Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003393g0060 Nicotiana tabacum HOM05D007419 ORTHO05D009327 0.0e+00 2157.1 1096 100.0
Nitab4.5_0002008g0040 Nicotiana tabacum HOM05D007419 ORTHO05D009327 0.0e+00 1830.8 1107 86.0
PGSC0003DMG400030908 Solanum tuberosum HOM05D007419 ORTHO05D009327 0.0e+00 1777.3 1107 83.1
Sopen07g003800 Solanum pennellii HOM05D007419 ORTHO05D009327 0.0e+00 1757.3 1107 82.1
Solyc07g007920.3 Solanum lycopersicum HOM05D007419 ORTHO05D009327 0.0e+00 1744.6 1107 81.6
Peaxi162Scf00088g01333 Petunia axillaris HOM05D007419 ORTHO05D009327 0.0e+00 1698.7 1106 79.7
CAN.G1315.3 Capsicum annuum HOM05D007419 ORTHO05D009327 0.0e+00 1543.1 987 80.4
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 1.4e-279 966.8 1147 48.3
Cc06_g08060 Coffea canephora HOM05D007419 ORTHO05D009327 2.6e-278 962.6 1127 48.6
Lj7A626G73 Lonicera japonica HOM05D007419 ORTHO05D009327 3.1e-276 955.7 1200 47.1
QL09p047694 Quercus lobata HOM05D007419 ORTHO05D009327 1.5e-270 936.8 1137 46.4
Potri.018G126300 Populus trichocarpa HOM05D007419 ORTHO05D009327 7.5e-262 907.9 1137 47.2
Sabra18G0107200 Salix brachista HOM05D007419 ORTHO05D009327 1.4e-260 903.7 1138 47.5
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 4.1e-260 902.1 1120 47.3
Cfa003423 Carpinus fangiana HOM05D007419 ORTHO05D009327 5.4e-260 901.7 1141 45.4
DCAR_014901 Daucus carota HOM05D007419 ORTHO05D009327 1.1e-257 894.0 1168 45.6
Migut.K00424 Erythranthe guttata HOM05D007419 ORTHO05D009327 1.2e-254 884.0 1109 45.5
SalBow1G7934 Salvia bowleyana HOM05D007419 ORTHO05D009327 1.2e-251 874.0 1154 44.0
COL.COLO4_35160 Corchorus olitorius HOM05D007419 ORTHO05D009327 4.7e-248 862.1 1134 45.1
CANSAT11G1590 Cannabis sativa HOM05D007419 ORTHO05D009327 4.0e-247 859.0 1143 43.8
Gorai.013G235200 Gossypium raimondii HOM05D007419 ORTHO05D009327 2.0e-246 856.7 1132 44.4
Haze_25509 Corylus avellana HOM05D007419 ORTHO05D009327 9.9e-246 854.4 1226 42.3
SGA_v2.0_scaffold109G31074 Striga asiatica HOM05D007419 ORTHO05D009327 6.4e-245 851.7 1109 44.5
Thecc.09G132300 Theobroma cacao HOM05D007419 ORTHO05D009327 2.3e-242 843.2 1138 44.0
MD15G1166600 Malus domestica HOM05D007419 ORTHO05D009327 1.2e-240 837.4 1141 43.6
Rhsim01G0061500 Rhododendron simsii HOM05D007419 ORTHO05D009327 8.9e-239 831.2 1234 42.1
RcHm_v2.0_Chr2g0087621 Rosa chinensis HOM05D007419 ORTHO05D009327 1.3e-237 827.4 1121 43.4
FvH4_1g02590 Fragaria vesca HOM05D007419 ORTHO05D009327 4.9e-237 825.5 1147 42.8
FAN19G0754 Fragaria x ananassa HOM05D007419 ORTHO05D009327 2.4e-236 823.2 1147 43.0
FAN26G2390 Fragaria x ananassa HOM05D007419 ORTHO05D009327 1.6e-235 820.5 1139 42.8
FAN28G1883 Fragaria x ananassa HOM05D007419 ORTHO05D009327 1.6e-235 820.5 1148 42.8
Prupe.7G248700 Prunus persica HOM05D007419 ORTHO05D009327 4.4e-230 802.4 1146 42.1
Aqoxy7G03635 Aquilegia oxysepala HOM05D007419 ORTHO05D009327 7.6e-230 801.6 1090 43.4
