Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003416g0030 Nicotiana tabacum HOM05D006137 ORTHO05D007697 2.1e-225 785.4 403 100.0
Nitab4.5_0002190g0020 Nicotiana tabacum HOM05D006137 ORTHO05D007697 3.3e-191 671.8 379 92.1
PGSC0003DMG400014792 Solanum tuberosum HOM05D006137 ORTHO05D007697 9.4e-178 627.1 380 86.3
Sopen08g024990 Solanum pennellii HOM05D006137 ORTHO05D007697 3.6e-177 625.2 385 84.7
Solyc08g076410.4 Solanum lycopersicum HOM05D006137 ORTHO05D007697 1.0e-176 623.6 390 84.4
Peaxi162Scf00170g00615 Petunia axillaris HOM05D006137 ORTHO05D007697 5.9e-172 607.8 386 81.9
CAN.G726.20 Capsicum annuum HOM05D006137 ORTHO05D007697 4.7e-169 598.2 380 81.1
Dinv25255 Davidia involucrata HOM05D006137 ORTHO05D007697 3.0e-131 472.6 384 65.4
Cc08_g03270 Coffea canephora HOM05D006137 ORTHO05D007697 4.4e-127 458.8 366 64.2
CSS0021967 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 1.1e-125 454.1 393 61.3
Hma1.2p1_1027F.1_g249480 Hydrangea macrophylla HOM05D006137 ORTHO05D007697 3.5e-124 449.1 377 62.9
Gorai.008G224300 Gossypium raimondii HOM05D006137 ORTHO05D007697 2.0e-119 433.3 380 61.1
Gohir.D12G208800 Gossypium hirsutum HOM05D006137 ORTHO05D007697 2.6e-119 433.0 380 60.8
Oeu017078.1 Olea europaea HOM05D006137 ORTHO05D007697 7.6e-119 431.4 307 71.0
TAR629G2895 Trochodendron aralioides HOM05D006137 ORTHO05D007697 2.9e-118 429.5 381 59.6
Gohir.A12G206400 Gossypium hirsutum HOM05D006137 ORTHO05D007697 3.2e-117 426.0 381 59.8
MELO3C013825.2 Cucumis melo HOM05D006137 ORTHO05D007697 4.2e-117 425.6 376 61.4
Thecc.03G309800 Theobroma cacao HOM05D006137 ORTHO05D007697 1.6e-116 423.7 377 60.5
CsaV3_3G001380 Cucumis sativus L. HOM05D006137 ORTHO05D007697 3.5e-116 422.5 376 60.9
CSS0050317 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 4.6e-116 422.2 307 68.1
Duzib068G1414 Durio zibethinus HOM05D006137 ORTHO05D007697 6.0e-116 421.8 379 59.4
CiPaw.11G098100 Carya illinoinensis HOM05D006137 ORTHO05D007697 2.3e-115 419.9 378 59.5
Atru.chr6.1520 Acer truncatum HOM05D006137 ORTHO05D007697 6.6e-115 418.3 383 59.0
Nn3g19394 Nelumbo nucifera HOM05D006137 ORTHO05D007697 1.5e-114 417.2 373 58.7
Rhsim11G0021000 Rhododendron simsii HOM05D006137 ORTHO05D007697 3.3e-114 416.0 399 58.1
GSVIVG01013108001 Vitis vinifera HOM05D006137 ORTHO05D007697 3.3e-114 416.0 372 59.4
AT2G35500 Arabidopsis thaliana HOM05D006137 ORTHO05D007697 1.3e-113 414.1 377 56.8
BcaB06g28845 Brassica carinata HOM05D006137 ORTHO05D007697 1.6e-113 413.7 367 57.5
CARHR129650 Cardamine hirsuta HOM05D006137 ORTHO05D007697 2.8e-113 412.9 390 55.4
Potri.003G096600 Populus trichocarpa HOM05D006137 ORTHO05D007697 8.1e-113 411.4 378 58.7
FAN08G1929 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.4e-112 410.6 408 56.6
