Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 5.0e-146 521.2 279 100.0
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 1.1e-95 354.0 227 84.1
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 3.8e-93 345.5 224 84.8
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.0e-90 337.4 224 84.4
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 2.5e-81 306.2 229 74.2
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 1.8e-79 300.1 217 73.3
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 6.9e-79 298.1 227 70.5
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 9.1e-79 297.7 228 71.9
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 9.1e-79 297.7 217 73.7
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.9e-78 295.0 211 73.0
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 7.7e-78 294.7 212 74.5
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 7.7e-78 294.7 213 74.6
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 2.2e-77 293.1 214 73.4
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.2e-77 293.1 212 74.1
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 2.2e-77 293.1 225 67.6
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 3.8e-77 292.4 218 72.0
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.9e-76 290.0 212 73.6
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 4.2e-76 288.9 216 73.6
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 5.5e-76 288.5 225 70.2
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 7.2e-76 288.1 208 74.0
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 9.4e-76 287.7 216 73.6
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 9.4e-76 287.7 212 73.1
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 1.2e-75 287.3 218 71.6
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 1.2e-75 287.3 227 69.6
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.2e-75 287.3 195 74.9
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 1.2e-75 287.3 252 66.3
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.6e-75 287.0 227 70.9
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 2.1e-75 286.6 215 71.6
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 2.7e-75 286.2 218 69.3
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 4.6e-75 285.4 216 71.3
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 4.6e-75 285.4 214 72.4
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 7.9e-75 284.6 244 66.8
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 1.0e-74 284.3 256 64.1
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.4e-74 283.9 225 67.1
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.8e-74 283.5 224 69.6
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 6.7e-74 281.6 215 70.7
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 6.7e-74 281.6 251 64.5
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 6.7e-74 281.6 222 69.4
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 8.8e-74 281.2 224 69.2
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 1.1e-73 280.8 192 75.0
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.5e-73 280.4 176 80.7
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 2.0e-73 280.0 218 67.0
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.0e-73 280.0 218 71.1
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 2.0e-73 280.0 224 68.8
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 2.0e-73 280.0 219 70.8
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.6e-73 279.6 222 68.0
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.3e-73 279.3 213 70.9
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 7.4e-73 278.1 217 70.0
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 7.4e-73 278.1 240 62.9
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 9.7e-73 277.7 219 70.3
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 1.7e-72 276.9 225 66.7
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.8e-72 276.2 225 68.0
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.8e-72 276.2 223 69.5
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.8e-72 276.2 225 68.0
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 2.8e-72 276.2 205 71.7
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 3.7e-72 275.8 246 63.4
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 6.3e-72 275.0 219 69.4
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.1e-71 274.2 209 71.3
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.4e-71 273.9 223 69.1
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 3.1e-71 272.7 219 68.9
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 3.1e-71 272.7 238 65.5
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 5.3e-71 271.9 223 67.3
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 5.3e-71 271.9 215 70.2
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 5.3e-71 271.9 295 55.9
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 6.9e-71 271.6 199 72.9
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 6.9e-71 271.6 212 69.8
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 1.2e-70 270.8 212 68.4
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.2e-70 270.8 228 67.5
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 1.5e-70 270.4 228 66.7
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 2.0e-70 270.0 199 72.9
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 2.6e-70 269.6 221 68.3
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 7.7e-70 268.1 211 68.7
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 7.7e-70 268.1 214 69.6
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.2e-69 266.5 215 68.8
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 3.8e-69 265.8 219 66.2
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 8.5e-69 264.6 213 66.2
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.4e-68 263.8 223 64.6
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 1.9e-68 263.5 228 66.2
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 4.2e-68 262.3 228 65.8
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 4.2e-68 262.3 207 65.7
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 7.2e-68 261.5 217 66.8
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 1.6e-67 260.4 218 64.2
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.6e-67 260.4 219 62.1
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 2.1e-67 260.0 221 64.7
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.1e-67 260.0 212 67.0
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 2.1e-67 260.0 227 64.3
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.7e-67 259.6 212 67.0
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 2.7e-67 259.6 224 67.0
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.6e-67 259.2 228 64.5
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 3.6e-67 259.2 177 74.6
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.7e-67 258.8 215 66.0
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 7.9e-67 258.1 219 65.3
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 7.9e-67 258.1 228 64.9
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 7.9e-67 258.1 212 66.5
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 7.9e-67 258.1 260 58.8
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.8e-66 256.9 211 66.4
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.8e-66 256.9 228 64.9
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.8e-66 256.9 228 64.5
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 2.3e-66 256.5 208 67.8
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 3.0e-66 256.1 204 68.1
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 5.2e-66 255.4 214 65.4
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 6.7e-66 255.0 228 64.5
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 8.8e-66 254.6 173 76.3
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 8.8e-66 254.6 216 65.3
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.6e-65 253.1 225 63.1
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 2.6e-65 253.1 218 63.3
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 3.3e-65 252.7 190 70.0
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 3.3e-65 252.7 207 67.1
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 3.3e-65 252.7 223 62.3
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 7.4e-65 251.5 234 63.2
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 1.7e-64 250.4 234 62.8
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 2.2e-64 250.0 216 63.4
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.8e-64 249.6 226 63.3
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 2.4e-63 246.5 223 61.4
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 1.3e-61 240.7 190 65.8
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 1.3e-61 240.7 129 96.9
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 5.0e-61 238.8 214 59.8
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 9.4e-60 234.6 221 61.1
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.3e-58 229.9 174 70.1
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 7.5e-57 224.9 128 86.7
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 1.7e-56 223.8 186 64.5
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.4e-55 220.7 212 59.0
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 7.0e-55 218.4 215 57.7
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.0e-53 214.5 184 67.9
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 1.2e-51 207.6 185 64.9
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 2.7e-51 206.5 121 83.5
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 3.7e-48 196.1 224 54.5
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 1.8e-47 193.7 107 93.5
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 7.0e-47 191.8 204 53.4
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.2e-46 191.0 213 50.7
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 4.7e-43 179.1 135 69.6
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 3.0e-42 176.4 96 90.6
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 4.0e-42 176.0 185 52.4
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.2e-41 174.5 205 51.2
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 1.2e-41 174.5 211 52.6
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 2.0e-41 173.7 201 48.3
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 2.8e-40 169.9 166 54.2
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.3e-40 168.7 231 51.9
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.5e-36 157.5 193 48.2
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.3e-32 144.4 101 72.3
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 3.7e-32 142.9 165 47.3
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 1.1e-31 141.4 187 44.9
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 1.9e-28 130.6 121 60.3
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 6.2e-27 125.6 188 43.6
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 5.8e-17 92.4 113 49.6
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 3.7e-16 89.7 72 62.5
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 1.4e-15 87.8 87 54.0
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 2.4e-15 87.0 86 58.1
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 3.2e-15 86.7 74 60.8
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 5.4e-15 85.9 87 52.9
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 7.1e-15 85.5 222 32.9
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.1e-12 78.2 200 30.5
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 1.1e-10 71.6 62 59.7
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 2.4e-10 70.5 57 64.9
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 4.4e-09 66.2 40 80.0


User provided reference genes

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