Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 4.7e-175 617.8 329 100.0
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 2.7e-167 592.0 329 96.4
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 3.1e-155 552.0 329 87.8
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 5.0e-153 544.7 329 87.2
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 1.4e-150 536.6 331 86.1
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 6.6e-145 517.7 332 83.4
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.1e-111 406.4 334 66.8
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 8.1e-111 404.4 337 70.3
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.1e-110 404.1 325 67.7
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 9.0e-110 401.0 330 65.8
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 2.0e-109 399.8 332 65.1
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.3e-108 397.1 325 67.7
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 8.4e-108 394.4 334 64.7
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.1e-107 394.0 332 65.4
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.4e-107 393.7 327 64.5
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 4.6e-106 388.7 323 64.7
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 1.7e-105 386.7 330 64.2
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 5.6e-104 381.7 332 62.3
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 2.8e-103 379.4 331 63.7
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.0e-102 375.6 324 62.7
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 2.6e-101 372.9 332 62.0
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 3.4e-101 372.5 384 56.5
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 4.5e-101 372.1 332 60.2
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 5.8e-101 371.7 331 62.8
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 7.6e-101 371.3 330 63.6
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 3.8e-100 369.0 323 62.5
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.8e-100 369.0 324 62.0
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 4.9e-100 368.6 324 61.7
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 6.4e-100 368.2 330 63.0
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 1.1e-99 367.5 332 63.0
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 2.4e-99 366.3 332 63.0
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.6e-98 363.6 331 61.6
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.6e-98 363.6 330 60.9
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 7.9e-98 361.3 330 60.3
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.0e-97 359.4 330 60.0
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 1.1e-96 357.5 332 60.2
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.5e-96 356.3 324 61.1
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 4.3e-96 355.5 332 59.9
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 4.3e-96 355.5 330 61.8
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 4.3e-96 355.5 330 61.8
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 1.3e-95 354.0 332 59.0
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 3.7e-95 352.4 333 60.1
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 6.2e-95 351.7 323 59.8
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 6.4e-92 341.7 330 59.7
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 8.4e-92 341.3 328 58.5
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.4e-91 340.5 331 57.7
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 9.6e-88 327.8 331 58.9
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 9.6e-88 327.8 339 55.2
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 6.2e-87 325.1 333 55.6
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 6.2e-87 325.1 337 57.0
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 3.1e-86 322.8 329 58.4
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 4.0e-86 322.4 338 55.9
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 5.8e-85 318.5 332 55.1
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 6.5e-84 315.1 332 56.3
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 8.4e-84 314.7 333 54.4
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 1.4e-83 313.9 334 53.0
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 1.9e-83 313.5 337 54.3
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 2.5e-83 313.2 334 55.7
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 5.5e-83 312.0 331 52.6
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 7.1e-83 311.6 332 55.7
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 9.3e-83 311.2 332 55.4
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 2.7e-82 309.7 339 56.3
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 4.6e-82 308.9 329 54.4
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 3.9e-81 305.8 325 56.6
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 1.1e-80 304.3 332 50.6
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 2.5e-80 303.1 404 47.3
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 3.3e-80 302.8 387 46.3
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 9.7e-80 301.2 338 53.3
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.3e-79 300.8 332 52.4
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 2.2e-79 300.1 267 62.9
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 2.8e-79 299.7 319 55.2
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 6.3e-79 298.5 331 54.1
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.4e-78 296.6 331 53.8
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 9.0e-78 294.7 332 49.7
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 1.2e-77 294.3 319 54.9
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 1.9e-75 287.0 332 51.5
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.9e-75 287.0 332 49.4
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 7.2e-75 285.0 278 56.1
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.2e-74 284.3 278 56.1
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 4.6e-74 282.3 387 44.4
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 6.1e-74 282.0 332 50.3
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 6.1e-74 282.0 305 53.4
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 1.0e-73 281.2 324 53.4
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 1.4e-73 280.8 333 50.2
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 2.3e-73 280.0 332 48.2
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 6.7e-73 278.5 325 49.5
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 8.8e-73 278.1 329 51.1
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 3.7e-71 272.7 323 48.9
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.8e-70 270.4 275 55.3
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.5e-69 267.3 324 52.2
