Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 2.2e-64 248.8 125 100.0
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.4e-39 166.4 90 92.2
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 1.1e-36 156.8 88 87.5
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 2.1e-35 152.5 88 85.2
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 2.1e-35 152.5 88 85.2
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.2e-33 146.7 95 78.9
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.2e-27 126.7 99 68.7
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 3.6e-27 125.2 96 63.5
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 1.5e-25 119.8 105 58.1
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 1.5e-25 119.8 88 69.3
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 3.4e-25 118.6 87 70.1
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 9.8e-25 117.1 106 60.4
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 1.7e-24 116.3 109 56.0
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 2.2e-24 115.9 86 68.6
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 3.7e-24 115.2 85 69.4
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 4.9e-24 114.8 97 61.9
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 4.9e-24 114.8 141 46.8
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.9e-23 112.8 89 66.3
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 7.0e-23 110.9 105 58.1
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 7.8e-22 107.5 105 55.2
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 1.3e-21 106.7 87 64.4
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 1.1e-20 103.6 105 53.3
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 2.5e-20 102.4 64 73.4
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 3.3e-20 102.1 85 61.2
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 3.3e-20 102.1 81 69.1
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 5.6e-20 101.3 108 53.7
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 9.5e-20 100.5 86 60.5
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 1.6e-19 99.8 86 61.6
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 2.1e-19 99.4 86 60.5
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 3.6e-19 98.6 84 61.9
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 8.0e-19 97.4 88 56.8
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 1.8e-18 96.3 69 69.6
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 1.8e-18 96.3 86 57.0
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 1.8e-18 96.3 88 59.1
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 2.3e-18 95.9 101 52.5
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 2.3e-18 95.9 101 52.5
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 2.3e-18 95.9 94 57.4
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 6.8e-18 94.4 86 60.5
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 8.9e-18 94.0 68 67.6
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 1.2e-17 93.6 86 59.3
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 1.5e-17 93.2 105 48.6
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 2.0e-17 92.8 88 56.8
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 2.6e-17 92.4 107 51.4
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 2.6e-17 92.4 107 51.4
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 2.6e-17 92.4 107 51.4
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 2.6e-17 92.4 67 65.7
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 3.4e-17 92.0 82 58.5
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 5.8e-17 91.3 86 57.0
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 7.5e-17 90.9 100 47.0
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 1.3e-16 90.1 89 55.1
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 2.2e-16 89.4 90 50.0
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 2.2e-16 89.4 90 50.0
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 2.2e-16 89.4 68 60.3
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 2.9e-16 89.0 88 54.5
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 3.7e-16 88.6 87 57.5
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 4.9e-16 88.2 87 57.5
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 4.9e-16 88.2 86 53.5
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 8.3e-16 87.4 97 52.6
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 1.4e-15 86.7 83 55.4
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 1.4e-15 86.7 60 71.7
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 4.1e-15 85.1 86 52.3
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 4.1e-15 85.1 89 57.3
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 4.1e-15 85.1 66 65.2
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 5.4e-15 84.7 60 68.3
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 5.4e-15 84.7 60 68.3
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 7.0e-15 84.3 87 55.2
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 7.0e-15 84.3 84 53.6
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 9.2e-15 84.0 85 58.8
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 9.2e-15 84.0 85 58.8
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 9.2e-15 84.0 85 58.8
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 9.2e-15 84.0 85 58.8
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 1.6e-14 83.2 84 53.6
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 2.1e-14 82.8 84 54.8
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.1e-14 82.8 82 51.2
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 3.5e-14 82.0 97 48.5
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 3.5e-14 82.0 97 48.5
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 4.6e-14 81.6 90 50.0
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 4.6e-14 81.6 70 58.6
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 4.6e-14 81.6 94 56.4
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 4.6e-14 81.6 97 51.5
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 6.0e-14 81.3 81 49.4
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 6.0e-14 81.3 72 62.5
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 6.0e-14 81.3 73 61.6
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 7.8e-14 80.9 126 44.4
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 1.0e-13 80.5 100 52.0
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 1.0e-13 80.5 64 62.5
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 1.3e-13 80.1 86 51.2
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 3.9e-13 78.6 60 61.7
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 3.9e-13 78.6 122 41.8
Hma1.2p1_0492F.1_g164730 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 6.6e-13 77.8 69 56.5
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 6.6e-13 77.8 89 52.8
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 1.5e-12 76.6 84 48.8
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 3.3e-12 75.5 88 48.9
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 3.3e-12 75.5 88 48.9
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 3.3e-12 75.5 88 48.9
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 3.3e-12 75.5 88 48.9
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 1.2e-11 73.6 86 45.3
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 1.6e-11 73.2 64 59.4
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 2.1e-11 72.8 67 52.2
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 6.2e-11 71.2 86 45.3
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 6.2e-11 71.2 87 44.8
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 6.2e-11 71.2 109 45.0
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 8.1e-11 70.9 67 49.3
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 1.4e-10 70.1 107 43.9
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 1.8e-10 69.7 67 49.3
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 1.8e-10 69.7 67 49.3
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 2.3e-10 69.3 67 47.8
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 3.1e-10 68.9 67 47.8
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 3.1e-10 68.9 69 53.6
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 4.0e-10 68.6 84 47.6
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 6.8e-10 67.8 88 47.7
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 2.6e-09 65.9 69 47.8
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 2.6e-09 65.9 69 47.8
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 2.6e-09 65.9 69 47.8
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 1.9e-07 59.7 67 55.2
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 2.4e-07 59.3 67 50.7
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 1.2e-06 57.0 89 39.3
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 6.0e-06 54.7 35 77.1


User provided reference genes

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