MSTRG.24846 Avicennia marina HOM05D006137 ORTHO05D007697 1.8e-112 410.2 399 55.4
AL4G31550 Arabidopsis lyrata HOM05D006137 ORTHO05D007697 2.4e-112 409.8 381 56.2
Carub.0004s1719 Capsella rubella HOM05D006137 ORTHO05D007697 2.4e-112 409.8 382 56.8
Thhalv10016768m.g Eutrema salsugineum HOM05D006137 ORTHO05D007697 3.1e-112 409.5 381 56.4
BraA04t18192Z Brassica rapa HOM05D006137 ORTHO05D007697 5.3e-112 408.7 377 55.7
C04p64320 Brassica napus HOM05D006137 ORTHO05D007697 6.9e-112 408.3 318 62.6
A04p26930 Brassica napus HOM05D006137 ORTHO05D007697 2.6e-111 406.4 377 55.4
BolC4t27919H Brassica oleracea HOM05D006137 ORTHO05D007697 2.6e-111 406.4 318 62.6
FvH4_5g23010 Fragaria vesca HOM05D006137 ORTHO05D007697 4.5e-111 405.6 315 65.4
Medtr5g029550 Medicago truncatula HOM05D006137 ORTHO05D007697 9.9e-111 404.4 375 58.4
Sp4g17720 Schrenkiella parvula HOM05D006137 ORTHO05D007697 9.9e-111 404.4 385 55.1
FAN04G0555 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.3e-110 404.1 382 57.3
Migut.A01172 Erythranthe guttata HOM05D006137 ORTHO05D007697 2.2e-110 403.3 373 60.6
Glyma.01G014900 Glycine max HOM05D006137 ORTHO05D007697 2.9e-110 402.9 371 58.0
TWI15G1160 Tripterygium wilfordii HOM05D006137 ORTHO05D007697 3.8e-110 402.5 389 56.3
COL.COLO4_16947 Corchorus olitorius HOM05D006137 ORTHO05D007697 4.9e-110 402.1 337 61.4
Phvul.002G137400 Phaseolus vulgaris HOM05D006137 ORTHO05D007697 1.4e-109 400.6 378 56.1
RcHm_v2.0_Chr7g0211741 Rosa chinensis HOM05D006137 ORTHO05D007697 1.9e-109 400.2 412 55.6
VMungo1215G0535 Vigna mungo HOM05D006137 ORTHO05D007697 1.9e-109 400.2 375 56.3
Ciclev10001458m.g Citrus clementina HOM05D006137 ORTHO05D007697 2.4e-109 399.8 323 62.2
FAN13G2862 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.4e-109 399.8 332 63.3
FAN18G2668 Fragaria x ananassa HOM05D006137 ORTHO05D007697 9.3e-109 397.9 303 66.3
PGR042G0393 Punica granatum HOM05D006137 ORTHO05D007697 1.6e-108 397.1 370 56.5
Lj3g0008594 Lotus japonicus HOM05D006137 ORTHO05D007697 2.7e-108 396.4 380 56.6
ClCG10G001310 Citrullus lanatus HOM05D006137 ORTHO05D007697 4.6e-108 395.6 440 52.5
FvH4_2g06760 Fragaria vesca HOM05D006137 ORTHO05D007697 4.6e-108 395.6 336 62.2
arahy.Tifrunner.gnm1.ann1.3JZK2J Arachis hypogaea HOM05D006137 ORTHO05D007697 7.9e-108 394.8 347 58.8
arahy.Tifrunner.gnm1.ann1.J91B8N Arachis hypogaea HOM05D006137 ORTHO05D007697 7.9e-108 394.8 347 58.8
HanXRQChr04g0098961 Helianthus annuus HOM05D006137 ORTHO05D007697 7.9e-108 394.8 356 57.9
DCAR_008226 Daucus carota HOM05D006137 ORTHO05D007697 1.0e-107 394.4 301 68.1
unitig_748.g7545 Utricularia gibba HOM05D006137 ORTHO05D007697 1.0e-107 394.4 357 59.1