ECA234G0484 Erigeron canadensis HOM05D007419 ORTHO05D009327 8.4e-229 798.1 1117 42.7
Sed0020697 Sechium edule HOM05D007419 ORTHO05D009327 1.6e-227 793.9 1124 42.3
Lj4g0016099 Lotus japonicus HOM05D007419 ORTHO05D009327 2.1e-227 793.5 1138 42.9
arahy.Tifrunner.gnm1.ann1.XRJX6H Arachis hypogaea HOM05D007419 ORTHO05D009327 2.3e-226 790.0 1141 42.5
HanXRQChr12g0356641 Helianthus annuus HOM05D007419 ORTHO05D009327 3.3e-225 786.2 1116 43.4
TPR.G24826 Trifolium pratense HOM05D007419 ORTHO05D009327 1.6e-224 783.9 1135 41.8
Glyma.17G111300 Glycine max HOM05D007419 ORTHO05D009327 3.6e-224 782.7 1136 42.5
Lsat_1_v5_gn_5_91781 Lactuca sativa HOM05D007419 ORTHO05D009327 1.5e-222 777.3 1128 41.4
Medtr4g115340 Medicago truncatula HOM05D007419 ORTHO05D009327 7.6e-222 775.0 1138 42.2
Ca_06942_v3 Cicer arietinum L. HOM05D007419 ORTHO05D009327 3.8e-221 772.7 1135 41.9
Phvul.003G168900 Phaseolus vulgaris HOM05D007419 ORTHO05D009327 6.4e-221 771.9 1138 41.6
Gohir.A13G200700 Gossypium hirsutum HOM05D007419 ORTHO05D009327 1.1e-220 771.2 1028 43.8
Lalb_Chr13g0301571 Lupinus albus HOM05D007419 ORTHO05D009327 1.0e-218 764.6 1153 41.3
ClCG06G011500 Citrullus lanatus HOM05D007419 ORTHO05D009327 2.3e-218 763.5 1161 40.0
arahy.Tifrunner.gnm1.ann1.SLI0XQ Arachis hypogaea HOM05D007419 ORTHO05D009327 3.0e-218 763.1 1136 41.8
VMungo1215G0197 Vigna mungo HOM05D007419 ORTHO05D009327 5.8e-214 748.8 1137 40.5
MELO3C029461.2 Cucumis melo HOM05D007419 ORTHO05D009327 9.9e-214 748.0 1131 40.5
Atru.chr7.1950 Acer truncatum HOM05D007419 ORTHO05D009327 2.4e-212 743.4 979 44.7
AUR62013308 Chenopodium quinoa HOM05D007419 ORTHO05D009327 3.3e-209 733.0 1142 39.8
Ah.09g224820 Amaranthus hybridus HOM05D007419 ORTHO05D009327 5.3e-207 725.7 1140 39.0
CsaV3_1G026730 Cucumis sativus L. HOM05D007419 ORTHO05D009327 2.1e-195 687.2 1150 38.3
GSVIVG01015591001 Vitis vinifera HOM05D007419 ORTHO05D009327 1.6e-187 661.0 856 45.4
vmacro07721 Vaccinium macrocarpon HOM05D007419 ORTHO05D009327 4.7e-187 659.4 1013 40.6
Duzib168G0167 Durio zibethinus HOM05D007419 ORTHO05D009327 2.9e-181 640.2 1120 38.0
Actinidia21952 Actinidia chinensis HOM05D007419 ORTHO05D009327 5.5e-172 609.4 848 43.6
Nn8g39549 Nelumbo nucifera HOM05D007419 ORTHO05D009327 8.5e-165 585.5 860 41.7
TWI34G0413 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 5.5e-164 582.8 929 39.9
Manes.06G047100 Manihot esculenta HOM05D007419 ORTHO05D009327 3.0e-162 577.0 797 43.5
Sc08g0006270 Simmondsia chinensis HOM05D007419 ORTHO05D009327 1.0e-157 562.0 892 39.9
ATR0800G079 Amborella trichopoda HOM05D007419 ORTHO05D009327 4.2e-156 556.6 1042 35.5
QL09p047989 Quercus lobata HOM05D007419 ORTHO05D009327 3.1e-151 540.4 910 37.6
Psat4g039120 Pisum sativum HOM05D007419 ORTHO05D009327 5.0e-149 533.1 697 43.3
Glyma.13G160200 Glycine max HOM05D007419 ORTHO05D009327 7.3e-148 529.3 1073 36.8
Gohir.D13G206200 Gossypium hirsutum HOM05D007419 ORTHO05D009327 1.6e-139 501.5 671 43.2
