Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 3.9e-131 471.5 237 100.0
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.4e-104 382.5 217 91.2
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 4.5e-79 298.5 217 71.9
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 7.7e-79 297.7 217 72.4
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 1.7e-78 296.6 217 71.4
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 3.2e-77 292.4 217 71.4
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 3.2e-77 292.4 217 71.4
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 1.7e-73 280.0 217 68.2
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.7e-63 246.1 148 85.8
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.3e-51 206.5 182 65.9
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 5.2e-51 205.3 219 51.6
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 5.4e-48 195.3 218 48.6
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.6e-47 193.7 220 48.6
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 4.5e-47 192.2 220 48.2
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 1.6e-44 183.7 218 46.3
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 9.8e-42 174.5 237 44.3
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 9.8e-42 174.5 219 44.7
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 9.8e-42 174.5 219 47.0
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.0e-38 164.5 220 45.0
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 5.0e-38 162.2 219 43.4
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 1.1e-37 161.0 195 46.2
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.2e-36 157.5 220 41.8
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 1.6e-36 157.1 217 43.8
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 3.6e-36 156.0 218 43.6
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 3.6e-36 156.0 218 42.2
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 1.8e-35 153.7 221 42.1
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 1.8e-35 153.7 217 41.9
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 8.9e-35 151.4 219 42.0
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 1.5e-34 150.6 220 41.4
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 2.0e-34 150.2 221 40.7
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 2.6e-34 149.8 221 41.6
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 4.4e-34 149.1 220 42.3
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 7.5e-34 148.3 231 41.1
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 9.8e-34 147.9 217 41.9
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 2.2e-33 146.7 219 40.6
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 3.7e-33 146.0 220 41.4
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.4e-32 144.1 222 38.7
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 3.2e-32 142.9 221 42.5
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 4.1e-32 142.5 220 39.5
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.2e-31 141.0 218 40.8
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 2.7e-31 139.8 219 40.2
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 4.6e-31 139.0 219 40.2
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 6.0e-31 138.7 219 40.2
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 6.0e-31 138.7 226 37.6
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 7.8e-31 138.3 218 41.7
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 7.8e-31 138.3 221 42.5
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 1.0e-30 137.9 219 40.2
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.7e-30 137.1 222 41.4
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 3.9e-30 136.0 214 39.3
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 6.6e-30 135.2 220 39.1
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 6.6e-30 135.2 218 39.9
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 1.1e-29 134.4 222 38.7
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 4.3e-29 132.5 217 40.6
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 5.6e-29 132.1 224 37.9
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 7.3e-29 131.7 218 35.8
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 1.2e-28 131.0 218 39.4
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 3.6e-28 129.4 218 37.6
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 6.2e-28 128.6 220 37.7
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 8.1e-28 128.3 190 41.6
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 8.1e-28 128.3 234 37.6
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 1.8e-27 127.1 217 36.9
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 2.3e-27 126.7 220 35.5
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 2.3e-27 126.7 219 38.8
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 3.1e-27 126.3 219 36.1
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 3.1e-27 126.3 219 36.1
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 2.0e-26 123.6 221 38.0
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 2.0e-26 123.6 217 37.3
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 2.0e-26 123.6 217 35.5
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 3.4e-26 122.9 233 35.6
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.4e-26 122.9 223 36.8
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.4e-26 122.9 223 38.1
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 3.4e-26 122.9 217 38.7
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 3.4e-26 122.9 221 36.7
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 4.4e-26 122.5 218 40.4
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 5.8e-26 122.1 217 38.2
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 2.2e-25 120.2 218 35.8
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 2.9e-25 119.8 219 38.8
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 4.9e-25 119.0 219 35.2
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 4.9e-25 119.0 221 38.5
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 6.4e-25 118.6 221 38.0
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 6.4e-25 118.6 223 36.3
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 6.4e-25 118.6 188 38.8
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 6.4e-25 118.6 220 36.8
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 6.4e-25 118.6 222 36.5
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 8.3e-25 118.2 228 35.5
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 1.1e-24 117.9 219 40.6
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 1.9e-24 117.1 219 37.9
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 3.2e-24 116.3 218 37.2
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 7.1e-24 115.2 231 34.6
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 9.2e-24 114.8 220 35.0
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 1.6e-23 114.0 251 35.1
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.6e-23 114.0 222 36.9
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.6e-23 114.0 222 36.9
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 2.1e-23 113.6 218 35.8
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 2.1e-23 113.6 218 39.0
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 2.1e-23 113.6 220 35.9
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 2.7e-23 113.2 218 36.7
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 3.5e-23 112.8 220 34.1
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 6.0e-23 112.1 218 35.3
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 7.8e-23 111.7 219 35.6
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 7.8e-23 111.7 220 35.0
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.0e-22 111.3 219 34.7
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.7e-22 110.5 216 35.6
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 5.1e-22 109.0 218 38.1
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 5.1e-22 109.0 220 35.0
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 8.6e-22 108.2 219 35.6
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 8.6e-22 108.2 236 32.6
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 1.1e-21 107.8 212 34.9
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 1.5e-21 107.5 218 36.2
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 2.5e-21 106.7 218 38.5
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 3.3e-21 106.3 218 38.5
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.3e-21 106.3 212 35.8
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 4.3e-21 105.9 220 35.0
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 7.3e-21 105.1 219 36.5
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 7.3e-21 105.1 158 39.9
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 9.6e-21 104.8 218 37.6
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 1.2e-20 104.4 223 35.0
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 1.2e-20 104.4 227 37.0
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 1.6e-20 104.0 219 37.9
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.6e-20 104.0 224 36.6
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.6e-20 104.0 212 34.9
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 4.7e-20 102.4 214 35.0
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 6.2e-20 102.1 223 36.3
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 6.2e-20 102.1 223 35.4
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 6.2e-20 102.1 224 32.1
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 1.1e-19 101.3 217 35.0
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.4e-19 100.9 213 32.9
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 5.2e-19 99.0 221 32.1
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 6.8e-19 98.6 188 35.1
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 8.9e-19 98.2 184 34.2
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 3.4e-18 96.3 223 35.0
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.4e-18 96.3 217 35.0
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 7.6e-18 95.1 224 30.8
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 4.9e-17 92.4 219 35.2
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 1.1e-16 91.3 219 35.2
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 9.3e-16 88.2 232 29.3
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 2.1e-15 87.0 222 31.1
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 8.7e-14 81.6 172 33.1
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 1.1e-13 81.3 108 41.7
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 2.5e-13 80.1 220 30.0
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 1.3e-12 77.8 180 31.1
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 1.4e-11 74.3 184 30.4
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 3.4e-10 69.7 95 43.2
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 2.7e-07 60.1 147 32.0
ATR1154G039 Amborella trichopoda HOM05D003892 ORTHO05D004522 4.6e-07 59.3 150 30.0
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 1.0e-06 58.2 66 51.5


User provided reference genes

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