Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 3.2e-139 498.4 252 100.0
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 9.8e-133 476.9 252 94.8
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 2.2e-124 449.1 250 88.0
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 6.4e-124 447.6 250 88.4
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 2.7e-122 442.2 250 86.4
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 1.0e-121 440.3 252 86.1
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 3.9e-121 438.3 252 86.9
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 8.6e-121 437.2 252 86.1
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 5.6e-120 434.5 252 85.7
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 3.6e-119 431.8 252 85.3
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 5.6e-104 381.3 206 93.7
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 1.3e-100 370.2 248 73.8
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 1.4e-99 366.7 249 74.3
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 1.9e-99 366.3 238 76.1
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 9.3e-99 364.0 234 76.9
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.7e-98 362.5 251 72.9
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 1.0e-97 360.5 233 76.8
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 3.0e-97 359.0 240 73.3
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 3.0e-97 359.0 239 73.2
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 1.5e-96 356.7 220 79.5
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 5.6e-96 354.8 251 72.1
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 7.4e-96 354.4 250 71.2
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.3e-95 353.6 250 72.0
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 2.1e-95 352.8 250 71.6
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 2.1e-95 352.8 229 75.1
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 2.8e-95 352.4 251 71.7
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 6.2e-95 351.3 238 73.5
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 6.2e-95 351.3 238 73.9
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 8.1e-95 350.9 232 73.3
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 8.1e-95 350.9 242 73.1
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 8.1e-95 350.9 240 72.1
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 8.1e-95 350.9 239 72.8
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 8.1e-95 350.9 239 72.4
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.1e-94 350.5 251 71.3
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 1.4e-94 350.1 239 72.4
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 1.8e-94 349.7 250 72.4
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.8e-94 349.7 250 72.4
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 6.9e-94 347.8 239 72.0
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 9.0e-94 347.4 239 71.1
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 2.0e-93 346.3 241 72.2
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 2.6e-93 345.9 246 70.3
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 2.6e-93 345.9 214 78.0
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 3.4e-93 345.5 206 81.1
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 3.4e-93 345.5 203 81.3
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 3.4e-93 345.5 239 72.0
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 3.4e-93 345.5 249 69.5
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 5.8e-93 344.7 238 72.7
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 7.6e-93 344.4 238 71.8
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 1.3e-92 343.6 220 76.4
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 1.3e-92 343.6 229 73.8
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.2e-92 342.8 219 75.3
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 2.2e-92 342.8 240 70.0
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 2.9e-92 342.4 204 81.4
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 2.9e-92 342.4 231 72.3
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 2.9e-92 342.4 231 74.9
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 3.8e-92 342.0 228 74.1
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 3.8e-92 342.0 218 77.5
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 3.8e-92 342.0 208 78.4
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 6.4e-92 341.3 208 78.4
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 8.4e-92 340.9 208 78.4
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 2.5e-91 339.3 240 71.7
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.5e-91 339.3 210 79.5
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 3.2e-91 339.0 238 70.2
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 3.2e-91 339.0 237 70.9
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 4.2e-91 338.6 251 67.3
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 4.2e-91 338.6 225 73.8
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 5.5e-91 338.2 208 77.9
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 7.1e-91 337.8 210 78.1
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 9.3e-91 337.4 204 77.9
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 1.2e-90 337.0 221 74.7
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 4.6e-90 335.1 227 73.1
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 4.6e-90 335.1 216 75.0
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 1.0e-89 334.0 204 78.9
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 1.0e-89 334.0 228 73.2
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 1.0e-89 334.0 250 66.0
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.3e-89 332.8 239 68.6
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 3.0e-89 332.4 234 69.7
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 5.1e-89 331.6 243 70.4
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 6.7e-89 331.3 243 70.0
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 8.7e-89 330.9 243 70.0
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 1.1e-88 330.5 249 67.1
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 1.5e-88 330.1 244 68.4
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 2.5e-88 329.3 221 71.9
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 2.5e-88 329.3 239 69.0
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 7.4e-88 327.8 204 76.5
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 2.8e-87 325.9 233 67.8
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 2.8e-87 325.9 243 64.6
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 6.2e-87 324.7 223 71.7
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 6.2e-87 324.7 241 67.6
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 1.4e-86 323.6 233 67.8
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 2.4e-86 322.8 248 65.7
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 6.9e-86 321.2 241 67.6
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 6.9e-86 321.2 234 66.7
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 1.2e-85 320.5 249 64.3
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.2e-85 320.5 249 63.5
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.5e-85 320.1 249 63.5
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 1.5e-85 320.1 251 64.1
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 2.0e-85 319.7 241 67.2
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 1.3e-84 317.0 234 68.8
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 1.3e-84 317.0 241 66.4
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.1e-83 313.9 210 75.2
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 2.5e-83 312.8 210 74.8
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.7e-82 309.3 193 77.2
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 7.9e-82 307.8 216 70.4
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.2e-79 299.7 211 70.1
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 3.7e-79 298.9 226 65.5
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 1.5e-77 293.5 178 84.3
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 2.6e-77 292.7 206 68.4
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 2.2e-76 289.7 197 71.6
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.9e-75 286.6 249 61.0
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 3.2e-75 285.8 221 62.0
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 3.6e-74 282.3 207 64.7
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 3.0e-73 279.3 237 60.3
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 1.7e-71 273.5 209 62.2
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 6.9e-70 268.1 206 63.1
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.4e-65 253.8 179 72.6
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.1e-64 250.8 168 74.4
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 1.1e-62 244.2 206 57.8
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 5.0e-60 235.3 211 56.4
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 6.7e-57 224.9 205 53.2
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 7.4e-56 221.5 214 53.7
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 1.7e-52 210.3 209 52.2
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 4.2e-51 205.7 119 79.0
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 1.2e-50 204.1 243 44.4
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.1e-50 203.4 173 60.7
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 8.8e-49 198.0 167 62.9
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 1.3e-47 194.1 240 38.8
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 7.7e-45 184.9 109 79.8
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 7.7e-37 158.3 212 39.6
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 5.7e-32 142.1 102 68.6
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.7e-31 140.6 130 59.2
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.2e-29 134.4 103 68.0
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 3.3e-27 126.3 104 60.6
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 5.6e-27 125.6 88 72.7
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 1.1e-22 111.3 154 38.3
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 3.1e-17 93.2 61 78.7
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 1.3e-12 77.8 247 31.2
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 5.1e-12 75.9 69 58.0
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 5.6e-11 72.4 44 77.3
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 2.2e-07 60.5 60 56.7


User provided reference genes

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