QL09p047847 Quercus lobata HOM05D007419 ORTHO05D009327 8.0e-139 499.2 1116 33.4
Eucgr.C01385 Eucalyptus grandis HOM05D007419 ORTHO05D009327 2.6e-137 494.2 846 38.4
SEGI_33879 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 9.8e-137 492.3 1205 30.7
SEGI_05905 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 2.9e-136 490.7 1083 32.2
FAN23G1807 Fragaria x ananassa HOM05D007419 ORTHO05D009327 5.4e-135 486.5 1114 33.6
Os06g0173000 Oryza sativa ssp. japonica HOM05D007419 ORTHO05D009327 6.9e-114 416.4 1038 30.9
MBI15_g15110_MAGBIO Magnolia biondii HOM05D007419 ORTHO05D009327 5.8e-113 413.3 874 34.3
Hund26535 Selenicereus undatus HOM05D007419 ORTHO05D009327 4.6e-94 350.5 408 49.0
CAN.G778.5 Capsicum annuum HOM05D007419 ORTHO05D009327 4.5e-89 334.0 203 83.3
MD15G1167400 Malus domestica HOM05D007419 ORTHO05D009327 3.8e-88 330.9 305 58.0
AUR62011176 Chenopodium quinoa HOM05D007419 ORTHO05D009327 1.0e-77 296.2 309 52.4
GSVIVG01015592001 Vitis vinifera HOM05D007419 ORTHO05D009327 1.5e-76 292.4 256 59.8
Zm00001eb375320 Zea mays HOM05D007419 ORTHO05D009327 3.4e-73 281.2 837 27.6
Gohir.D13G206300 Gossypium hirsutum HOM05D007419 ORTHO05D009327 8.8e-69 266.5 264 53.4
Oeu012224.2 Olea europaea HOM05D007419 ORTHO05D009327 2.0e-65 255.4 419 38.7
Actinidia21951 Actinidia chinensis HOM05D007419 ORTHO05D009327 2.5e-63 248.4 260 53.8
CSS0048092 Camellia sinensis var. sinensis HOM05D007419 ORTHO05D009327 1.2e-62 246.1 231 58.4
Psat4g039080 Pisum sativum HOM05D007419 ORTHO05D009327 2.7e-62 245.0 329 45.3
SMO340G0190 Selaginella moellendorffii HOM05D007419 ORTHO05D009327 2.3e-61 241.9 1144 26.3
TWI34G1676 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 2.0e-49 202.2 211 53.1
SEGI_04675 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 3.2e-47 194.9 419 30.8
QL09p046495 Quercus lobata HOM05D007419 ORTHO05D009327 1.4e-42 179.5 416 31.2
QL09p046570 Quercus lobata HOM05D007419 ORTHO05D009327 5.4e-42 177.6 408 30.4
MSTRG.26436 Avicennia marina HOM05D007419 ORTHO05D009327 1.5e-39 169.5 168 51.8
Oeu038257.1 Olea europaea HOM05D007419 ORTHO05D009327 3.0e-37 161.8 203 48.8
QL09p046488 Quercus lobata HOM05D007419 ORTHO05D009327 5.7e-36 157.5 155 53.5
QL09p046563 Quercus lobata HOM05D007419 ORTHO05D009327 5.7e-36 157.5 155 53.5
Eucgr.C01386 Eucalyptus grandis HOM05D007419 ORTHO05D009327 8.6e-32 143.7 163 48.5
Dinv10908 Davidia involucrata HOM05D007419 ORTHO05D009327 3.3e-31 141.7 113 62.8
EL10Ac8g18720 Beta vulgaris HOM05D007419 ORTHO05D009327 8.0e-30 137.1 162 47.5
MD08G1122800 Malus domestica HOM05D007419 ORTHO05D009327 1.7e-24 119.4 85 67.1
CBR_g6680 Chara braunii HOM05D007419 ORTHO05D009327 8.6e-24 117.1 253 29.2
SEGI_28656 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 2.9e-11 75.5 618 20.4
Nn8g39545 Nelumbo nucifera HOM05D007419 ORTHO05D009327 1.1e-07 63.5 92 43.5
Hund30789 Selenicereus undatus HOM05D007419 ORTHO05D009327 9.6e-07 60.5 150 33.3


User provided reference genes

Program Settings