1.0e-80 304.3 189 80.4
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 1.0e-80 304.3 234 64.5
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 8.9e-80 301.2 262 60.7
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 2.0e-79 300.1 228 64.5
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 2.2e-78 296.6 265 56.6
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 3.7e-78 295.8 239 64.4
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 4.9e-78 295.4 268 59.7
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 4.9e-78 295.4 268 59.7
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 6.4e-78 295.0 268 60.1
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 8.3e-78 294.7 267 58.1
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 8.3e-78 294.7 268 57.5
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 4.6e-76 288.9 255 60.8
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 7.8e-76 288.1 249 62.2
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 1.3e-75 287.3 268 59.0
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 1.7e-75 287.0 268 59.0
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.3e-75 286.6 260 58.5
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 5.0e-75 285.4 260 58.5
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 6.6e-75 285.0 207 67.6
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.5e-74 283.9 277 58.5
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.2e-73 280.8 222 61.3
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 3.6e-73 279.3 202 70.8
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 6.2e-73 278.5 259 58.3
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 6.2e-73 278.5 178 76.4
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 2.3e-72 276.6 256 57.4
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 7.5e-71 271.6 236 57.2
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 7.5e-71 271.6 236 57.2
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 9.8e-71 271.2 183 74.3
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.3e-70 270.8 217 59.4
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 1.7e-70 270.4 236 56.8
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 1.7e-70 270.4 236 56.8
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 1.7e-70 270.4 236 56.8
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 2.9e-70 269.6 219 59.8
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 3.0e-67 259.6 225 63.1
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 5.0e-67 258.8 311 51.8
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 1.1e-64 251.1 198 63.1
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 1.9e-58 230.3 256 51.6
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 6.8e-56 221.9 296 46.6
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 1.2e-55 221.1 276 49.6
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 1.3e-54 217.6 197 54.8
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 3.7e-54 216.1 144 75.7
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.1e-53 214.5 236 50.4
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 1.1e-53 214.5 144 75.0
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 1.2e-52 211.1 133 76.7
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 2.6e-47 193.4 226 45.6
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 9.3e-45 184.9 287 40.4
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 6.0e-44 182.2 183 55.2
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 6.2e-41 172.2 201 52.7
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 4.6e-36 156.0 160 44.4
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 6.2e-33 145.6 112 71.4
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.5e-26 124.4 79 73.4
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 9.6e-18 95.1 110 45.5
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 6.9e-16 89.0 65 63.1
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 6.9e-16 89.0 73 60.3
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 5.0e-14 82.8 89 47.2
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 1.9e-10 70.9 66 48.5
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 2.6e-07 60.5 76 48.7
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 5.9e-07 59.3 34 76.5


User provided reference genes

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