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 2.0e-69 266.9 334 49.7
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.3e-68 264.2 332 47.6
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.7e-68 263.8 389 45.0
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 8.5e-68 261.5 328 50.0
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 3.2e-67 259.6 321 48.0
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 5.1e-65 252.3 284 49.3
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 6.7e-65 251.9 291 49.5
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 6.7e-65 251.9 320 50.0
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.3e-63 247.7 341 46.6
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 1.3e-63 247.7 333 48.0
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 6.3e-63 245.4 334 48.2
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 1.8e-62 243.8 372 42.2
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 9.1e-62 241.5 328 45.7
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.2e-61 241.1 304 48.7
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 5.9e-61 238.8 339 47.2
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 8.5e-60 235.0 309 47.6
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.1e-59 234.6 389 40.9
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 2.1e-58 230.3 263 51.3
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 2.7e-58 229.9 366 42.6
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 4.7e-58 229.2 322 44.7
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 3.0e-57 226.5 354 42.4
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 3.9e-57 226.1 329 45.3
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.0e-56 223.8 305 44.6
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 2.0e-56 223.8 308 45.5
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 7.4e-56 221.9 262 50.0
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 2.8e-55 219.9 302 44.7
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.8e-54 217.2 330 42.7
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 4.1e-54 216.1 326 43.6
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 4.1e-54 216.1 326 43.6
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 2.6e-53 213.4 331 42.6
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 1.0e-52 211.5 332 43.1
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 1.3e-52 211.1 197 57.9
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 5.0e-52 209.1 292 43.2
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 8.5e-52 208.4 360 40.6
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 1.1e-51 208.0 292 43.5
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 1.5e-51 207.6 333 41.4
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 4.2e-51 206.1 155 69.7
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 3.6e-50 203.0 306 43.1
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 1.0e-49 201.4 330 42.7
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 1.4e-49 201.1 292 42.8
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.3e-49 200.3 309 42.1
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 7.5e-48 195.3 181 59.7
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.3e-47 194.5 292 40.8
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 6.3e-47 192.2 302 40.1
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 6.3e-47 192.2 210 51.0
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 1.4e-46 191.0 315 41.3
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 1.9e-43 180.6 146 65.8
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 3.0e-41 173.3 152 63.2
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 6.8e-41 172.2 176 56.2
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.7e-40 169.1 367 33.5
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 3.7e-39 166.4 142 62.0
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 7.0e-38 162.2 278 41.4
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.3e-36 157.9 151 60.3
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 5.5e-35 152.5 329 36.5
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 9.5e-35 151.8 209 45.9
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 9.5e-35 151.8 263 40.3
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 1.2e-34 151.4 218 43.1
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 2.1e-34 150.6 311 34.1
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.4e-33 147.9 159 48.4
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.3e-33 147.1 159 51.6
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.0e-33 146.7 159 51.6
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 3.4e-32 143.3 262 40.8
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 3.1e-30 136.7 233 42.5
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 7.0e-30 135.6 287 35.9
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.5e-29 133.3 371 29.4
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 1.3e-28 131.3 192 45.3
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 1.1e-27 128.3 130 56.2
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 3.3e-27 126.7 133 57.1
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 5.6e-27 125.9 112 61.6
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 3.6e-26 123.2 134 56.7
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 5.2e-25 119.4 262 34.0
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 3.5e-21 106.7 90 61.1
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 1.5e-19 101.3 324 31.5
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 1.4e-17 94.7 219 36.1
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 1.4e-17 94.7 219 36.1
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 5.2e-17 92.8 195 34.4
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 6.8e-17 92.4 48 87.5
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 6.8e-17 92.4 274 31.0
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 1.5e-16 91.3 293 30.7
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 2.6e-16 90.5 214 29.0
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 1.3e-15 88.2 155 36.8
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 1.3e-15 88.2 155 36.8
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 2.9e-15 87.0 202 35.1
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 1.4e-14 84.7 84 57.1
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 3.5e-13 80.1 79 55.7
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 5.6e-11 72.8 103 55.3
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 4.7e-10 69.7 60 63.3
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 2.0e-08 64.3 54 55.6
MBI12_g20562_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.8e-08 62.8 50 62.0
MBI07_g40370_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.4e-06 57.4 134 33.6


User provided reference genes

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