Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 0.0e+00 1097.0 585 100.0
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.0e-294 1016.1 585 93.2
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 3.8e-236 821.6 588 78.7
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 1.0e-209 733.8 588 73.5
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 6.5e-204 714.5 602 70.9
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 1.9e-195 686.4 587 69.7
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.7e-191 673.3 601 68.1
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.1e-162 576.6 590 61.7
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 6.6e-156 555.1 588 60.2
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 3.8e-127 459.5 584 53.1
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 1.2e-117 427.9 580 50.9
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 5.6e-115 419.1 582 50.5
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 1.5e-96 357.8 610 44.3
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 2.7e-85 320.5 622 42.4
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 3.3e-83 313.5 618 43.7
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 1.3e-82 311.6 690 38.8
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 5.9e-80 302.8 623 40.9
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 1.9e-78 297.7 575 43.1
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 3.6e-77 293.5 622 40.7
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 4.7e-77 293.1 641 40.2
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 4.4e-75 286.6 529 44.4
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 2.2e-74 284.3 583 42.2
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 2.2e-74 284.3 621 39.1
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 3.7e-74 283.5 584 42.3
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 3.7e-74 283.5 619 40.1
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 4.5e-72 276.6 564 41.7
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 4.5e-72 276.6 560 42.9
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 1.0e-71 275.4 572 42.1
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 3.2e-70 270.4 653 37.7
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.2e-69 268.5 626 37.7
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 1.6e-69 268.1 649 37.8
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.7e-69 267.3 633 37.0
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 3.6e-69 266.9 517 43.3
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 6.1e-69 266.2 585 41.2
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 2.3e-68 264.2 569 40.2
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 3.0e-68 263.8 592 39.5
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 8.8e-68 262.3 627 39.4
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 8.8e-68 262.3 635 37.5
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 1.5e-67 261.5 627 38.4
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 4.4e-67 260.0 634 37.9
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 9.8e-67 258.8 651 36.4
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.3e-66 258.5 567 39.5
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 1.7e-66 258.1 469 43.5
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 1.8e-65 254.6 590 39.5
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 3.1e-65 253.8 629 37.5
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 4.1e-65 253.4 625 37.8
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 9.1e-65 252.3 543 40.7
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.2e-64 251.9 606 37.6
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 2.7e-64 250.8 633 37.3
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 2.9e-63 247.3 659 35.8
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 1.1e-62 245.4 554 40.8
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 1.5e-62 245.0 640 36.9
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 3.3e-62 243.8 565 38.8
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 7.2e-62 242.7 643 37.6
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 2.1e-61 241.1 613 38.5
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 4.7e-61 240.0 546 39.6
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 6.8e-60 236.1 621 36.9
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 8.9e-60 235.7 566 39.0
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 9.8e-59 232.3 627 36.2
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 9.8e-59 232.3 573 38.6
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 1.3e-58 231.9 543 38.9
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 2.8e-58 230.7 597 38.4
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 8.3e-58 229.2 557 38.6
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 9.2e-57 225.7 535 37.6
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 2.7e-56 224.2 571 38.0
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 3.5e-56 223.8 569 37.3
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 7.8e-56 222.6 693 34.1
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 7.8e-56 222.6 568 37.9
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 1.3e-55 221.9 707 33.2
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 2.3e-55 221.1 615 36.3
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 6.6e-55 219.5 586 37.7
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.6e-53 214.9 702 32.5
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 2.1e-53 214.5 566 37.6
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 3.6e-53 213.8 553 37.4
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.0e-52 212.2 646 34.5
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 1.4e-52 211.8 538 38.1
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 2.2e-50 204.5 594 36.2
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 1.9e-49 201.4 513 37.4
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 7.0e-49 199.5 539 35.3
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 8.6e-47 192.6 522 36.4
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 1.5e-46 191.8 602 33.9
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 7.3e-46 189.5 532 34.0
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 1.2e-45 188.7 552 33.3
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 1.2e-45 188.7 523 36.1
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.6e-45 188.3 614 32.7
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 1.6e-45 188.3 567 33.2
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 6.2e-45 186.4 533 33.2
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 6.2e-45 186.4 533 33.2
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 6.2e-45 186.4 299 49.8
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 1.8e-44 184.9 554 34.1
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 6.8e-44 183.0 575 33.9
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 1.2e-43 182.2 523 34.6
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 2.9e-42 177.6 598 31.8
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 2.9e-42 177.6 575 34.4
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 8.3e-42 176.0 779 29.3
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 1.4e-41 175.3 549 32.4
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 7.1e-41 172.9 568 32.7
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 9.2e-41 172.6 575 32.0
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 1.2e-40 172.2 584 32.0
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 1.6e-40 171.8 345 38.6
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 2.1e-40 171.4 522 32.4
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 3.5e-40 170.6 565 33.1
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 3.5e-40 170.6 611 31.6
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 2.3e-36 157.9 582 30.6
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 3.1e-36 157.5 549 32.2
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 8.9e-36 156.0 549 31.7
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 8.3e-34 149.4 438 37.0
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 4.1e-33 147.1 548 30.8
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 1.2e-32 145.6 542 32.1
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 1.2e-32 145.6 560 31.2
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 2.1e-32 144.8 601 30.1
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 2.7e-32 144.4 601 30.1
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.0e-31 142.5 565 32.6
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 1.0e-23 115.9 508 30.3
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 9.9e-19 99.4 490 27.6
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 1.7e-18 98.6 317 36.0
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 6.4e-18 96.7 574 26.3
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 6.4e-18 96.7 193 43.5
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 1.1e-17 95.9 330 32.4
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 1.4e-17 95.5 341 29.0
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 1.1e-14 85.9 363 28.9
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 1.6e-13 82.0 278 35.3
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 1.4e-12 79.0 293 33.1
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.5e-11 75.5 455 27.3
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 7.6e-11 73.2 387 31.0
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 9.9e-11 72.8 139 40.3
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 5.1e-07 60.5 334 28.4
Pp3c6_4890 Physcomitrium patens HOM05D031130 ORTHO05D019295 8.7e-07 59.7 63 58.7
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 1.9e-06 58.5 198 31.8


User provided reference genes

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