Ah.09g233490 Amaranthus hybridus HOM05D006137 ORTHO05D007697 1.8e-107 393.7 370 58.9
Aqoxy2G03876 Aquilegia oxysepala HOM05D006137 ORTHO05D007697 1.8e-107 393.7 326 59.8
TPR.G19427 Trifolium pratense HOM05D006137 ORTHO05D007697 2.3e-107 393.3 376 55.9
Oeu019613.1 Olea europaea HOM05D006137 ORTHO05D007697 3.0e-107 392.9 314 64.3
BcaC02g07708 Brassica carinata HOM05D006137 ORTHO05D007697 3.9e-107 392.5 297 64.6
MD06G1026400 Malus domestica HOM05D006137 ORTHO05D007697 3.9e-107 392.5 316 63.0
Sabra03G0065200 Salix brachista HOM05D006137 ORTHO05D007697 1.6e-105 387.1 316 63.0
ECA233G6209 Erigeron canadensis HOM05D006137 ORTHO05D007697 2.8e-105 386.3 373 54.4
FAN18G2637 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.8e-105 386.3 429 52.4
Lalb_Chr09g0325501 Lupinus albus HOM05D006137 ORTHO05D007697 2.8e-105 386.3 343 58.0
CANSAT21G0809 Cannabis sativa HOM05D006137 ORTHO05D007697 4.8e-105 385.6 344 60.5
Sed0022354 Sechium edule HOM05D006137 ORTHO05D007697 4.8e-105 385.6 375 56.5
PSO782G3150 Papaver somniferum HOM05D006137 ORTHO05D007697 1.1e-104 384.4 320 60.0
CANSAT21G0548 Cannabis sativa HOM05D006137 ORTHO05D007697 2.4e-104 383.3 379 56.7
EL10Ac2g03238 Beta vulgaris HOM05D006137 ORTHO05D007697 3.1e-104 382.9 301 65.1
Psat2g138120 Pisum sativum HOM05D006137 ORTHO05D007697 1.5e-103 380.6 371 54.7
PSO063G4597 Papaver somniferum HOM05D006137 ORTHO05D007697 4.2e-101 372.5 323 58.5
Oeu019614.1 Olea europaea HOM05D006137 ORTHO05D007697 7.9e-100 368.2 303 62.7
Prupe.5G028300 Prunus persica HOM05D006137 ORTHO05D007697 1.8e-99 367.1 331 58.3
THA.LOC104814417 Tarenaya hassleriana HOM05D006137 ORTHO05D007697 3.0e-99 366.3 322 57.8
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 1.9e-98 363.6 334 58.1
Aa31LG9G15490 Aethionema arabicum HOM05D006137 ORTHO05D007697 2.8e-97 359.8 271 64.6
Sc24g0002950 Simmondsia chinensis HOM05D006137 ORTHO05D007697 8.2e-97 358.2 286 63.3
Os10g0577700 Oryza sativa ssp. japonica HOM05D006137 ORTHO05D007697 5.3e-96 355.5 373 49.1
Lsat_1_v5_gn_6_3681 Lactuca sativa HOM05D006137 ORTHO05D007697 1.5e-95 354.0 372 52.7
CDE06G2536 Ceratophyllum demersum HOM05D006137 ORTHO05D007697 4.5e-95 352.4 370 50.8
vmacro08163 Vaccinium macrocarpon HOM05D006137 ORTHO05D007697 1.0e-94 351.3 272 65.1
HPP92_014848 Vanilla planifolia HOM05D006137 ORTHO05D007697 1.4e-93 347.4 335 53.1
QL12p001513 Quercus lobata HOM05D006137 ORTHO05D007697 2.1e-92 343.6 355 54.1
Zm00001eb025030 Zea mays HOM05D006137 ORTHO05D007697 7.9e-92 341.7 389 47.6
FAN24G0436 Fragaria x ananassa HOM05D006137 ORTHO05D007697 3.3e-90 336.3 306 59.2
Eucgr.E00233 Eucalyptus grandis HOM05D006137 ORTHO05D007697 2.2e-89 333.6 300 57.7
Lj2A232T29 Lonicera japonica HOM05D006137 ORTHO05D007697 3.4e-87 326.2 327 55.7
FAN20G1935 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.9e-86 323.2 310 58.4
Oeu002327.1 Olea europaea HOM05D006137 ORTHO05D007697 6.5e-86 322.0 225 72.4
ATR0829G218 Amborella trichopoda HOM05D006137 ORTHO05D007697 1.1e-82 311.2 277 57.4
Haze_08142 Corylus avellana HOM05D006137 ORTHO05D007697 2.4e-80 303.5 520 38.8
SEGI_14560 Sequoiadendron giganteum HOM05D006137 ORTHO05D007697 2.6e-79 300.1 315 48.3
Mapoly0006s0263 Marchantia polymorpha HOM05D006137 ORTHO05D007697 8.8e-75 285.0 313 45.7
Pp3c12_17740 Physcomitrium patens HOM05D006137 ORTHO05D007697 2.1e-68 263.8 316 42.1
AagrBONN_evm.TU.Sc2ySwM_344.1996 Anthoceros agrestis HOM05D006137 ORTHO05D007697 1.8e-67 260.8 301 44.2
Eucgr.E00231 Eucalyptus grandis HOM05D006137 ORTHO05D007697 1.8e-67 260.8 263 53.2
SMO228G0118 Selaginella moellendorffii HOM05D006137 ORTHO05D007697 3.0e-67 260.0 304 43.8
AUR62002644 Chenopodium quinoa HOM05D006137 ORTHO05D007697 2.2e-57 227.3 184 64.7
Hund09822 Selenicereus undatus HOM05D006137 ORTHO05D007697 3.1e-56 223.4 152 70.4
Oeu033557.2 Olea europaea HOM05D006137 ORTHO05D007697 3.5e-55 219.9 178 61.8
Manes.15G185701 Manihot esculenta HOM05D006137 ORTHO05D007697 2.9e-54 216.9 238 53.4
Ca_25185_v3 Cicer arietinum L. HOM05D006137 ORTHO05D007697 4.4e-50 203.0 215 53.0
C03p78000 Brassica napus HOM05D006137 ORTHO05D007697 7.2e-45 185.7 144 63.9
AUR62002645 Chenopodium quinoa HOM05D006137 ORTHO05D007697 1.2e-44 184.9 224 48.7
AUR62040998 Chenopodium quinoa HOM05D006137 ORTHO05D007697 2.3e-43 180.6 134 66.4
Hund09821 Selenicereus undatus HOM05D006137 ORTHO05D000006 4.9e-41 172.9 171 55.0
BolC1t02019H Brassica oleracea HOM05D006137 ORTHO05D007697 4.3e-37 159.8 148 56.8
C01p20920 Brassica napus HOM05D006137 ORTHO05D007697 5.4e-32 142.9 148 51.4
BolC3t20061H Brassica oleracea HOM05D006137 ORTHO05D007697 2.7e-31 140.6 148 50.7
CBR_g18978 Chara braunii HOM05D006137 ORTHO05D007697 7.3e-29 132.5 165 43.0
Glyma.07G152633 Glycine max HOM05D006137 ORTHO05D007697 1.2e-28 131.7 134 52.2
AUR62040999 Chenopodium quinoa HOM05D006137 ORTHO05D007697 1.8e-27 127.9 89 70.8
MCO11G470 Micromonas commoda HOM05D006137 ORTHO05D007697 2.5e-21 107.5 196 31.6
Medtr1g009450 Medicago truncatula HOM05D006137 ORTHO05D007697 3.3e-21 107.1 84 60.7
PRCOL_00002339 Prasinoderma coloniale HOM05D006137 ORTHO05D007697 1.6e-15 88.2 199 30.2
BcaC09g50780 Brassica carinata HOM05D006137 ORTHO05D007697 3.1e-11 73.9 108 43.5
C02p41610 Brassica napus HOM05D006137 ORTHO05D007697 7.6e-10 69.3 36 80.6
BolC2t10179H Brassica oleracea HOM05D006137 ORTHO05D007697 7.6e-10 69.3 36 80.6
BolC2t11174H Brassica oleracea HOM05D006137 ORTHO05D007697 1.2e-07 62.0 31 80.6


User provided reference genes

Program Settings